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2023-02-25gnu: Remove jrnl.Andreas Enge
The last release of the package dates from 2019. It depends on the cryptography library python-pycrypto, which has had its last release in 2013 and "is unmaintained, obsolete, and contains security vulnerabilities" according to its homepage. * gnu/packages/jrnl.scm: Remove file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister file.
2023-02-23gnu: python-parso: Add patch for python@3.10.Andreas Enge
* gnu/packages/python-xyz.scm (python-parso)[origin]: Add patch. * gnu/packages/patches/python-parso-unit-tests-in-3.10.patch: New file. * gnu/local.mk (dist_patch_DATA): Register the patch.
2023-02-22gnu: ocaml-4.07: Fix signal handling with newer glibc.Julien Lepiller
* gnu/packages/patches/ocaml-4.07-dynamically-allocate-signal-stack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ocaml.scm (ocaml-4.07-boot): Use it.
2023-02-19gnu: camlboot: Fix signal handling with newer glibc.Julien Lepiller
* gnu/packages/patches/camlboot-dynamically-allocate-stack-signal.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ocaml.scm (camlboot): Use it.
2023-02-19gnu: ocaml-4.09: Fix signal handling with newer glibc.Julien Lepiller
* gnu/packages/patches/ocaml-4.09-dynamically-allocate-signal-stack.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ocaml.scm (ocaml-4.09): Use it.
2023-02-16gnu: make-openbios-package: Update to 1.1-1.af97fd7.Efraim Flashner
* gnu/packages/firmware.scm (make-openbios-package): Update to 1.1-1.af97fd7. [source]: Remove patch. [native-inputs]: Build with gcc-10. Add fcode-utils. * gnu/packages/patches/openbios-gcc-warnings.patch: Remove file. * ngu/local.mk (dist_patch_DATA): Remove it.
2023-01-30gnu: guile-3.0: Update to 3.0.9.Efraim Flashner
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.9. [source]: Remove patch. [arguments]: Only apply 'adjust-bootstrap-flags on powerpc-linux once. (guile-3.0-latest): Point to guile-3.0. * gnu/packages/patches/guile-cross-compilation.patch: Remove file (again). * gnu/local.mk (dist_patch_DATA): Remove it.
2023-01-30Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
Conflicts: doc/guix.texi gnu/local.mk gnu/packages/admin.scm gnu/packages/base.scm gnu/packages/chromium.scm gnu/packages/compression.scm gnu/packages/databases.scm gnu/packages/diffoscope.scm gnu/packages/freedesktop.scm gnu/packages/gnome.scm gnu/packages/gnupg.scm gnu/packages/guile.scm gnu/packages/inkscape.scm gnu/packages/llvm.scm gnu/packages/openldap.scm gnu/packages/pciutils.scm gnu/packages/ruby.scm gnu/packages/samba.scm gnu/packages/sqlite.scm gnu/packages/statistics.scm gnu/packages/syndication.scm gnu/packages/tex.scm gnu/packages/tls.scm gnu/packages/version-control.scm gnu/packages/xml.scm guix/build-system/copy.scm guix/scripts/home.scm
2023-01-29gnu: emacs-libgit: Update to 0.0.1-1.ab1a53a.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-libgit): Update to 0.0.1-1.ab1a53a. [source]<origin>: Remove unnecessary patch. [arguments]: Skip failing tests. [license]: Set to GPL2+. * gnu/packages/patches/emacs-libgit-use-system-libgit2.patch: Delete file. * gnu/local.mk: Apply file deletion.
2023-01-28gnu: Add timewarrior.Zac Berkowitz
* gnu/packages/task-management.scm (timewarrior): New variable. * gnu/packages/patches/timewarrior-time-sensitive-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register new file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-01-27gnu: rw: Update to 0.9 and apply a patch to build with igraph >= 0.10.Maxim Cournoyer
* gnu/packages/patches/rw-igraph-0.10.patch: New file. * gnu/local.mk: Register it. * gnu/packages/graph.scm (rw): Update to 0.9. Apply patch.
