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2022-03-15gnu: r-doby: Update to 4.6.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-doby): Update to 4.6.12. [propagated-inputs]: Remove r-curry.
2022-03-15gnu: r-insight: Update to 0.16.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.16.0.
2022-03-15gnu: r-rdpack: Update to 2.1.4.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 2.1.4.
2022-03-15gnu: r-fst: Update to 0.9.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-fst): Update to 0.9.8. [propagated-inputs]: Add r-fstcore.
2022-03-15gnu: r-dosnow: Update to 1.0.20.Ricardo Wurmus
* gnu/packages/cran.scm (r-dosnow): Update to 1.0.20.
2022-03-15gnu: r-parsedate: Update to 1.3.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parsedate): Update to 1.3.0. [propagated-inputs]: Remove r-rematch2.
2022-03-15gnu: r-tinytex: Update to 0.37.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.37.
2022-03-15gnu: r-pillar: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-pillar): Update to 1.7.0.
2022-03-15gnu: r-seriation: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-seriation): Update to 1.3.2.
2022-03-15gnu: r-tsp: Update to 1.2-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-tsp): Update to 1.2-0.
2022-03-15gnu: r-cli: Update to 3.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-cli): Update to 3.2.0.
2022-03-15gnu: r-jomo: Update to 2.7-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-jomo): Update to 2.7-3. [propagated-inputs]: Add r-tibble.
2022-03-15gnu: r-recipes: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-recipes): Update to 0.2.0. [propagated-inputs]: Add r-hardhat.
2022-03-15gnu: r-generics: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-generics): Update to 0.1.2.
2022-03-15gnu: r-gower: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-gower): Update to 1.0.0.
2022-03-15gnu: r-magic: Update to 1.6-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-magic): Update to 1.6-0.
2022-03-15gnu: r-cvst: Update to 0.2-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-cvst): Update to 0.2-3.
2022-03-15gnu: r-circlize: Update to 0.4.14.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.14.
2022-03-15gnu: r-rcppthread: Update to 2.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppthread): Update to 2.0.2.
2022-03-15gnu: r-glue: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): Update to 1.6.2.
2022-03-15gnu: r-colorspace: Update to 2.0-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-colorspace): Update to 2.0-3.
2022-03-15gnu: r-jsonlite: Update to 1.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-jsonlite): Update to 1.8.0.
2022-03-15gnu: r-ashr: Update to 2.2-54.Ricardo Wurmus
* gnu/packages/cran.scm (r-ashr): Update to 2.2-54.
2022-03-15gnu: r-clipr: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-clipr): Update to 0.8.0.
2022-03-15gnu: r-v8: Update to 4.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.1.0.
2022-03-15gnu: Add r-fstcore.Ricardo Wurmus
* gnu/packages/cran.scm (r-fstcore): New variable.
2022-03-15gnu: Add r-spatstat-random.Ricardo Wurmus
* gnu/packages/cran.scm (r-spatstat-random): New variable.
2022-03-15gnu: r-torch: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-torch): Update to 0.7.0.
2022-03-15gnu: liblantern: Update to 0.7.0.Ricardo Wurmus
* gnu/packages/machine-learning.scm (liblantern): Update to 0.7.0.
2022-03-15gnu: python-pytorch-for-r-torch: Reuse python-pytorch.Ricardo Wurmus
* gnu/packages/machine-learning.scm (python-pytorch-for-r-torch): Use definition on python-pytorch, thereby updating to 1.10.2.
2022-03-15gnu: r-leaflet: Update to 2.1.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-leaflet): Update to 2.1.0.
2022-03-15gnu: apache-arrow: Update to 7.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 7.0.0.
2022-03-15gnu: r-shinyjqui: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyjqui): Update to 0.4.1. [source]: Delete minified JavaScript file. [arguments]: Minify additional JavaScript file from source. [propagated-inputs]: Add r-rlang. [native-inputs]: Add jquery.ui.touch-punch.js.
2022-03-15images: novena: Fix build.Mathieu Othacehe
* gnu/system/images/novena.scm (novena-barebones-os)[kernel]: Use the linux-libre-arm-generic kernel. [initrd-modules]: Do not specify any modules as sdhci-esdhc-imx, ahci_imx and i2c-dev are built-in in the arm-generic kernel.
2022-03-14gnu: diffoscope: Update to 207.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 207.
2022-03-14gnu: crypto++: Update to 8.6.0.Brendan Tildesley
* gnu/packages/crypto.scm (crypto++): Update to 8.6.0. Note: This release includes a fix for a bug where code using AVX2 instructions produced incorrect encrypted files: https://github.com/weidai11/cryptopp/issues/1069 Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-14transformations: '--tune' prints supported micro-architectures upon error.Ludovic Courtès
* guix/transformations.scm (build-system-with-tuning-compiler): Add &fix-hint condition when asked for an unsupported micro-architecture.
