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2022-05-28gnu: r-hardyweinberg: Update to 1.7.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.7.5.
2022-05-28gnu: r-pdist: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-pdist): Update to 1.2.1.
2022-05-28gnu: r-broom: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-broom): Update to 0.8.0.
2022-05-28gnu: r-psych: Update to 2.2.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-psych): Update to 2.2.5.
2022-05-28gnu: r-geometry: Update to 0.4.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-geometry): Update to 0.4.6.
2022-05-28gnu: r-energy: Update to 1.7-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-energy): Update to 1.7-10.
2022-05-28gnu: r-bbmle: Update to 1.0.25.Ricardo Wurmus
* gnu/packages/cran.scm (r-bbmle): Update to 1.0.25.
2022-05-28gnu: r-extremes: Update to 2.1-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-extremes): Update to 2.1-2.
2022-05-28gnu: r-rmtstat: Update to 0.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-rmtstat): Update to 0.3.1.
2022-05-28gnu: r-sp: Update to 1.4-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-sp): Update to 1.4-7.
2022-05-28gnu: r-restrserve: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-restrserve): Update to 1.1.1. [propagated-inputs]: Add r-digest.
2022-05-28gnu: r-reshape: Update to 0.8.9.Ricardo Wurmus
* gnu/packages/cran.scm (r-reshape): Update to 0.8.9. [propagated-inputs]: Remove r-rcpp.
2022-05-28gnu: r-ff: Update to 4.0.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ff): Update to 4.0.7.
2022-05-28gnu: r-circlize: Update to 0.4.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.15.
2022-05-28gnu: r-rcppxptrutils: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-rcppxptrutils): Update to 0.1.2.
2022-05-28gnu: r-ps: Update to 1.7.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ps): Update to 1.7.0.
2022-05-28gnu: r-haven: Update to 2.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-haven): Update to 2.5.0. [propagated-inputs]: Add r-cli and r-lifecycle.
2022-05-28gnu: r-shinyfiles: Update to 0.9.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyfiles): Update to 0.9.2.
2022-05-28gnu: r-rstpm2: Update to 1.5.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-rstpm2): Update to 1.5.6.
2022-05-28gnu: r-fastghquad: Update to 1.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fastghquad): Update to 1.0.1.
2022-05-28gnu: r-vegan: Update to 2.6-2.Ricardo Wurmus
* gnu/packages/cran.scm (r-vegan): Update to 2.6-2.
2022-05-28gnu: r-astsa: Update to 1.15.Ricardo Wurmus
* gnu/packages/cran.scm (r-astsa): Update to 1.15.
2022-05-28gnu: r-shadowtext: Update to 0.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-shadowtext): Update to 0.1.2.
2022-05-28gnu: r-mboost: Update to 2.9-7.Ricardo Wurmus
* gnu/packages/cran.scm (r-mboost): Update to 2.9-7.
2022-05-28gnu: r-polychrome: Update to 1.5.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-polychrome): Update to 1.5.1.
2022-05-28gnu: r-scales: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-scales): Update to 1.2.0. [propagated-inputs]: Add r-rlang.
2022-05-28gnu: r-zoo: Update to 1.8-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-zoo): Update to 1.8-10.
2022-05-28gnu: r-v8: Update to 4.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-v8): Update to 4.2.0.
2022-05-28gnu: r-datawizard: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-datawizard): Update to 0.4.1.
2022-05-28gnu: r-abn: Update to 2.7-1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-abn): Update to 2.7-1.
2022-05-28gnu: r-ldheatmap: Update to 1.0-6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ldheatmap): Update to 1.0-6.
2022-05-28gnu: r-wgcna: Update to 1.71.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-wgcna): Update to 1.71.
2022-05-28gnu: r-activepathways: Update to 1.1.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.1.0.
2022-05-28gnu: r-with-tests: Update to 4.2.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 4.2.0. [arguments]: Add phase 'patch-tests; add phase 'set-home.
2022-05-28gnu: wget2: Reindent package.Efraim Flashner
* gnu/packages/wget.scm (wget2): Reindent package with 'guix style'.
