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2023-04-21gnu: zeitgeist: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (zeitgeist) [arguments]: Remove patch-docbook-xml phase. Use gexps. [native-inputs]: Add libxml2.
2023-04-21gnu: dee: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (dee) [arguments]: Remove patch-docbook-xml phase. Use gexps. [native-inputs]: Remove labels. Add libxml2. [inputs]: Remove labels.
2023-04-21gnu: libdmapsharing: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (libdmapsharing) [arguments]: Remove patch-docbook-xml phase. Use gexps. [inputs]: Remove labels.
2023-04-21gnu: seed: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (seed) [arguments]: Remove patch-docbook-xml phase. Use gexps. [native-inputs, inputs, propagated-inputs]: Remove labels.
2023-04-21gnu: libgrss: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (libgrss) [arguments]: Remove patch-docbook-xml phase. Use gexps.
2023-04-21gnu: gupnp-igd: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gnome.scm (gupnp-igd) [arguments]: Remove patch-docbook-xml phase. [native-inputs]: Add libxml2.
2023-04-21gnu: libsigc++-2: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/glib.scm (libsigc++-2) [arguments]: Remove patch-docbook-xml phase. Remove trailing #t. Use gexps.
2023-04-21gnu: libsigc++: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/glib.scm (libsigc++) [arguments]: Remove patch-docbook-xml phase. Remove trailing #t. Use gexps. [native-inputs]: Remove labels.
2023-04-21gnu: po4a: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/gettext.scm (po4a) [arguments]: Remove patch-docbook-xml phase. Remove trailing #t. Use gexps. [native-inputs]: Remove labels.
2023-04-21gnu: memphis: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/geo.scm (memphis) [arguments]: Remove patch-docbook-xml phase. [native-inputs]: Remove labels. Add libxml2.
2023-04-21gnu: accountsservice: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/freedesktop.scm (accountsservice) [arguments]: Remove patch-docbook-xml phase.
2023-04-21gnu: farstream: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/freedesktop.scm (farstream) [arguments]: Remove patch-docbook-xml phase. [native-inputs]: Add libxml2.
2023-04-21gnu: libical: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/calendar.scm (libical) [arguments]: Remove patch-docbook-xml phase.
2023-04-21gnu: glib-with-documentation: Remove patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/glib.scm (glib-with-documentation) [arguments]: Remove patch-docbook-xml phase. [native-inputs]: Use modify-inputs. Remove labels.
2023-04-21gnu: docbook-xml-5: Make it the default docbook-xml.Maxim Cournoyer
* gnu/packages/docbook.scm (docbook-xml-5): Rename to... (docbook-xml): ... this, renaming the previous one to... (docbook-xml-4.5): ... this. (docbook2x) [inputs]: Replace docbook-xml with docbook-xml-4.5. * gnu/packages/freedesktop.scm (wayland) [native-inputs]: Likewise. * gnu/packages/freedesktop.scm (elogind): Likewise. * gnu/packages/databases.scm (postgresql-15): Likewise. * gnu/packages/documentation.scm (asciidoc): Likewise. * gnu/packages/networking.scm (iputils) [native-inputs]: Replace docbook-xml-5 with docbook-xml.
2023-04-21gnu: docbook-xml-5: Update to 5.1.Maxim Cournoyer
* gnu/packages/docbook.scm (docbook-xml-5): Update to 5.1.
2023-04-21gnu: wayland: Update to 1.22.0.Maxim Cournoyer
* gnu/packages/freedesktop.scm (wayland): Update to 1.22.0.
2023-04-21gnu: wayland: Drop patch-docbook-xml phase.Maxim Cournoyer
* gnu/packages/freedesktop.scm (wayland) [arguments]: Use gexps. Remove patch-docbook-xml phase. [native-inputs]: Remove input labels.
2023-04-21gnu: docbook-xml-4.1.2: Add missing catalog.xml.Bruno Victal
* gnu/packages/aux-files/xml/docbook-xml/catalog-4.1.2.xml: New file. * Makefile.am: Register it. * gnu/packages/docbook.scm (docbook-xml-4.1.2)[arguments]: Use prebuilt catalog.xml. [native-inputs]: Add libxml2. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-21gnu: docbook-xml: Use XSLT to patch catalog.xml.Bruno Victal
(sxml transforms) are unsuited here due to guile-bug #20339. * gnu/packages/aux-files/xml/patch-catalog-xml.xsl: New file. * Makefile.am: Register it. * gnu/packages/docbook.scm (docbook-xml-5)[native-inputs]: Add libxslt. [arguments]: Add phase to patch catalog.xml using XSLT. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-21gnu: docbook-xml: Fix permissions.Bruno Victal
* gnu/packages/docbook.scm (docbook-xml-5) [arguments]: Remove unnecessary executable permissions. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-21gnu: docbook-xml: Use copy-build-system.Bruno Victal
* gnu/packages/docbook.scm (docbook-xml-5)[build-system]: Switch to copy-build-system. [source][arguments]: Adapt to copy-build-system. (docbook-xml)[arguments]: Remove. [source]: Switch to url-fetch/zipbomb. (docbook-xml-4.4)[source]: Switch to url-fetch/zipbomb. (docbook-xml-4.3)[source]: Switch to url-fetch/zipbomb. (docbook-xml-4.2)[source]: Switch to url-fetch/zipbomb. (docbook-xml-4.1.2)[arguments]: Remove. [source]: Switch to url-fetch/zipbomb. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-20gnu: python-numexpr: Update to 2.8.4.John Kehayias
* gnu/packages/python-xyz.scm (python-numexpr): Update to 2.8.4.
