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2022-01-10gnu: shadow: Update to 4.9.Maxim Cournoyer
* gnu/packages/admin.scm (shadow): Update to 4.9. [source]: Remove hurd patch, merged upstream. [phases]{fix-linking-to-pam}: New phase. * gnu/packages/patches/shadow-hurd-pctrl.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2022-01-10gnu: libpcap: Update to 2.62.Maxim Cournoyer
* gnu/packages/linux.scm (libpcap): Update to 2.62. [phases]{configure}: Delete phase, and move LDFLAGS to... [make-flags]: ... here. Define arguments via G-expressions.
2022-01-10gnu: cmake-bootstrap: Update to 3.21.4.Maxim Cournoyer
* gnu/packages/cmake.scm (cmake-bootstrap): Update to 3.21.4.
2022-01-10gnu: eudev: Update to 3.2.11.Maxim Cournoyer
* gnu/packages/linux.scm (eudev): Update to 3.2.11. [phases]{make-source-writable}: Remove phase, no longer needed. {patch-bindir-in-btrfs-rules}: Likewise, fixed upstream. Remove trailing #t.
2022-01-10gnu: util-linux: Update to 2.37.2.Maxim Cournoyer
* gnu/packages/linux.scm (util-linux): Update to 2.37.2.
2022-01-10gnu: gnupg: Update to 2.2.32.Maxim Cournoyer
* gnu/packages/gnupg.scm (gnupg): Update to 2.2.32. (gnupg-2.2.32): Delete variable. (qgpgme)[native-inputs]: Use the regular gnupg package. * gnu/packages/emacs-xyz.scm (emacs-pinentry): Likewise.
2022-01-10gnu: glibmm-2.64: Fix libsigc++ propagation.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/52519>. The package was propagating two variants of libsigc++. * gnu/packages/glib.scm (glibmm-2.64)[propagated-inputs]: Replace existing libsigc++ package instead of prepending an extra one. Reported-by: Leo Famulari <leo@famulari.name>
2022-01-10gnu: glibmm: Remove trailing #t.Maxim Cournoyer
* gnu/packages/glib.scm (glibmm): Remove trailing #t.
2022-01-10gnu: pciutils: Fix the conditional for the kmod input.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/52411>. Thanks to Maxime Devos for suggesting the solution. * gnu/packages/pciutils.scm (pciutils): Delete trailing #t. [inputs]{kmod}: Use the hurd-target? procedure in the condition, which correctly handles the Nix system of %current-system and GNU triplet of %current-target-system.
2022-01-10gnu: help2man: Update to 1.48.5.Maxim Cournoyer
* gnu/packages/man.scm (help2man): Update to 1.48.5.
2022-01-10gnu: python-nose: Fix build.Maxim Cournoyer
This unmaintained package doesn't build anymore on Python 3.9.9. * gnu/packages/check.scm (python-nose)[phases]{invoke-2to3}: New phase. [properties]: New field. (python2-nose): Strip python2 property. [phases]{invoke-2to3}: Delete phase.
2022-01-10gnu: glib: Fix cross-compilation.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/52574>. Reported by L p R n d n <guix@lprndn.info>. Thanks to Maxime Devos for the suggested fix. * gnu/packages/glib.scm (glib)[configure-flags]: Define as a G-expression. (glib-with-documentation)[configure-flags]: Likewise.
2022-01-10gnu: libproxy: Remove target condition from check phase.Maxim Cournoyer
* gnu/packages/networking.scm (libproxy)[phases]{check}: Remove target condition.
2022-01-10gnu: libcap: Use #$output unconditionally.Maxim Cournoyer
* gnu/packages/linux.scm (libcap)[phases]{configure}: Use #$output unconditionally.
2022-01-10gnu: heimdal: Unify phases, addressing TODO.Maxim Cournoyer
* gnu/packages/kerberos.scm (heimdal)[phases]: Unconditionally use the %current-target-system branch.
2022-01-10gnu: cairo: Use bash-minimal unconditionally.Maxim Cournoyer
* gnu/packages/gtk.scm (cairo)[inputs]: Use bash-minimal unconditionally.
2022-01-10gnu: llvm-12: Use quasiquote, addressing TODO.Maxim Cournoyer
* gnu/packages/llvm.scm (llvm-12)[configure-flags]: Use quasiquote.
2022-01-10gnu: mozjs-60: Use quasiquote, addressing TODO.Maxim Cournoyer
* gnu/packages/gnuzilla.scm (mozjs-60)[configure-flags]: Use quasiquote.
2022-01-10gnu: gobject-introspection: Unconditionally use flex and bison.Maxim Cournoyer
* gnu/packages/glib.scm (gobject-introspection): Delete trailing #t. [native-inputs]: Unconditionally use flex and bison.
