Age | Commit message (Collapse) | Author |
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* gnu/packages/web.scm (nghttp2-1.40): New public variable.
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* gnu/packages/libevent.scm (libuv/latest): New public variable.
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* gnu/packages/opencl.scm (pocl)[inputs]: Change from LLVM-8 to LLVM.
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[[PGP Signed Part:No public key for F530C3B4A2A9F06D created at 2020-02-23T04:48:54+0100 using RSA]]
From 6c23c5966a3c7ed01c784874e410d5fe3009bfc5 Mon Sep 17 00:00:00 2001
From: Evan Straw <evan.straw99@gmail.com>
Date: Sat, 22 Feb 2020 19:47:19 -0800
Subject: [PATCH] gnu: Add emacs-company-emoji.
* gnu/packages/emacs-xyz.scm (emacs-company-emoji): New variable.
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* gnu/packages/bioinformatics.scm (proteinortho): Update to 6.0.14.
[source]: Fetch from git; remove pre-built scripts.
[arguments]: Set make-flags; update wrap-programs phase to wrap all scripts.
[inputs]: Add guile-3.0, diamond, python-wrapper, lapack, and openblas; remove
python-2.
[native-inputs]: Add which.
[license]: Update to GPLv3+
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.30.
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* gnu/packages/bioinformatics.scm (crossmap): Update to 0.3.8.
[arguments]: Remove to build with default Python.
[inputs]: Add python-pybigwig; replace python2-bx-python, python2-numpy, and
python2-pysam with their Python 3 variants.
[native-inputs]: Replace python2-cython and python2-nose with their Python 3
variants.
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* gnu/packages/crates-io.scm (rust-libressl-pnacl-sys-2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-pnacl-build-helper-1.4):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-zip-0.5): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-bzip2-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-partial-io-0.2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-winpty-sys-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-bindgen-0.33): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-cexpr-0.2): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-clang-sys-0.11): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-libloading-0.3): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-target-build-utils-0.3):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-json-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-linked-hash-map-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-macros-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-test-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-0.4): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-derive-0.9): New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/crates-io.scm (rust-serde-codegen-internals-0.14):
New variable.
Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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* gnu/packages/bioinformatics.scm (macs): Update to 2.2.6.
[source]: Fetch from git.
[arguments]: Enable tests, build with default Python.
[inputs]: Replace python2-numpy with python-numpy.
[native-inputs]: Add python-pytest.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-sqlite3, cl-dbd-sqlite3): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-postgres, cl-dbd-postgres): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbd-mysql, cl-dbd-mysql): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-dbi, cl-dbi): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-postmodern, cl-postmodern): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-s-sql, cl-s-sql): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-simple-date-postgres-glue,
cl-simple-date-postgres-glue): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-postgres, cl-postgres): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-simple-date, cl-simple-date,
ecl-simple-date): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-cl-mysql, cl-mysql): New variables.
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* gnu/packages/cran.scm (r-rstanarm): New variable.
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* gnu/packages/cran.scm (r-rstan): New variable.
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* gnu/packages/cran.scm (r-loo): New variable.
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* gnu/packages/cran.scm (r-rstantools): New variable.
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* gnu/packages/cran.scm (r-shinystan): New variable.
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* gnu/packages/cran.scm (r-dygraphs): New variable.
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* gnu/packages/bioinformatics.scm (python-loompy-for-pigx-scrnaseq): Remove
variable.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 1.1.3.
[arguments]: Remove.
[inputs]: Remove dropseq-tools and java-picard; add flexbar, jellyfish, and
r-seurat; replace python-loompy-for-pigx-scrnaseq with python-loompy.
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* gnu/packages/llvm.scm (clang-runtime-3.5)
[inputs]: Add libtirpc.
[arguments]: Add phase to find rpc headers.
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* gnu/packages/cran.scm (r-rsconnect): New variable.
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* gnu/packages/cran.scm (r-packrat): New variable.
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* gnu/packages/music.scm (zrythm): Update to 0.7.573.
Signed-off-by: Jakub Kądziołka <kuba@kadziolka.net>
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* gnu/packages/compression.scm (libzip): Update to 1.6.1.
[inputs]: Add XZ.
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