2022-05-28gnu: wget2: Update to 2.0.1.Efraim Flashner
* gnu/packages/wget.scm (wget2): Update to 2.0.1. [arguments]: Remove trailing #t from phases.
2022-05-28gnu: mesa: Build with llvm on armhf-linux.Efraim Flashner
* gnu/packages/gl.scm (mesa)[inputs]: Add llvm for all architectures. [native-inputs]: Add glslang for all architectures. [arguments]: Adjust configure-flags to give armhf-linux its own gallium-drivers and enable llvm support. Rewrite portions that no longer depend on specific architectures to enable flags. Adjust custom 'disable-failing-test phase to skip a test on armhf-linux.
2022-05-28gnu: clang-from-llvm: Fix build on some architectures.Efraim Flashner
* gnu/packages/llvm.scm (clang-from-llvm)[arguments]: Adjust custom 'symlink-cfi_ignorelist phase to only symlink when the file exists.
2022-05-28gnu: quodlibet: Fix inputs.Liliana Marie Prikler
* gnu/packages/music.scm (quodlibet)[inputs]: Add bash-minimal for ‘wrap-program’. Remove extraneous gtk+.
2022-05-28gnu: Add quodlibet.Remco van 't Veer
* gnu/packages/music.scm (quodlibet): New variable. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28gnu: emacs-magit: Use directory excursions rather than wild chdir.Liliana Marie Prikler
* gnu/packages/emacs-xyz.scm (emacs-magit)[#:phases] <build-info-manual, configure-git>: Don't chdir. <set-magit-version, patch-exec-paths>: Use full file names. <enter-lisp-directory>: Drop phase. <expand-load-path, install>: Wrap in directory excursions.
2022-05-28gnu: emacs-magit: Drop the libgit backend.Zhu Zihao
The libgit backend currently provides next to no features, but demands extra maintenance overhead. It is in fact not a usable backend; thus let's not use it. * gnu/packages/emacs-xyz.scm (emacs-magit)[arguments] <#:emacs>: Drop argument. <#:exclude>: Add sources related to emacs-libgit. [inputs]: Remove emacs-libgit. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-28gnu: emacs-magit: Use G-expressions.Zhu Zihao
* gnu/packages/emacs-xyz.scm (emacs-magit)[arguments]: Use G-expressions. <#:phases>: Use search-input-file to find perl for ‘patch-exec-paths’. Signed-off-by: Liliana Marie Prikler <liliana.prikler@gmail.com>
2022-05-27gnu: diffoscope: Update to 214.Vagrant Cascadian
* gnu/packages/diffoscope.scm (diffoscope): Update to 214. [arguments]: Remove 'xb-tool-external-tool phase.
2022-05-28gnu: Add python-gatt.Wamm K. D
* gnu/packages/python-xyz.scm (python-gatt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27substitute: Check for --help or --version options early.yarl-baudig@mailoo.org
Running `guix archive --authorize` sets /etc/guix/acl to 600 via with-atomic-file-output via mkstemp!. Then running `guix substitute --help/--version` fails on "permission denied". While "guix substitute" is an internal tool, the options --help and --version exist and you should be able to run those from the command line. * guix/scripts/substitute.scm (guix-substitute): Earlier check for --help or --version. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: Add python-srt.Pradana AUMARS
* gnu/packages/python-xyz (python-srt): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: Add python-wasabi.Artyom V. Poptsov
* gnu/packages/python-xyz.scm (python-wasabi): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: emacs-evil-org: Update to 0d10ff7.jgart
* gnu/packages/emacs-xyz.scm (emacs-evil-org): Update to 0d10ff7. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-05-27gnu: emacs-detached: Update to 0.7.Niklas Eklund
* gnu/packages/emacs-xyz.scm (emacs-detached): Update to 0.7. (emacs-dtache): Define as a deprecated alias. I have both renamed the package dtache -> detached as well as moving the development from gitlab to sourcehut. This patch reflects those changes, as well as updating to the latest release of the package. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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