2022-01-10gnu: rust-bitflags-1: Absorb rust-bitflags-1.3.Maxim Cournoyer
* gnu/packages/crates-io.scm (rust-bitflags-1.3): Delete variable, absorbed into... (rust-bitflags-1): ... this one. * gnu/packages/syndication.scm (newsboat)[cargo-inputs]: Adjust to use rust-bitflags-1.
2022-01-10guix: lint: Fix comment per TODO.Maxim Cournoyer
* guix/lint.scm (check-wrapper-inputs): Address TODO in comment.
2022-01-10gnu: binutils: Absorb binutils-next.Maxim Cournoyer
* gnu/packages/base.scm (binutils)[configure-flags]: Set out-of-source? to #t. {--enable-64-bit-bfd, --enable-compressed-debug-sections=all, --enable-lto, --enable-separate-code, --enable-threads}: New flags. (binutils-next): Delete variable. (binutils-gold): Inherit from binutils. * gnu/packages/linux.scm (kexec-tools)[native-inputs]: Replace binutils-next with binutils.
2022-01-10gnu: isc-dhcp: Address TODOs.Maxim Cournoyer
* gnu/packages/admin.scm (isc-dhcp): Remove trailing #t. [phases]{post-install}: Remove the 'native-inputs' argument. {post-configure}: Do not patch the libexec scripts. [inputs]{bash}: Remove conditional.
2022-01-10gnu: autoconf-2.69: Repatriate unpatch-shebangs phase from 2.71.Maxim Cournoyer
* gnu/packages/autotools.scm (autoconf-2.71)[phases]{unpatch-shebangs}: Move to... * gnu/packages/autotools.scm (autoconf-2.69)[phases]: ... here.
2022-01-10gnu: avahi: Make all arguments unconditional.Maxim Cournoyer
* gnu/packages/avahi.scm (avahi)[origin]: Fix indentation and remove trailing #t. [arguments]: Re-integrate conditional arguments.
2022-01-10gnu: python-3.9: Update to 3.9.9.Maxim Cournoyer
* gnu/packages/python.scm (python-3.9): Update to 3.9.9.
2022-01-10utils: Fix wrap-script argument handling.Brendan Tildesley
* guix/build/utils.scm (wrap-script): Don't add (car cl) one too many times, cl its self contains it's car. Split the aguments string with string-tokenize to avoid leaving an empty string argument when there should be none. These two bugs seemed to be partially cancelling each other out so that scripts still worked when ran with no arguments. * tests/build-utils.scm: Adjust wrap-script to above changes. Add two tests to ensure the command line arguments appear identical to a script and its wrapped version. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-01-10gnu: Remove meson-0.59 workarounds.Maxim Cournoyer
Mostly automated with the following command: $ grep --include='*.scm' '#:meson ,meson-0.59' -rl \ | xargs sed -z 's/#:meson[^\n]*\s*//' -i * gnu/packages/freedesktop.scm (malcontent) (accountsservice): Delete #:meson argument. * gnu/packages/games.scm (gnome-2048): Likewise. * gnu/packages/geo.scm (gnome-maps): Likewise. * gnu/packages/gnome.scm (gnome-photos, gnome-music) (gnome-initial-setup, gnome-user-share, gnome-characters) (gnome-disk-utility, gnome-font-viewer, evince, glade3) (gnome-mines, gnome-sudoku, gnome-settings-daemon, devhelp) (totem, eog, gvfs, simple-scan, epiphany, gnome-session, gedit) (network-manager-applet, gnome-control-center, gnome-shell, nautilus) (gnome-default-applications, gnome-weather, gnome-tweaks, cheese, gthumb) (gitg, polari, gnome-boxes, gtranslator): Likewise. * gnu/packages/gtk.scm: (gtkmm-3): Likewise. * gnu/packages/pdf.scm (zathura): Likewise. * gnu/packages/photo.scm (entangle): Likewise. * gnu/packages/video.scm (pitivi): Likewise. * gnu/packages/virtualization.scm (libvirt-glib): Likewise.
2022-01-10gnu: meson: Update to 0.60.2 and absorb meson-wrapped.Maxim Cournoyer
* gnu/packages/build-tools.scm (meson): Update to 0.60.2, and integrate fixes made in 'meson-wrapped': [phases]{wrap}: Replace phase. [inputs]: Add python-wrapper. [propagated-inputs]: Delete field. [properties]: Likewise. (meson-wrapped): Delete variable.
2022-01-10gnu: python-flit-core: Update to 3.5.1.Maxim Cournoyer
* gnu/packages/python-build.scm (python-flit-core): Update to 3.5.1.
2022-01-10gnu: python-tomli: Update to 2.0.0.Maxim Cournoyer
* gnu/packages/python-build.scm (python-tomli): Update to 2.0.0.