2023-01-26gnu: guile: Update to 3.0.9.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0-latest): Update to 3.0.9. * gnu/packages/package-management.scm (guix-for-cuirass): Remove. * gnu/packages/ci.scm (cuirass)[inputs]: Replace 'guix-for-cuirass' with 'guix'. * gnu/packages/patches/guile-continuation-stack-leak.patch, gnu/packages/patches/guile-cross-compilation.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove them.
2023-01-25gnu: diffoscope: Use newer llvm.Efraim Flashner
* gnu/packages/diffoscope.scm (diffoscope)[source]: Remove patch. [native-inputs]: Replace llvm-9 with llvm. * gnu/packages/patches/diffoscope-fix-llvm-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2023-01-22gnu: Add python-pypdf.Vagrant Cascadian
* gnu/packages/pdf.scm (python-pypdf): New variable. * gnu/packages/patches/python-pypdf-annotate-tests-appropriately.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2023-01-19gnu: Add petri-foo.Sughosha
* gnu/packages/music.scm (petri-foo): New public variable. * gnu/packages/patches/petri-foo-0.1.87-fix-recent-file-not-exist.patch * gnu/local.mk (GNU_SYSTEM_MODULES): Add the new patch file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-18gnu: qtwayland: Fix crashes from excessive number of frame callbacks.Andrew Tropin
QWaylandWindow::handleUpdate could create thousands of pending frame callbacks, causing compositor to terminate client connection. https://bugreports.qt.io/browse/QTBUG-81504 * gnu/packages/patches/qtwayland-dont-recreate-callbacks.patch: New file. * gnu/packages/patches/qtwayland-cleanup-callbacks.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtwayland)[source](patches): Add patches.
2023-01-17gnu: Add bees.Hilton Chain
* gnu/packages/patches/bees-beesd-honor-destdir-on-installation.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/file-systems.scm (bees): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-10gnu: patman: Fix incomplete get-maintainer patch.Maxim Cournoyer
The full set of patches already merged into the U-Boot is included for simplicity and avoiding mistakes like the previous one, where a conflicting hunk got dropped, causing the following error when running patman: WARNING: Unknown setting get_maintainer_script * gnu/packages/bootloaders.scm (u-boot) [source]: Replace the u-boot-patman-fix-help.patch, u-boot-patman-local-conf.patch and u-boot-patman-get-maintainer.patch with u-boot-patman-guix-integration.patch. * gnu/local.mk (dist_patch_DATA): Update patch registrations. * gnu/packages/patches/u-boot-patman-fix-help.patch: Delete file. * gnu/packages/patches/u-boot-patman-get-maintainer.patch: Likewise. * gnu/packages/patches/u-boot-patman-local-conf.patch: Likewise. * gnu/packages/patches/u-boot-patman-guix-integration.patch: New file. Reported-by: Jelle Licht <jlicht@fsfe.org>
2023-01-09gnu: python-afdko: Fix failing tests.Marius Bakke
* gnu/packages/patches/python-afdko-suppress-copyright-test.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/fontutils.scm (python-afdko)[source](patches): New field.
2023-01-09gnu: Move Java bootstrap packages to separate module.Ricardo Wurmus
* gnu/packages/java.scm (ant/java8): Do not inherit from ant-bootstrap. (ant)[arguments]: Replace to avoid rebuilding. (jikes, classpath-bootstrap, jamvm-1-bootstrap, ant-bootstrap, ecj-bootstrap, ecj-javac-wrapper, classpath-0.99, classpath-jamvm-wrappers, classpath-devel, jamvm, ecj-javac-wrapper-final, ecj4-bootstrap, ecj4-javac-wrapper, jamvm-with-ecj4): Move these packages from here... * gnu/packages/java-bootstrap.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new file.
2023-01-08gnu: Move Java XML packages to new module.Ricardo Wurmus
* gnu/packages/xml.scm (java-simple-xml, java-jaxp, java-apache-xml-commons-resolver, java-jaxen, java-xom, java-xsdlib, java-xpp3, java-xmlpull2, java-xmlpull-api-v1, java-dom4j, java-kxml2, java-stax, java-jettison, java-jdom2, java-xstream, java-mxparser): Move these variables from here... * gnu/packages/java-xml.scm: ...to this new file. * gnu/local.mk (GNU_SYSTEM_MODULES): Register new file. * gnu/packages/axoloti.scm, gnu/packages/batik.scm, gnu/packages/bioinformatics.scm, gnu/packages/groovy.scm, gnu/packages/java.scm, gnu/packages/maven.scm: Adjust module imports.
