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Fixes <https://bugs.gnu.org/39727>.
Reported by Paul Garlick <pgarlick@tourbillion-technology.com>.
* nix/libstore/gc.cc (LocalStore::removeUnusedLinks) [HAVE_STATX]: Add
'statx_flags' static variables. Clear 'AT_STATX_DONT_SYNC' flag from
'statx_flags' when 'statx' returns EINVAL.
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* gnu/packages/python-web.scm (awscli): Update to 1.18.6.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/vim.scm (vim-full)[description]: New field. Explain what
vim-full provides over vim.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/musl (musl): Update to 1.2.0.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/benchmark.scm (bonnie++): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/emacs-xyz.scm (emacs-eacl)[description]: Correct misspelling of
"commands".
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/emacs-xyz.scm (emacs-elixir-mode)[description]: Downcase
incorrectly capitalized word.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Rewrite phase
'set-glibc-file-names' to use VERSION>=? from (guix utils) and splice in the
relevant build code, instead of doing the comparison at build time.
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* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Add phase
'add-missing-triplets'.
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* gnu/packages/node.scm (node)[arguments]: When building on
armhf-linux, disable several zlib tests.
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* gnu/packages/node.scm (node): Update to 10.19.0.
[inputs]: Remove LIBUV and NGHTTP2:LIB. Add LIBUV/LATEST and
NGHTTP2-1.40:LIB.
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* gnu/packages/web.scm (nghttp2-1.40): New public variable.
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* gnu/packages/libevent.scm (libuv/latest): New public variable.
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* gnu/packages/opencl.scm (pocl)[inputs]: Change from LLVM-8 to LLVM.
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[[PGP Signed Part:No public key for F530C3B4A2A9F06D created at 2020-02-23T04:48:54+0100 using RSA]]
From 6c23c5966a3c7ed01c784874e410d5fe3009bfc5 Mon Sep 17 00:00:00 2001
From: Evan Straw <evan.straw99@gmail.com>
Date: Sat, 22 Feb 2020 19:47:19 -0800
Subject: [PATCH] gnu: Add emacs-company-emoji.
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): New variable.
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* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.0.14.
[source]: Fetch from git; remove pre-built scripts.
[arguments]: Set make-flags; update wrap-programs phase to wrap all scripts.
[inputs]: Add guile-3.0, diamond, python-wrapper, lapack, and openblas; remove
python-2.
[native-inputs]: Add which.
[license]: Update to GPLv3+
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.30.
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* gnu/packages/bioinformatics.scm (crossmap): Update to 0.3.8.
[arguments]: Remove to build with default Python.
[inputs]: Add python-pybigwig; replace python2-bx-python, python2-numpy, and
python2-pysam with their Python 3 variants.
[native-inputs]: Replace python2-cython and python2-nose with their Python 3
variants.
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* gnu/packages/crates-io.scm (rust-libressl-pnacl-sys-2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-pnacl-build-helper-1.4):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-zip-0.5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-bzip2-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-partial-io-0.2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-winpty-sys-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-bindgen-0.33): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-cexpr-0.2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-clang-sys-0.11): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-libloading-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-target-build-utils-0.3):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-json-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-linked-hash-map-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-macros-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-test-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-derive-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-codegen-internals-0.14):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/bioinformatics.scm (macs): Update to 2.2.6.
[source]: Fetch from git.
[arguments]: Enable tests, build with default Python.
[inputs]: Replace python2-numpy with python-numpy.
[native-inputs]: Add python-pytest.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-sqlite3, cl-dbd-sqlite3): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-postgres, cl-dbd-postgres): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-mysql, cl-dbd-mysql): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbi, cl-dbi): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-postmodern, cl-postmodern): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-s-sql, cl-s-sql): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-simple-date-postgres-glue,
cl-simple-date-postgres-glue): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-postgres, cl-postgres): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-simple-date, cl-simple-date,
ecl-simple-date): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-mysql, cl-mysql): New variables.
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* gnu/packages/cran.scm (r-rstanarm): New variable.
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* gnu/packages/cran.scm (r-rstan): New variable.
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