2022-01-10gnu: python-pyparsing: Update to 3.0.6.Maxim Cournoyer
* gnu/packages/python-build.scm (python-pyparsing): Update to 3.0.6. [properties]: Add a python2-variant property. (python2-pyparsing): Inherit from the 2.4.7 variant, and strip the python2-variant property.
2022-01-10gnu: python-wheel: Update to 0.37.0.Maxim Cournoyer
* gnu/packages/python-build.scm (python-wheel): Update to 0.37.0.
2022-01-10gnu: python-packaging-bootstrap: Update to 21.3.Maxim Cournoyer
* gnu/packages/python-build.scm (python-packaging-bootstrap): Update to 21.3. (python2-packaging-bootstrap): Peg version to 20.0.
2022-01-10gnu: mesa: Update to 21.3.2.Maxim Cournoyer
* gnu/packages/gl.scm (mesa): Update to 21.3.2. [phases]{disable-failing-test}: Disable the anv_state_pool unstable tests.
2022-01-10gnu: libx11: Update to 1.7.3.1.Maxim Cournoyer
This update eliminates multiple xkbcomp unresolved symbols warnings. * gnu/packages/xorg.scm (libx11): Update to 1.7.3.1. Fix indentation. [source]: Update origin's URI.
2022-01-10sitecustomize.py: Honor .pth files.Maxim Cournoyer
Fixes <https://issues.guix.gnu.org/52269>. * gnu/packages/aux-files/python/sitecustomize.py: Use site.addsitedirs to add the site directories; this takes care of the .pth files. Make sure the added items still appear before Python's own 'site-packages' directory.
2022-01-10gnu: i2c-tools: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/linux.scm (i2c-tools)[arguments]: Use #$output to fix cross-compilation.
2022-01-10gnu: Add xfel.Danny Milosavljevic
* gnu/packages/admin.scm (xfel): New variable.
2022-01-10news: Add news entry about 'guix style'.Ludovic Courtès
* etc/news.scm: Add entry.
2022-01-10style: '-S format' canonicalizes comments.Ludovic Courtès
* guix/scripts/style.scm (canonicalize-comment): New procedure. (pretty-print-with-comments): Add #:format-comment. and honor it. (object->string*): Add 'args' and honor them. (format-package-definition): Pass #:format-comment to 'object->string*'. * tests/style.scm ("pretty-print-with-comments, canonicalize-comment"): New test.
2022-01-10style: Add '--styling' option.Ludovic Courtès
* guix/scripts/style.scm (format-package-definition): New procedure. (%options, show-help): Add "--styling". (%default-options): Add 'styling-procedure'. (guix-style): Honor it. * tests/style.scm (with-test-package) ("input labels, 'safe' policy") ("input labels, 'safe' policy, nothing changed") ("input labels, margin comment") ("input labels, margin comment on long list") ("input labels, line comment") ("input labels, modify-inputs and margin comment"): Pass "-S inputs". * etc/indent-code.el: Remove. * doc/contributing.texi (Formatting Code): Mention "guix style" instead of "etc/indent-code.el". (Submitting Patches): Add item for "guix style". * doc/guix.texi (Invoking guix style): Document "-S" and update.
2022-01-10style: Add support for "newline forms".Ludovic Courtès
This allows us to express cases where a newline should be inserted immediately after the head symbol of a list. * guix/scripts/style.scm (%newline-forms): New variable. (newline-form?): New procedure. (pretty-print-with-comments): Handle "newline forms". * tests/style.scm: Add test.
2022-01-10style: Allow special forms to be scoped.Ludovic Courtès
* guix/scripts/style.scm (vhashq): Add clause for 'lst, and change default clause. (%special-forms): Add context for 'add-after and 'add-before. Add 'replace. (prefix?, special-form-lead): New procedures. (special-form?): Remove. (pretty-print-with-comments): Add 'context' to the threaded state. Adjust 'print-sequence' and adjust 'loop' calls accordingly. * tests/style.scm: Add tests for 'replace.
2022-01-10style: Improve pretty printer and add tests.Ludovic Courtès
* guix/scripts/style.scm (vhashq): New macro. (%special-forms): New variable. (special-form?): New procedure. (pretty-print-with-comments): Add many clauses and tweak existing rules. * tests/style.scm (test-pretty-print): New macro. <top level>: Add 'test-pretty-print' tests.
2022-01-10gnu: julia-simd: Update to 3.4.0.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-simd): Update to 3.4.0.
2022-01-10gnu: Add julia-bioalignments.zimoun
* gnu/packages/julia-xyz.scm (julia-bioalignments): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-01-10gnu: Add julia-intervaltrees.zimoun
* gnu/packages/julia-xyz.scm (julia-intervaltrees): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-01-10gnu: Add julia-biosequences.zimoun
* gnu/packages/julia-xyz.scm (julia-biosequences): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2022-01-10gnu: Add julia-biosymbols.zimoun
* gnu/packages/julia-xyz.scm (julia-biosymbols): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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