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2018-03-07gnu: glibmm: Update to 2.54.1.Marius Bakke
* gnu/packages/glib.scm (glibmm): Update to 2.54.1. [arguments]: Add #:configure-flags.
2018-03-07gnu: Add r-colorout.Oleg Pykhalov
* gnu/packages/statistics.scm (r-colorout): New public variable.
2018-03-07gnu: youtube-viewer: Add '$out/lib/perl5/site_perl/' to search path.Alex Vong
Fixes <https://bugs.gnu.org/30671>. Reported by Ricardo Wurmus <rekado@elephly.net>. * gnu/packages/video.scm (youtube-viewer)[arguments]: In 'wrap-program' phase, add '$out/lib/perl5/site_perl/' to search path. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07gnu: Add IBM Plex font.Charlie Ritter
* gnu/packages/fonts.scm (font-ibm-plex): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2018-03-07linux-initrd: Add a hint for the missing module error.Ludovic Courtès
* gnu/system/linux-initrd.scm (check-device-initrd-modules): Add a '&fix-hint'.
2018-03-07ui: 'display-hint' preserves Texinfo formatting.Ludovic Courtès
The previous method would mess up with @example formatting, for instance. * guix/ui.scm (display-hint): Parameterize '%text-width' instead of using 'fill-paragraph'.
2018-03-07ui: Display fix hints in the case where we have location info.Ludovic Courtès
* guix/ui.scm (call-with-error-handling): Display fix-hints in the error + message case.
2018-03-07linux-initrd: Factorize 'check-device-initrd-modules'.Ludovic Courtès
* gnu/system/mapped-devices.scm (check-device-initrd-modules): Move to... * gnu/system/linux-initrd.scm (check-device-initrd-modules): ... here. New procedure. * po/guix/POTFILES.in: Add it. * guix/scripts/system.scm (check-initrd-modules)[check-device]: Remove. Use 'check-device-initrd-modules' instead.
2018-03-07services: file-systems: Include 'user-file-systems' service.Ludovic Courtès
Previously the KNOWN-FS value used in 'essential-services' would be incomplete: it would lack all the file systems provided by services that extend 'file-system-service-type' (/sys/fs/cgroup, /proc/sys/fs/binfmt_misc, etc.) Consequently, upon shutdown, 'user-processes' would unmount these file systems before their corresponding service had been stopped; when their corresponding (e.g., 'file-system-/proc/sys/fs/binfmt_misc') was stopped, its 'umount' call would fail. This was harmless in practice, but this patch makes sure things work as intended and file systems are unmounted in the right order. * gnu/services/base.scm (file-system-shepherd-services): Instantiate 'user-file-systems' Shepherd service from here. (user-unmount-service-type, user-unmount-service): Remove. * gnu/system.scm (essential-services): Remove call to 'user-unmount-service'. * gnu/system/install.scm (cow-store-service-type): Adjust comment.
2018-03-07services: dicod: Depend on 'user-processes'.Ludovic Courtès
* gnu/services/dict.scm (dicod-shepherd-service): Add 'requirement'.
2018-03-06gnu: thefuck: Update to 3.25.Eric Bavier
* gnu/packages/admin.scm (thefuck): Update to 3.25 [inputs]: Add python-pyte. [native-inputs]: Remove python-setuptools. * gnu/packages/patches/thefuck-test-environ.patch: Adjust to latest source.
2018-03-06gnu: Add maven-resolver-connector-basic.Julien Lepiller
* gnu/packages/maven.scm (maven-resolver-connector-basic): New variable.
2018-03-06gnu: Add maven-resolver-util.Julien Lepiller
gnu/packages/maven.scm (maven-resolver-util): New variable.
2018-03-06gnu: Add maven-resolver-test-util.Julien Lepiller
* gnu/packages/maven.scm (maven-resolver-test-util): New variable.
2018-03-06gnu: Add maven-resolver-spi.Julien Lepiller
* gnu/packages/maven.scm (maven-resolver-spi): New variable.
2018-03-06gnu: Add maven-resolver-api.Julien Lepiller
* gnu/packages/maven.scm: New file. (maven-resolver-api): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-03-06gnu: isc-dhcp: Update to 4.3.6-P1 [fixes CVE-2018-{5732,5733}].Leo Famulari
* gnu/packages/admin.scm (isc-dhcp): Update to 4.3.6-P1.
2018-03-06gnu: syncthing: Update to 0.14.45.Leo Famulari
* gnu/packages/syncthing.scm (syncthing): Update to 0.14.45. [inputs]: Remove go-github-com-xtaci-kcp-go, go-github-com-ccding-go-stun, and go-github-com-xtaci-smux. Add go-github-com-pkg-errors.
2018-03-06gnu: Remove go-github-com-templexxx-xor.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-templexxx-xor): Remove variable.
2018-03-06gnu: Remove go-github-com-templexxx-cpufeat.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-templexxx-cpufeat): Remove variable.
