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2020-01-16guix package: Export 'transaction-upgrade-entry'.Ludovic Courtès
* guix/scripts/package.scm (transaction-upgrade-entry): Add 'store' parameter and use it instead of (%store). Export. * tests/packages.scm ("transaction-upgrade-entry, zero upgrades") ("transaction-upgrade-entry, one upgrade") ("transaction-upgrade-entry, superseded package"): Adjust accordingly.
2020-01-16publish: Export 'signed-string'.Ludovic Courtès
* guix/scripts/publish.scm (signed-string): Export and improve docstring. * tests/publish.scm ("/*.narinfo") ("/*.narinfo with properly encoded '+' sign"): Adjust accordingly.
2020-01-16gnu: Update copyright header.Nicolas Goaziou
* gnu/packages/python-xyz.scm: Update copyright header.
2020-01-16gnu: neomutt: Update to 20191207.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (neomutt): Update to 20191207.
2020-01-16gnu: lmdb: Update to 0.9.24.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (lmdb): Update to 0.9.24.
2020-01-16gnu: asymptote: Fix GUI.Nicolas Goaziou
Fixes bug#39147. * gnu/packages/plotutils.scm (asymptote)[inputs]: Add missing inputs. [arguments]: Wrap GUI executable "xasy".
2020-01-16gnu: Add python-cson.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-cson): New variable.
2020-01-16gnu: Add python-speg.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-speg): New variable.
2020-01-16repl: Fix '--help' message.zimoun
* guix/scripts/repl.scm: (show-help): Add '--listen' option message.
2020-01-16repl: Add '--load-path' option.zimoun
* guix/scripts/repl.scm (%option): Add '--load-path' option. * doc/guix.texi: Document it.
2020-01-16edit: Add '--load-path' option.zimoun
* guix/scripts/edit.scm (%option): Add '--load-path' option. * doc/guix.texi: Document it.
2020-01-16refresh: Add '--load-path' option.zimoun
* guix/scripts/refresh.scm (%option): Add '--load-path' option. * doc/guix.texi: Document it.
2020-01-16size: Add '--load-path' option.zimoun
* guix/scripts/size.scm (%option): Add '--load-path' option. * doc/guix.texi: Document it.
2020-01-16graph: Add '--load-path' option.Pierre Neidhardt
* guix/scripts/graph.scm (%option): Add '--load-path' option. * doc/guix.texi: Document it. * tests/guix-graph.sh: Test it.
2020-01-16gnu: cuirass: Update to 0.0.1-27.46f73b6.Christopher Baines
* gnu/packages/ci.scm (cuirass): Update to 0.0.1-27.46f73b6.
2020-01-16gnu: r-variancepartition: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-variancepartition): Update to 1.16.1.
2020-01-16gnu: r-flowworkspace: Update to 3.34.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 3.34.1.
2020-01-16gnu: r-ropls: Update to 1.18.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ropls): Update to 1.18.6.
2020-01-16gnu: r-mlinterfaces: Update to 1.66.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mlinterfaces): Update to 1.66.2. [propagated-inputs]: Remove r-rda.
2020-01-16gnu: r-clusterprofiler: Update to 3.14.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 3.14.3.
2020-01-16gnu: r-inspect: Update to 1.16.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-inspect): Update to 1.16.2.
2020-01-16gnu: r-regioner: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-regioner): Update to 1.18.1.
2020-01-16gnu: r-affycoretools: Update to 1.58.4.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.58.4. [propagated-inputs]: Add r-glimma.
2020-01-16gnu: r-delayedarray: Update to 0.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.12.2.
2020-01-16gnu: r-iranges: Update to 2.20.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.20.2.
2020-01-16gnu: r-s4vectors: Update to 0.24.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-s4vectors): Update to 0.24.2.
2020-01-16gnu: r-biocstyle: Update to 2.14.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.14.4.
2020-01-16gnu: r-poibin: Update to 1.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-poibin): Update to 1.5.
2020-01-16gnu: r-gdina: Update to 2.7.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-gdina): Update to 2.7.8.
2020-01-16gnu: r-desolve: Update to 1.27.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-desolve): Update to 1.27.1.
2020-01-16gnu: r-parameters: Update to 0.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): Update to 0.4.0.
2020-01-16gnu: r-umap: Update to 0.2.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-umap): Update to 0.2.4.1.
2020-01-16gnu: r-batchtools: Update to 0.9.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-batchtools): Update to 0.9.12.
2020-01-16gnu: r-rttf2pt1: Update to 1.3.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-rttf2pt1): Update to 1.3.8.
2020-01-16gnu: r-bookdown: Update to 0.17.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.17.
2020-01-16gnu: r-shinyjs: Update to 1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-shinyjs): Update to 1.1.
2020-01-16gnu: r-future-apply: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-future-apply): Update to 1.4.0.
2020-01-16gnu: r-tmb: Update to 1.7.16.Ricardo Wurmus
* gnu/packages/cran.scm (r-tmb): Update to 1.7.16.
2020-01-16gnu: r-multcomp: Update to 1.4-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-multcomp): Update to 1.4-12.
2020-01-16gnu: r-proc: Update to 1.16.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-proc): Update to 1.16.1.
2020-01-16gnu: r-sjmisc: Update to 2.8.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjmisc): Update to 2.8.3.
2020-01-16gnu: r-insight: Update to 0.8.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-insight): Update to 0.8.0.
2020-01-16gnu: r-hdf5r: Update to 1.3.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.1.
2020-01-16gnu: r-fansi: Update to 0.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-fansi): Update to 0.4.1.
2020-01-16gnu: r-bibtex: Update to 0.4.2.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-bibtex): Update to 0.4.2.2.
2020-01-16gnu: r-trend: Update to 1.1.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-trend): Update to 1.1.2.
2020-01-16gnu: r-tinytex: Update to 0.19.Ricardo Wurmus
* gnu/packages/cran.scm (r-tinytex): Update to 0.19.
2020-01-16gnu: r-xfun: Update to 0.12.Ricardo Wurmus
* gnu/packages/cran.scm (r-xfun): Update to 0.12.
2020-01-16gnu: r-cli: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-cli): Update to 2.0.1.
2020-01-16gnu: r-ggridges: Update to 0.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggridges): Update to 0.5.2.
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