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2020-02-20services: udev: Do not rely on shepherd inheriting environment variables.Florian Pelz
Fixes <https://bugs.gnu.org/39671>. * gnu/services/base.scm (udev-shepherd-service)[start] Move or copy environment variables to 'fork+exec-command' instead of 'setenv'.
2020-02-20gnu: corrode: Use git-file-name.Jakub Kądziołka
* gnu/packages/haskell-apps.scm (corrode): Use git-file-name.
2020-02-20gnu: libjit: Use git-file-nameJakub Kądziołka
* gnu/packages/assembly.scm (libjit): Use git-file-name.
2020-02-20gnu: guile-gcrypt: Use git-file-nameJakub Kądziołka
* gnu/packages/gnupg.scm (guile-gcrypt): Use git-file-name.
2020-02-20gnu: ath9k-htc-firmware, b43-tools: Use git-file-name.Jakub Kądziołka
* gnu/packages/firmware.scm (ath9k-htc-firmware): Use git-file-name. (b43-tools): Likewise.
2020-02-20gnu: fpga.scm: Use git-version and git-file-name where appropriate.Jakub Kądziołka
* gnu/packages/fpga.scm (abc): Use git-version. The uri is using an autogenerated commit package, it would ideally use git-fetch. The canonical repository is now on GitHub, but the old commit ID is not present. This means that changing the origin is best done together with an update. (icestorm): Use git-version, git-file-name. (arachne-pnr): Use git-file-name.
2020-02-20gnu: ntk: Use git-file-name.Jakub Kądziołka
* gnu/packages/fltk.scm (ntk): Use git-file-name.
2020-02-20gnu: git-annex: Update to 7.20200219.Kyle Meyer
* gnu/packages/haskell-apps.scm (git-annex): Update to 7.20200219. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-02-20gnu: perl-image-exiftool: Update to 11.85.Leo Famulari
* gnu/packages/photo.scm (perl-image-exiftool): Update to 11.85.
2020-02-20gnu: RawTherapee: Update to 5.8.Leo Famulari
* gnu/packages/photo.scm (rawtherapee): Update to 5.8.
2020-02-20doc: Use two spaces after full stops.Nicolas Goaziou
* doc/guix.texi (The Store): Use two spaces after full stops.
2020-02-20ssh: Add Kerberos-support to ssh:// daemon URLsLars-Dominik Braun
* guix/ssh.scm (open-ssh-session): Fall back to GSSAPI if public key authentication does not work Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-02-20gnu: Add Kerberos support to libsshLars-Dominik Braun
* gnu/packages/ssh.scm (libssh)[inputs]: Depend on mit-krb5 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-02-20build-self: Show wider backtraces.Ludovic Courtès
* build-aux/build-self.scm (build): Add 'setenv' call for "COLUMNS".
2020-02-19gnu: certbot, python-acme: Update to 1.2.0.Leo Famulari
* gnu/packages/tls.scm (certbot, python-acme): Update to 1.2.0.
2020-02-19gnu: linux-libre: Update to 5.4.21.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-5.4-version): Update to 5.4.21. (linux-libre-5.4-pristine-source): Update hash.
2020-02-19gnu: linux-libre@4.19: Update to 4.19.105.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.19-version): Update to 4.19.105. (linux-libre-4.19-pristine-source): Update hash.
2020-02-20gnu: libevent: Split into two outputs.Julien Lepiller
This removes python and its dependencies from the libevent closure, reducing it from 180MB to 70MB. * gnu/packages/libevent.scm (libevent): Add bin output.
2020-02-19gnu: js-selectize: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/javascript.scm (js-selectize)[home-page]: Use HTTPS.
2020-02-19gnu: python-scikit-image: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python-science.scm (python-scikit-image)[home-page]: Use HTTPS.
2020-02-19gnu: transset-df: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (transset-df)[home-page]: Use HTTPS.
2020-02-19gnu: munge: Update to 0.5.14.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (munge): Update to 0.5.14. [source]: Expand snippet. [arguments]: Continue installing pkg-config file. Add new ‘skip-failing-tests’ for the new test suite.
2020-02-19gnu: crypto++: Update to 8.2.0.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (crypto++): Update to 8.2.0.
2020-02-19gnu: crypto++: Returt #t from all phases.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (crypto++)[arguments]: Return #t from ‘install-pkg-config’.
2020-02-19gnu: crypto++: Build in parallel.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (crypto++)[arguments]: Make ‘build-shared’ the main ‘build’ phase. Respect MAKE-FLAGS and PARALLEL-JOB-COUNT.
2020-02-19gnu: crypto++: Don't hard-code VERSION.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (crypto++)[arguments]: Use package VERSION.
2020-02-19gnu: libbytesize: Update to 2.2.Tobias Geerinckx-Rice
* gnu/packages/c.scm (libbytesize): Update to 2.2.
2020-02-19gnu: r-scran: Update to 1.14.6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.14.6.
2020-02-19gnu: r-hdf5array: Update to 1.14.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-hdf5array): Update to 1.14.2.
2020-02-19gnu: r-gviz: Update to 1.30.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-gviz): Update to 1.30.3.
2020-02-19gnu: r-rhtslib: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib): Update to 1.18.1.
2020-02-19gnu: r-genomicfeatures: Update to 1.38.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.38.2.
2020-02-19gnu: r-rsamtools: Update to 2.2.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rsamtools): Update to 2.2.2.
2020-02-19gnu: r-limma: Update to 3.42.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.42.2.
2020-02-19gnu: r-shortread: Update to 1.44.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-shortread): Update to 1.44.3.
2020-02-19gnu: r-depecher: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-depecher): Update to 1.2.1.
2020-02-19gnu: r-mixomics: Update to 6.10.8.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.10.8.
2020-02-19gnu: r-rsubread: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.0.1.
2020-02-19gnu: r-atacseqqc: Update to 1.10.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.10.2.
2020-02-19gnu: r-heatplus: Update to 2.32.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-heatplus): Update to 2.32.1.
2020-02-19gnu: r-biocsingular: Update to 1.2.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocsingular): Update to 1.2.2.
2020-02-19gnu: r-inspect: Update to 1.16.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.3.
2020-02-19gnu: r-biclust: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-biclust): Update to 2.0.2.
2020-02-19gnu: r-tolerance: Update to 2.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tolerance): Update to 2.0.0. [propagated-inputs]: Add r-mass.
2020-02-19gnu: r-imager: Update to 0.42.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-imager): Update to 0.42.1. [propagated-inputs]: Remove r-cairo and r-plyr.
2020-02-19gnu: r-actigraphy: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-actigraphy): Update to 1.4.0. [propagated-inputs]: Remove r-sdmtools.
2020-02-19gnu: r-actfrag: Update to 0.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-actfrag): Update to 0.1.1.
2020-02-19gnu: r-gamlss: Update to 5.1-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-gamlss): Update to 5.1-6.
2020-02-19gnu: r-randtoolbox: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-randtoolbox): Update to 1.30.1.
2020-02-19gnu: r-showtext: Update to 0.7-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtext): Update to 0.7-1.
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