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2020-06-11gnu: subversion: Update to 1.14.0.Efraim Flashner
* gnu/packages/version-control.scm (subversion): Update to 1.14.0. [source]: Update source URI.
2020-06-11gnu: nghttp2: Replace with version 1.41 [fixes CVE-2020-11080].Ludovic Courtès
* gnu/packages/web.scm (nghttp2-1.41): New variable. (nghttp2)[replacement]: New field.
2020-06-11packages: 'package-grafts' returns grafts for all the relevant outputs.Ludovic Courtès
Fixes <https://bugs.gnu.org/41796>. Reported by Jakub Kądziołka <kuba@kadziolka.net>. * guix/packages.scm (input-graft): Add 'output' parameter and honor it. Add OUTPUT to the cache key. (input-cross-graft): Likewise. (fold-bag-dependencies): Operate on inputs instead of nodes. Turn VISITED into a vhash instead of a set. Pass PROC HEAD and OUTPUT instead of just HEAD. (bag-grafts): Adjust accordingly. * tests/packages.scm ("package-grafts, dependency on several outputs"): New test.
2020-06-11gnu: r-with-tests, r-minimal: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests, r-minimal): Update to 4.0.1.
2020-06-11gnu: r-brms: Update to 2.13.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-brms): Update to 2.13.0.
2020-06-11gnu: r-crochet: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-crochet): Update to 2.3.0. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-openmx: Update to 2.17.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-openmx): Update to 2.17.4.
2020-06-11gnu: r-stanheaders: Update to 2.21.0-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-stanheaders): Update to 2.21.0-5. [propagated-inputs]: Add r-rcppeigen and r-rcppparallel.
2020-06-11gnu: r-semtools: Update to 0.5-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-semtools): Update to 0.5-3.
2020-06-11gnu: r-sem: Update to 3.1-11.Ricardo Wurmus
* gnu/packages/cran.scm (r-sem): Update to 3.1-11.
2020-06-11gnu: r-emplik: Update to 1.1-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emplik): Update to 1.1-1.
2020-06-11gnu: r-rsvg: Update to 2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rsvg): Update to 2.1. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-actuar: Update to 3.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-actuar): Update to 3.0-0.
2020-06-11gnu: r-gdina: Update to 2.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gdina): Update to 2.8.0.
2020-06-11gnu: r-seewave: Update to 2.1.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-seewave): Update to 2.1.6. [inputs]: Add libsndfile.
2020-06-11gnu: r-elasticnet: Update to 1.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-elasticnet): Update to 1.3.
2020-06-11gnu: r-showtext: Update to 0.8-1.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtext): Update to 0.8-1.
2020-06-11gnu: r-showtextdb: Update to 3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-showtextdb): Update to 3.0.
2020-06-11gnu: r-abcrlda: Update to 1.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-abcrlda): Update to 1.0.3.
2020-06-11gnu: r-rgdal: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): Update to 1.5-10. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-parameters: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.8.0.
2020-06-11gnu: r-systemfonts: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-systemfonts): Update to 0.2.3.
2020-06-11gnu: r-rhpcblasctl: Update to 0.20-137.Ricardo Wurmus
* gnu/packages/cran.scm (r-rhpcblasctl): Update to 0.20-137.
2020-06-11gnu: r-ggraph: Update to 2.0.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggraph): Update to 2.0.3.
2020-06-11gnu: r-europepmc: Update to 0.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-europepmc): Update to 0.4. [propagated-inputs]: Add r-rlang, r-tibble, and r-tidyr. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-msigdbr: Update to 7.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-msigdbr): Update to 7.1.1. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-bookdown: Update to 0.19.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.19.
2020-06-11gnu: r-rms: Update to 6.0-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rms): Update to 6.0-0. [propagated-inputs]: Add r-cluster, r-digest, and r-mass.
2020-06-11gnu: r-polspline: Update to 1.1.19.Ricardo Wurmus
* gnu/packages/cran.scm (r-polspline): Update to 1.1.19.
2020-06-11gnu: r-lemon: Update to 0.4.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-lemon): Update to 0.4.5. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-picante: Update to 1.8.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-picante): Update to 1.8.2.
2020-06-11gnu: r-lavaan: Update to 0.6-6.Ricardo Wurmus
* gnu/packages/cran.scm (r-lavaan): Update to 0.6-6.
2020-06-11gnu: r-cmprsk: Update to 2.2-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-10.
2020-06-11gnu: r-gmp: Update to 0.6-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gmp): Update to 0.6-0.
2020-06-11gnu: r-bigrquery: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-bigrquery): Update to 1.3.1.
2020-06-11gnu: r-iso: Update to 0.0-18.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-iso): Update to 0.0-18.1.
2020-06-11gnu: r-sjplot: Update to 2.8.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.8.4.
2020-06-11gnu: r-effectsize: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-effectsize): Update to 0.3.1.
2020-06-11gnu: r-bayesplot: Update to 1.7.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayesplot): Update to 1.7.2. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-emmeans: Update to 1.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.7.
2020-06-11gnu: r-mosaicdata: Update to 0.18.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-mosaicdata): Update to 0.18.0.
2020-06-11gnu: r-doby: Update to 4.6.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-doby): Update to 4.6.6. [propagated-inputs]: Remove r-dplyr and r-plyr. [native-inputs]: Add r-knitr.
2020-06-11gnu: r-flextable: Update to 0.5.10.Ricardo Wurmus
* gnu/packages/cran.scm (r-flextable): Update to 0.5.10. [propagated-inputs]: Add r-uuid.
2020-06-11gnu: r-sjmisc: Update to 2.8.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.5.
2020-06-11gnu: r-sjlabelled: Update to 1.1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.5.
2020-06-11gnu: r-insight: Update to 0.8.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.8.5.
2020-06-11gnu: r-overlap: Update to 0.3.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-overlap): Update to 0.3.3.
2020-06-11gnu: r-officer: Update to 0.3.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-officer): Update to 0.3.11.
2020-06-11gnu: r-ellipse: Update to 0.4.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ellipse): Update to 0.4.2.
2020-06-11gnu: r-reticulate: Update to 1.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-reticulate): Update to 1.16.
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