2023-01-08gnu: ruby-sanitize: Update to 6.0.0.Maxim Cournoyer
* gnu/packages/ruby.scm (ruby-sanitize): Update to 6.0.0. Re-indent inputs. [source]: Delete patch. * gnu/packages/patches/ruby-sanitize-system-libxml.patch: Delete patch. * gnu/local.mk (dist_patch_DATA): De-register it.
2023-01-06gnu: guile-email: Update to 0.3.0.Arun Isaac
* gnu/packages/guile-xyz.scm (guile-email): Update to 0.3.0. [native-inputs]: Remove pkg-config and lzip. Add texinfo. [arguments]: Remove GUILE_AUTO_COMPILE=0 make-flag. Add prefix make-flag. Delete configure phase. (guile2.2-email)[arguments]: Add guile_effective_version=2.2 make-flag. * gnu/packages/patches/guile-email-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Unregister it.
2023-01-05gnu: Add zls.Maya Tomasek
* gnu/packages/zig-xyz.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-01-04gnu: Add sugar-toolkit-gtk3.Ricardo Wurmus
* gnu/packages/sugar.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2023-01-04gnu: Correct file prefix.Ricardo Wurmus
* gnu/local.mk (dist_patch_DATA): Use "%D%" instead of "gnu" as prefix for tootle patch files.
2023-01-04gnu: Add wdl.Sughosha
Alined and improved the definition, as per the chat in IRC. * gnu/packages/cpp.scm (wdl): New public variable. * gnu/packages/patches/wdl-link-libs-and-fix-jnetlib.patch: New file. * gnu/local.mk: Register the patch file.
2022-12-31gnu: kodi: Update to 19.5.Ricardo Wurmus
* gnu/packages/kodi.scm (kodi): Update to 19.5. [source]: Remove obsolete patches; delete bundled jars. [arguments]: Update configure flags; adjust build phase 'patch-stuff to use Groovy from Guix; adjust file names; remove obsolete substitutions; disable TestCPUInfo.GetCPUFrequency test; remove trailing #T from build phases. [native-inputs]: Drop input labels; add googletest, groovy, openjdk9, and java-commons-lang; remove icedtea. [inputs]: Add spdlog-for-kodi; replace fmt-7 with fmt-6 (for spdlog). (kodi/wayland)[arguments]: Adjust configure flags. [inputs]: Use modify-inputs. * gnu/local.mk (dist_patch_DATA): Remove obsolete patches. * gnu/packages/patches/kodi-set-libcurl-ssl-parameters.patch: Adjust. * gnu/packages/patches/kodi-increase-test-timeout.patch: Remove file. * gnu/packages/patches/kodi-skip-test-449.patch: Remove file.
2022-12-28gnu: Add patman.Maxim Cournoyer
* gnu/packages/bootloaders.scm (patman): New variable. * gnu/packages/patches/u-boot-patman-fix-help.patch: New patch. * gnu/packages/patches/u-boot-patman-get-maintainer.patch: Likewise. * gnu/packages/patches/u-boot-patman-local-conf.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register them.
2022-12-28gnu: Add u-boot-documentation.Maxim Cournoyer
* gnu/packages/patches/u-boot-infodocs-target.patch: New patch. * gnu/local.mk: (dist_patch_DATA): Register it. * gnu/packages/bootloaders.scm (u-boot): Apply it. (u-boot-documentation): New variable.
