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2021-06-21gnu: r-monocle3: Update to 1.0.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-monocle3): Update to 1.0.0. [propagated-inputs]: Add r-batchelor, r-leidenbase, and r-rsample.
2021-06-21gnu: Add r-leidenbase.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-leidenbase): New variable.
2021-06-21gnu: Add r-batchelor.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-batchelor): New variable.
2021-06-21gnu: Add r-residualmatrix.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-residualmatrix): New variable.
2021-06-21gnu: r-monocle3: Add missing input.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-monocle3)[propagated-inputs]: Add r-assertthat.
2021-06-21gnu: python-cfn-lint: Update to 0.51.0.Ricardo Wurmus
* gnu/packages/python-web.scm (python-cfn-lint): Update to 0.51.0. [arguments]: Delete another test that attempts to access the internet.
2021-06-21gnu: python-pyyaml: Update to 5.4.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-pyyaml): Update to 5.4.1.
2021-06-21gnu: python-aws-sam-translator: Update to 1.36.0.Ricardo Wurmus
* gnu/packages/python-web.scm (python-aws-sam-translator): Update to 1.36.0.
2021-06-21gnu: rust-openssl-sys-0.9: Update to 0.9.64.Efraim Flashner
* gnu/packages/crates-io.scm (rust-openssl-sys-0.9): Update to 0.9.64.
2021-06-21gnu: mpfrcx: Update to 0.6.2.Andreas Enge
* gnu/packages/algebra.scm (mpfrcx): Update to 0.6.2.
2021-06-21gnu: Add eovim.Jack Hill
* gnu/packages/vim (eovim): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: mlt: Don't hardcode gcc value.Efraim Flashner
* gnu/packages/video.scm (mlt)[arguments]: Adjust make-flags to use cc-for-target, cxx-for-target.
2021-06-21gnu: Add shotcut.Vinicius Monego
* gnu/packages/video.scm (shotcut): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: mlt: Add optional dependencies.Vinicius Monego
* gnu/packages/video.scm (mlt)[inputs]: Add alsa-plugins:pulseaudio, libebur128, rtaudio, sdl2, sdl2-image, sox, vidstab. Remove sdl. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: mlt: Update to 6.26.1.Vinicius Monego
* gnu/packages/video.scm (mlt): Update to 6.26.1. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: mlt: Update license.Vinicius Monego
* gnu/packages/video.scm (mlt)[license]: Change from gpl3 to lgpl2.1+. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: moreutils: Remove obsolete source uri.Sergey Trofimov
* gnu/packages/moreutils.scm (moreutils): Remove obsolete origin uri as it returns 404. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: Add python-iced.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-iced): New variable.
2021-06-21gnu: python-argh: Remove python-tox.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-argh)[propagated-inputs]: Remove python-tox.
2021-06-21gnu: r-arrow: Add arrow libraries.Ricardo Wurmus
* gnu/packages/cran.scm (r-arrow)[inputs]: Add the lib output of apache-arrow.
2021-06-21gnu: apache-arrow: Update to 4.0.1.Ricardo Wurmus
* gnu/packages/databases.scm (apache-arrow): Update to 4.0.1. [arguments]: Remove trailing boolean; ensure that xsimd is not downloaded and built anew. [inputs]: Add xsimd.
2021-06-21gnu: Add cl-gserver.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-gserver, ecl-cl-gserver, sbcl-cl-gserver): New variables.
2021-06-21gnu: Add cl-hamt.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-hamt, ecl-cl-hamt, sbcl-cl-hamt): New variables.
2021-06-21gnu: Add cl-murmurhash.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-murmurhash, ecl-cl-murmurhash, sbcl-cl-murmurhash): New variables.
2021-06-21gnu: Add cl-mock.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-mock, ecl-cl-mock, sbcl-cl-mock): New variables.
2021-06-21gnu: Add atomics.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-atomics, ecl-atomics, sbcl-atomics): New variables.
2021-06-21gnu: Add binding-arrows.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-binding-arrows, ecl-binding-arrows, sbcl-binding-arrows): New variables.