2018-03-06gnu: Remove go-github-com-tjfoc-gmsm-sm4.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-tjfoc-gmsm-sm4): Remove variable.
2018-03-06gnu: Remove go-github-com-klauspost-reedsolomon.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-klauspost-reedsolomon): Remove variable.
2018-03-06gnu: Remove go-github-com-klauspost-cpuid.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-klauspost-cpuid): Remove variable.
2018-03-06gnu: Remove go-github-com-ccding-go-stun.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-ccding-go-stun): Remove variable.
2018-03-06gnu: Remove go-github-com-xtaci-kcp-go.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-xtaci-kcp-go): Remove variable.
2018-03-06gnu: Remove go-github-com-xtaci-smux.Leo Famulari
* gnu/packages/syncthing.scm (go-github-com-xtaci-smux): Remove variable.
2018-03-06gnu: re2: Update to 2018-03-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2018-03-01.
2018-03-06gnu: feh: Update to 2.25.Marius Bakke
* gnu/packages/image-viewers.scm (feh): Update to 2.25.
2018-03-06gnu: iceauth: Update to 1.0.8.Marius Bakke
* gnu/packages/xorg.scm (iceauth): Update to 1.0.8.
2018-03-06gnu: python-django: Update to 1.11.11 [fixes CVE-2018-7536 and CVE-2018-7537].Marius Bakke
See <https://www.djangoproject.com/weblog/2018/mar/06/security-releases/> for more information about the vulnerabilities. * gnu/packages/django.scm (python-django): Update to 1.11.11.
2018-03-06gnu: samtools: Update to 1.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): Update to 1.7.
2018-03-06gnu: htslib: Update to 1.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.7. [arguments]: Remove field.
2018-03-06gnu: r-rhdf5: Make build reproducible.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhdf5)[arguments]: Remove timestamp and host system information from settings file.
2018-03-06gnu: r-lambda-r: Run unit tests.Ricardo Wurmus
* gnu/packages/statistics.scm (r-lambda-r)[native-inputs]: Add r-runit. [arguments]: Add build phase to delete test logs.
2018-03-06gnu: r-gtools: Make output deterministic.Ricardo Wurmus
* gnu/packages/statistics.scm (r-gtools)[arguments]: Add build phase to avoid running tempdir at build time.
2018-03-06ui: 'load*' no longer fails on Guile 2.2.3 upon EACCES or similar.Ludovic Courtès
Previously, if ~/.cache was not write-accessible, 'guix' would exit with code 1 without printing any message. That was because the 'make-stack' call would fail since the exception (a 'system-error) came from 'compile-file', which was called at a point where TAG wasn't installed yet. Secondly, to mimick auto-compilation behavior, we just swallow 'system-error raised by 'compile-file'. Reported by Clément Lassieur. * guix/ui.scm (load*): Move 'compile-file' call in the dynamic extent of TAG. Catch 'system-error around it and ignore it.
2018-03-06gnu: emacs-transmission: Update to 0.12.1.Oleg Pykhalov
* gnu/packages/emacs.scm (emacs-transmission): Update to 0.12.1.
2018-03-06gnu: haskell-mode: Fix find emacs-stream elisp directory.Oleg Pykhalov
* gnu/packages/emacs.scm (haskell-mode)[arguments]: Find only directories with "\\.el$" in ‘el-dir’.
2018-03-06gnu: ovmf: Fix build and add FIXME.Rutger Helling
* gnu/packages/firmware.scm (ovmf): Replace 'invoke' with 'system*'. Add FIXME about failing script.
2018-03-05gnu: java-ops4j-pax-tinybundles: Use distribution bndlib version.Gábor Boskovits
* gnu/packages/java.scm (java-ops4j-pax-tinybundles)[arguments]<#:phases>: Modify fix-version to use the distibution version of java-aqute-bndlib.
2018-03-05gnu: perl-email-address: Update to 1.909.Tobias Geerinckx-Rice
* gnu/packages/perl.scm (perl-email-address): Update to 1.909.
2018-03-05gnu: perl-sub-quote: Update to 2.005000.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-sub-quote): Update to 2.005000.
2018-03-05gnu: perl-xml-compile-cache: Update to 1.06.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-compile-cache): Update to 1.06.
2018-03-05gnu: perl-xml-rss: Update to 1.60.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-rss): Update to 1.60.
2018-03-05gnu: editres: Update to 1.0.7.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (editres): Update to 1.0.7.
2018-03-05gnu: tocc, libtocc: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/search.scm (libtocc, tocc)[home-page]: Use HTTPS.
2018-03-05gnu: perl-io-socket-ip: Update to 0.39.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-io-socket-ip): Update to 0.39.
2018-03-05gnu: perl-www-mechanize: Update to 1.87.Tobias Geerinckx-Rice
* gnu/packages/web.scm (perl-www-mechanize): Update to 1.87.
2018-03-05gnu: openvpn: Mark up description.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openvpn)[description]: Use @dfn.
2018-03-05gnu: openvpn: Update to 2.4.5.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openvpn): Update to 2.4.5.
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