2022-12-27gnu: jami: Update to 20221220.0956.79e1207.Maxim Cournoyer
* gnu/packages/jami.scm (%jami-version): Update to 20221220.0956.79e1207. (%jami-sources): Remove all but the 'jami-disable-integration-tests.patch' and 'jami-libjami-headers-search.patch' patches. * gnu/packages/patches/jami-fix-qml-imports.patch: Delete file. * gnu/packages/patches/jami-fix-unit-tests-build.patch: Likewise. * gnu/packages/patches/jami-no-webengine.patch: Likewise. * gnu/packages/patches/jami-sip-contacts.patch: Likewise. * gnu/packages/patches/jami-sip-unregister.patch: Likewise. * gnu/packages/patches/jami-sipaccount-segfault.patch: Likewise. * gnu/packages/patches/jami-xcb-link.patch: Likewise. * gnu/local.mk (dist_patch_DATA): De-register them.
2022-12-25gnu: Add openbios-qemu-ppc.Marius Bakke
* gnu/packages/firmware.scm (make-openbios-package): New procedure. (openbios-qemu-ppc): New variable. * gnu/packages/patches/openbios-gcc-warnings.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-12-23gnu: ceph: Update to 17.2.5.Ricardo Wurmus
* gnu/packages/storage.scm (ceph): Update to 17.2.5. [source]: Remove obsolete patches; remove bundled sources for arrow. [arguments]: Disable parallel build; use system arrow. [inputs]: Drop input labels; add apache-thrift, apache-arrow-for-ceph, and utf8proc. * gnu/packages/patches/ceph-boost-compat.patch: Delete file. * gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove them.
2022-12-21gnu: julia-tracker: Update to 0.2.22.Efraim Flashner
* gnu/packages/julia-xyz.scm (julia-tracker): Update to 0.2.22. [source]: Remove patch. [propagated-inputs]: Add julia-functors, julia-logexpfunctions, julia-optimisers. * gnu/packages/patches/julia-tracker-16-compat.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-12-20gnu: libgeotiff: Apply patch for building against proj 9.1.1.Felix Gruber
* gnu/packages/patches/libgeotiff-fix-tests-with-proj-9.1.1.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/geo.scm (libgeotiff): Apply it. Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-12-11gnu: flashrom: Fix build on AArch64.Simon South
* gnu/packages/patches/flashrom-fix-building-on-aarch64.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/flashing-tools.scm (flashrom)[source]: Apply it. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-12-15gnu: Add python-telingo.Liliana Marie Prikler
* gnu/packages/patches/python-telingo-fix-comparison.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/maths.scm (python-telingo): New variable.
2022-12-14gnu: Add directory-server-service-type.Ricardo Wurmus
* gnu/services/ldap.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * doc/guix.texi (LDAP Services): Document it.
2022-12-13gnu: python-flask-restful: Update to 0.3.9.Ricardo Wurmus
* gnu/packages/python-web.scm (python-flask-restful): Update to 0.3.9. [source]: Remove patch. [build-system]: Use pyproject-build-system. [arguments]: Disable "test_redirect" test; remove 'fix-imports phase. [native-inputs]: Replace python-nose with python-pytest. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/python-flask-restful-werkzeug-compat.patch: Remove file.
2022-12-13gnu: python-apsw: Update to 3.40.0.0.Ricardo Wurmus
* gnu/packages/databases.scm (python-apsw): Update to 3.40.0.0. [source]: Remove obsolete patch. [build-system]: Use pyproject-build-system. [native-inputs]: Add python-cython. [arguments]: Move build-extensions phase before build phase. * gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/python-apsw-3.39.2.1-test-fix.patch: Remove file.
2022-12-11gnu: python-seaborn: Update to 0.12.0.Arun Isaac
* gnu/packages/python-xyz.scm (python-seaborn): Update to 0.12.0. [source]: Remove patches. [arguments]: Import (ice-9 match) module. Remove patch-more-tests and start-xserver phases. Replace build and install phases. Fix pytest command in check phase. [native-inputs]: Add python-flit-core and python-pypa-build. Remove xorg-server-for-tests. * gnu/packages/patches/python-seaborn-2690.patch, gnu/packages/patches/python-seaborn-kde-test.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Unregister them.