2022-03-14gnu: gcc@11: Inherit supported micro-architectures from gcc@10.Ludovic Courtès
Previously, gcc@11 would inherit the 'compiler-cpu-architectures' property from gcc@8. * gnu/packages/gcc.scm (gcc-11)[properties]: New field.
2022-03-14gnu: ocaml-lacaml: Do not build with "-march=native".Ludovic Courtès
* gnu/packages/ocaml.scm (ocaml-lacaml)[origin]: Add 'snippet'. [properties]: New field.
2022-03-14build-system/ocaml: Use standard packages as "build inputs".Ludovic Courtès
Conceptually, "standard packages" (GCC, Coreutils, etc.) are "build inputs". In the absence of cross-compilation support, this change has no effect, except for things like '--tune' that expect the compiler to be among the build inputs. * guix/build-system/ocaml.scm (lower): Move (standard-packages) from 'host-inputs' to 'build-inputs'.
2022-03-14gnu: rtl-sdr: Fix udev rules.Guillaume Le Vaillant
This is a followup to bcc13ee8a19b09ae880ebb18e5a0cc75a9219a14. * gnu/packages/radio.scm (rtl-sdr)[arguments]: Add 'fix-udev-rules' phase.
2022-03-14gnu: gcompris-qt: Update to 2.3.Efraim Flashner
* gnu/packages/education.scm (gcompris-qt): Update to 2.3.
2022-03-14gnu: rtl-sdr: Update to 0.6.0.1-5e73f90.Guillaume Le Vaillant
* gnu/packages/radio.scm (rtl-sdr): Update to 0.6.0.1-5e73f90.
2022-03-14gnu: coeurl: Add source file-name.Efraim Flashner
* gnu/packages/curl.scm (coeurl)[source]: Add file-name field.
2022-03-14gnu: isc-dhcp: Fix cross-compilation.Mathieu Othacehe
* gnu/packages/admin.scm (isc-dhcp)[inputs]: Move config to ... [native-inputs]: ... here.
2022-03-13gnu: Add python-ansicolors.Pradana AUMARS
* gnu/packages/python-xyz.scm (python-ansicolors): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13gexp: Correctly handle #$output in 'gexp->approximate-sexp'.Maxime Devos
This addresses the following backtrace from "guix lint -c wrapper-inputs hostapd": Backtrace:ostapd@2.10 [wrapper-inputs]... [...] 174:9 3 (gexp->approximate-sexp #<gexp (modify-phases %standard?>) In srfi/srfi-1.scm: 586:17 2 (map1 (#<gexp-output out> #<gexp-input "pkg-config":o?>)) In guix/gexp.scm: 175:16 1 (_ _) In ice-9/boot-9.scm: 1685:16 0 (raise-exception _ #:continuable? _) ice-9/boot-9.scm:1685:16: In procedure raise-exception: Throw to key `match-error' with args `("match" "no matching pattern" #<gexp-output out>)'. * guix/gexp.scm (gexp->approximate-sexp): Handle the case where 'reference' is a <gexp-output>,, by returning (*approximate*). * tests/gexp.scm ("gexp->approximate-sexp, outputs"): Test it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13gexp: Correctly handle unquoting S-exp objects.Maxime Devos
This fixes a false-positive in the linter: guix lint -c 'wrapper-inputs' libaio * guix/gexp.scm (gexp->approximate-sexp): Allow the 'thing' in <gexp-input> to be a sexp, without approximation, by testing if it is a record. * tests/gexp.scm ("unquoted sexp (not a gexp!)"): Test it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13gnu: elixir: Don't fix Git executable location during Elixir build.Cees de Groot
The removed code below affected two locations where Elixir uses Git: * At build-time, Git is used to see if the build is inside a Git repo and if so, git info is added to the build information that Elixir returns with `System.build_info()`. The code uses PATH + `git` so the Git version from the inputs is used which is just fine. * At run-time, Git is used by Mix if, and only if, there are any Git-based dependencies. This is not the normal case, and in that sense Git is an optional dependency of Elixir - most projects will work just fine without Git being present. Here, too, PATH + `git` is used so if there is a need on a user's system to use Git-based dependencies, the user can just add the package to the profile and things will just work. I feel that leaving this alone is cleaner than trying to fix the dependency (if we want to keep it, it needs to be in propagated-inputs in order to keep Git around; I stumbled upon this building a project with Git dependencies after doing a `guix gc`. However, given that using Git dependencies is the exception and I think that minimizing dependencies is nicer I opted to just remove the substition completely). * gnu/packages/elixir.scm (elixir)[arguments]: In 'replace-paths' phase, remove substitutions of "git". Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-03-13gnu: maven: Update to 3.8.5.Julien Lepiller
* gnu/packages/maven.scm (maven-pom): Update to 3.8.5. (maven-model-builder)[arguments]: Build from the subdirectory to work around a test issue. (maven-3.0-model-builder)[arguments]: Fix accordingly.
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