2021-06-21gnu: Add forgotten ecl-stmx and cl-stmx definitions.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-ecl-stmx, ecl-ecl-stmx): New variables.
2021-06-21gnu: Add tlf.Jack Hill
* gnu/packages/patches/tlf-support-hamlib-4.2+.patch: New file. * gnu/local.mk: Add it. * gnu/packages/radio.scm (tlf): New variable. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-06-21gnu: emacs-marginalia: Update to 0.7.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-marginalia): Update to 0.7.
2021-06-21gnu: emacs-vertico: Update to 0.12.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-vertico): Update to 0.12.
2021-06-21gnu: emacs-corfu: Update to 0.9.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-corfu): Update to 0.9.
2021-06-21gnu: font-terminus: Build Open Type Bitmap.Boris A. Dekshteyn
* gnu/packages/fonts.scm (font-terminus)[outputs]: Add otb. [arguments]: Add 'build-otb, 'install-otb phases. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-06-21gnu: kirc: Update to 0.2.7.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (kirc): Update to 0.2.7.
2021-06-21gnu: asio: Update to 1.18.2.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (asio): Update to 1.18.2.
2021-06-21gnu: whois: Update to 5.5.10.Tobias Geerinckx-Rice
* gnu/packages/networking.scm (whois): Update to 5.5.10.
2021-06-21gnu: ocaml-merlin: Inherit from ‘ocaml-dot-merlin-reader’.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-merlin): Inherit from ‘ocaml-dot-merlin-reader’, thus also updating it to 4.2-411. [version, source, build-system, home-page]: Remove. [arguments]<#:phases>: Use custom test phase. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-21gnu: ocaml-dot-merlin-reader: Update to 4.2-411.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-dot-merlin-reader): Update to 4.2-411. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-20gnu: corsix-th: Update to 0.65.Tobias Geerinckx-Rice
* gnu/packages/games.scm (corsix-th): Update to 0.65.
2021-06-20gnu: tcpdump: Update to 4.99.1.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (tcpdump): Update to 4.99.1.
2021-06-20gnu: rsnapshot: Update to 1.4.4.Tobias Geerinckx-Rice
* gnu/packages/backup.scm (rsnapshot): Update to 1.4.4.
2021-06-20gnu: knot: Update to 3.0.7.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (knot): Update to 3.0.7.
2021-06-20services: openssh: Replace 'without-password' by 'prohibit-password'.Brice Waegeneire
For some time, OpenSSH's option 'PermitRootLogin' has deprecated the ambiguous argument 'without-password' with 'prohibit-password'. * doc/guix.texi (Network Services): Replace 'without-password by 'prohibit-password. * gnu/machine/digital-ocean.scm (guix-infect): Change system configuration to use 'prohibit-password. * gnu/services/ssh.scm (openssh-configuration): Change comment to use 'prohibit-password. (openssh-config-file): Add support for 'prohibit-password to 'permit-root-login'. Warn about deprecated 'without-password usage. * gnu/tests/ganeti.scm (%ganeti-os): Replace 'without-password by 'prohibit-password. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-06-20gnu: ocaml-ppxlib: Update to 0.22.1.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.22.1. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-20gnu: why3: Update to 1.3.3.Julien Lepiller
* gnu/packages/maths.scm (why3): Update to 1.3.3. [arguments]: Adjust for newer ocaml-num.
2021-06-20gnu: ocaml-menhir: Update to 20210419.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-menhir): Update to 20210419. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-20gnu: openvpn: Update to 2.5.3.Solene Rapenne
* gnu/packages/vpn.scm (openvpn): Update to 2.5.3. Signed-off-by: Brice Waegeneire <brice@waegenei.re>
2021-06-20gnu: tectonic: Update to 0.7.0.Nicolas Goaziou
* gnu/packages/rust-apps.scm (tectonic): Update to 0.7.0.
2021-06-20gnu: Add ocaml-mparser-pcre.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-mparser-pcre): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-06-20gnu: Add ocaml-mparser-re.Xinglu Chen
* gnu/packages/ocaml.scm (ocaml-mparser-re): New variable. Signed-off-by: Julien Lepiller <julien@lepiller.eu>
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