2022-12-08gnu: julia: Update to 1.8.3.Efraim Flashner
* gnu/packages/julia.scm (julia): Update to 1.8.3. [source]: Remove one patch. [arguments]: Adjust 'prepare-deps phase to changes in inputs. Remove custom 'use-system-libwhich, 'change-number-of-precompiled-statements, 'symlink-libraries phases. In 'fix-include-and-link-paths phase remove substitution for utf8proc linking and adjust libuv linking. Fix reference to shell in 'replace-default-shell phase. Adjust the 'shared-objects-path phase to changes in the source. Change the 'enable-parallel-tests phase for upstream changes. Adjust the 'adjust-test-suite phase to be more robust. Change the 'disable-broken-tests phase to help the test suite pass. Rename 'symlink-llvm-utf8proc phase to 'symlink-missing-libraries and add two more. Adjust make-flags for changes in shared system libraries. Reorder make-flags to changes in the source. Except for aarch64, use the defaults for choosing to use 64-bit blas. [inputs]: Add libblastrampoline. Replace libgit-1.1 with libgit-1.3, utf8proc-2.7.1 with utf8proc-2.8.0. [native-inputs]: Replace python-2 with python. (libunwind-julia): Update to 1.5.0. [source]: Update patches. * gnu/packages/libevent.scm (libuv-julia): Update to 2.0.0-4.e6f0e49. [arguments]: Also build static library, build position-independent-code. * gnu/packages/llvm.scm (llvm-julia): Update to llvm-13, following upstream's build instructions. * gnu/packages/maths.scm (openlibm): Update to 0.8.1. * gnu/packages/textutils.scm (utf8proc-2.7.1): Update and rename to utf8proc-2.8.0. [native-inputs]: Update unicode to 14.0.0. * gnu/packages/tls.scm (mbedtls-apache): Update to 2.28.0. [source]: Remove snippet. [arguments]: Remove trailing #t from phases. * gnu/packages/patches/julia-allow-parallel-build.patch, (julia-patch): Update version string to 1.8.2. gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: Remove files. * gnu/local.mk (dist_patch_DATA): Remove them. Co-authored-by: Akira Kyle <akira@akirakyle.com>
2022-12-04tests: Add gdm tests.Bruno Victal
* gnu/tests/gdm.scm: New file. * gnu/local.mk: Register it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-04gnu: Add libapparmor.Hilton Chain
* gnu/packages/apparmor.scm: New file. (libapparmor): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Add the file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-12-04gnu: jami: Apply a patch to fix a crash when using SIP.Maxim Cournoyer
* gnu/packages/patches/jami-sipaccount-segfault.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it.
2022-12-01gnu: sssd: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/sssd.scm (sssd): Update to 2.8.1. [source]: Remove obsolete patch. * gnu/packages/patches/sssd-optional-systemd.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2022-11-30gnu: Remove unused patch.Guillaume Le Vaillant
This a followup to 9b714ec75ee74d9f5464a8a08144f27eae817cd9. * gnu/packages/patches/sbcl-fix-build-on-arm64-with-clisp-as-host.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2022-11-29gnu: jami: Apply a patch to fix receiving of text messages over SIP.Maxim Cournoyer
* gnu/packages/patches/jami-sip-contacts.patch: New patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/jami.scm (%jami-sources): Apply it.
2022-11-29gnu: rust-1.64: Fix building on riscv64-linux.Efraim Flashner
* gnu/packages/rust.scm (rust-1.64)[source]: Add patch and patch-flags. (rust-1.65)[source]: Remove patch and reset patch-flags. * gnu/packages/patches/rust-1.64-fix-riscv64-bootstrap.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2022-11-24gnu: linux-libre: Enable building info doc.Maxim Cournoyer
* gnu/packages/patches/linux-libre-infodocs-target.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/linux.scm (linux-libre-6.0-source, linux-libre-5.15-source) (linux-libre-5.10-source): Apply above patch. (doc-supported?): New procedure. (make-linux-libre) [DOC-SUPPORTED?]: Add new patch in the default patches used. Add a BUILD-DOC? argument. (make-linux-libre*): Add a BUILD-DOC? argument. Validate BUILD-DOC? for supported VERSION. [arguments]: Conditionally add the build-doc and install-doc phases. [native-inputs]: Conditionally add fontconfig, graphviz, python-wrapper, python-sphinx, texinfo and which.
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