2023-04-20gnu: python-singledispatch: Update to 4.0.0.John Kehayias
* gnu/packages/python-xyz.scm (python-singledispatch): Update to 4.0.0. [build-system]: Switch to pyproject-build-system. [native-inputs]: Add python-pytest.
2023-04-20gnu: python-pytest-flakes: Update to 4.0.5.John Kehayias
* gnu/packages/check.scm (python-pytest-flakes): Update to 4.0.5. [native-inputs]: Remove python-pytest-cache.
2023-04-20Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-20gnu: sbcl-quri: Update to 0.7.0.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-quri): Update to 0.7.0.
2023-04-20gnu: python-unittest2: Adjust patch for Python 3.10 compatibility.Ludovic Courtès
* gnu/packages/patches/python-unittest2-python3-compat.patch: Add hunk for Python 3.10 compatibility.
2023-04-20gnu: grpc: Build against 'abseil-cpp-cxxstd11'.Ludovic Courtès
* gnu/packages/rpc.scm (grpc)[inputs]: Use ABSEIL-CPP-CXXSTD11.
2023-04-20gnu: abseil-cpp: Add variant for C++11.Ludovic Courtès
* gnu/packages/cpp.scm (abseil-cpp-for-c++-standard): New procedure. (abseil-cpp-cxxstd17): Use it. (abseil-cpp-cxxstd11): New variable.
2023-04-20gnu: Add r-tidygeocoder.Navid Afkhami
* gnu/packages/cran.scm (r-tidygeocoder): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-20gnu: poke: Update to 3.1.Andy Tai
* gnu/packages/engineering.scm (poke): Update to 3.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2023-04-19Revert "gnu: libsoup: Depend on Samba only on supported systems."Maxim Cournoyer
This reverts commit 1344c3388a87d427209f63bdbfacabbd4c0a1033. It was fixed lower in the graph (in samba) on the master branch with commit 813d670b151b06181fd045d6e00104f3da63f4a0 ("gnu: samba: Make the python-cryptography input conditional.").
2023-04-19gnu: borgmatic: Update to 1.7.12.Fabio Natali
* gnu/packages/backup.scm (borgmatic): Update to 1.7.12. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-04-19gnu: stellarium: Update to 23.1 [fixes CVE-2023-28371].Sharlatan Hellseher
Upstream introduced new versioning model <year>.<release> * gnu/packages/astronomy.scm (stellarium): Update to 23.1. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-04-19gnu: calcmysky: Update to 0.3.0.Sharlatan Hellseher
* gnu/packages/astronomy.scm (calcmysky): Update to 0.3.0. Signed-off-by: Leo Famulari <leo@famulari.name>
2023-04-19gnu: gnutls: Extend test timeout on powerpc-linux.Efraim Flashner
* gnu/packages/tls.scm (gnutls)[arguments]: When building for powerpc-linux add a phase to extend the test timeout.
2023-04-19gnu: ultrastar-deluxe: Build with ffmpeg-5.Efraim Flashner
* gnu/packages/games.scm (ultrastar-deluxe)[inputs]: Replace ffmpeg with ffmpeg-5.
2023-04-19gnu: guix: Update to 1.4.0-5.286cdf0.Maxim Cournoyer
* gnu/packages/package-management.scm (guix): Update to 1.4.0-5.286cdf0.
2023-04-19tests: guix-system: Drop the i686-linux desktop image test.Maxim Cournoyer
Desktop these days means having Rust support (GNOME), which i686 currently lacks on Guix. * tests/guix-system.sh: Do not attempt to build the desktop.tmpl image for i686-linux.
2023-04-19gnu: samba: Update to 4.18.1 [security fixes].John Kehayias
Fixes CVE-2023-0922 and CVE-2023-0614. * gnu/packages/samba.scm (samba): Update to 4.18.1. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com> Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-04-19gnu: samba: Make the python-cryptography input conditional.Maxim Cournoyer
* gnu/packages/samba.scm (samba/pinned) [arguments]: Conditionally enable self tests in configure phase. [native-inputs]: Conditionally add python-cryptography. Reported-by: John Kehayias <john.kehayias@protonmail.com>
2023-04-19tests: Fix texlive->guix-package test.Maxim Cournoyer
The home page for the package had changed. * tests/texlive.scm ("texlive->guix-package"): Match the home-page and synopsis inexactly to avoid future similar breakages.
2023-04-19tests: Re-add debug output to a package tests.Maxim Cournoyer
* tests/packages.scm ("fold-available-packages with/without cache"): Re-introduce debugging output.
2023-04-19gnu: r-dmrseq: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dmrseq): Update to 1.18.1.
2023-04-19gnu: r-beachmat: Update to 2.14.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.14.2.
2023-04-19gnu: r-gdsfmt: Update to 1.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.34.1.
2023-04-19gnu: r-ebimage: Update to 4.40.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ebimage): Update to 4.40.1.
2023-04-19gnu: r-enrichplot: Update to 1.18.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.18.4.
2023-04-19gnu: r-structuralvariantannotation: Update to 1.14.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.14.1.
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