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2018-02-09gnu: python-pandas: Update to 0.22.0.Marius Bakke
* gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/patches/python-pandas-skip-failing-tests.patch: Delete file. * gnu/packages/python.scm (python-pandas): Update to 0.22.0. [source](patches): Remove. [native-inputs]: Add PYTHON-PYTEST and PYTHON-LXML. [arguments]: Replace CHECK-PHASE with custom pytest invocation. [home-page]: Use HTTPS.
2018-02-09gnu: icecat: Use system harfbuzz and graphite2 libraries.Mark H Weaver
* gnu/packages/patches/icecat-use-system-harfbuzz.patch, gnu/packages/patches/icecat-use-system-graphite2.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/gnuzilla.scm (icecat)[source]: Add patches. Delete "gfx/harfbuzz" and "gfx/graphite2" in the snippet. [inputs]: Add harfbuzz and graphite2. [arguments]: Add "--with-system-harfbuzz" and "--with-system-graphite2" to configure-flags.
2018-02-09Merge branch 'master' into core-updatesMark H Weaver
2018-02-08gnu: mpv: Fix CVE-2018-6360.Alex Vong
* gnu/packages/patches/mpv-CVE-2018-6360-1.patch, gnu/packages/patches/mpv-CVE-2018-6360-2.patch, gnu/packages/patches/mpv-CVE-2018-6360-3.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/video.scm (mpv)[source]: Use them. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-02-08gnu: libtirpc: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.2. [patches]: Remove patch for fixed CVE. * gnu/packages/patches/libtirpc-CVE-2017-8779.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-08gnu: luajit: Update to 2.1.0-beta3.Tobias Geerinckx-Rice
* gnu/packages/lua.scm (luajit): Update to 2.1.0-beta3. [source]: Remove symlinks patch. * gnu/packages/patches/luajit-symlinks.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-02-07gnu: mupdf: Fix CVE-2017-17858.Leo Famulari
* gnu/packages/patches/mupdf-CVE-2017-17858.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (mupdf)[source]: Use it.
2018-02-06gnu: hwloc: Add 2.0.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): New variable. * gnu/packages/patches/hwloc-tests-without-sysfs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-02-06gnu: gpsbabel: Update to 1.5.4 and fix build.Mathieu Othacehe
* gnu/packages/patches/gpsbabel-minizip.patch: New file. * gnu/packages/patches/gpsbabel-qstring.patch: New file. * gnu/local.mk (dist_patch_DATA): Update accordingly. * gnu/packages/gps.scm (gpsbabel): Update to 1.5.4, [source]: add two previous patches to fix build, [snippet]: remove "gpsbabel" directory excursion, [arguments]: ditto.
2018-02-05gnu: p7zip: Fix CVE-2017-17969.Leo Famulari
* gnu/packages/patches/p7zip-CVE-2017-17969.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/compression.scm (p7zip)[source]: Use it.
2018-02-01Merge branch 'master' into core-updatesMarius Bakke
2018-01-31gnu: transmission: Update to 2.93.Leo Famulari
* gnu/packages/bittorrent.scm (transmission): Update to 2.93. [source]: Update URL and remove patch. * gnu/packages/patches/transmission-fix-dns-rebinding-vuln.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-31gnu: python-axolotl: Update to 0.1.39 and fix build.Adam Van Ymeren
python-axolotl has been failing since March, https://hydra.gnu.org/job/gnu/master/python-axolotl-0.1.35.x86_64-linux This also fixes the OMEMO and OTR plugins for Gajim work. * gnu/packages/patches/python-axolotl-AES-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python-crypto.scm (python-axolotl): Upgrade to 0.1.39. [source]: Use the patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-30gnu: Add Enki.Ludovic Courtès
* gnu/packages/robotics.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-01-30gnu: rsync: Update to 3.1.3.Tobias Geerinckx-Rice
* gnu/packages/rsync.scm (rsync): Update to 3.1.3. [source]: Remove patches for fixed CVEs. [properties]: Remove field. * packages/patches/rsync-CVE-2017-16548.patch: Delete file. * packages/patches/rsync-CVE-2017-17433.patch: Delete file. * packages/patches/rsync-CVE-2017-17433-fix-tests.patch: Delete file. * packages/patches/rsync-CVE-2017-17434-pt1.patch: Delete file. * packages/patches/rsync-CVE-2017-17434-pt2.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove them.
2018-01-26Merge branch 'master' into core-updatesMark H Weaver
2018-01-26gnu: reposurgeon: Update to 3.43.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (reposurgeon): Update to 3.43. [source]: Add a patch needed to build the package. [arguments]: Add ‘patch-inputs’ phase. [native-inputs]: Replace docbook-xml-4.1.2 with the latest docbook-xml. [inputs]: Add tzdata. * gnu/packages/patches/reposurgeon-add-missing-docbook-files.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-01-25gnu: dovecot: Fix CVE-2017-15132.Leo Famulari
* gnu/packages/patches/dovecot-CVE-2017-15132.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mail.scm (dovecot)[source]: Use it.
2018-01-25gnu: Update SELinux packages.Ricardo Wurmus
* gnu/packages/selinux.scm (libsepol): Update to 2.7, release 20170804. [source]: Fetch from git. (checkpolicy)[arguments]: Set LIBSEPOLA. (libselinux)[arguments]: Likewise; remove build phase "patch-libsepol-path". (python-sepolgen)[arguments]: Adjust directory name in "enter-dir". (python-setools): Update to 4.1.1. [source]: Fetch from git. (policycoreutils)[source]: Remove patch. [arguments]: Remove build phases "fix-glib-cflags", "fix-linkage-with-libsepol", "fix-target-paths", and "wrap-python-tools". [inputs]: Remove python-wrapper, python-sepolgen, python-setools, python-ipy, libcap-ng, pcre, dbus, dbus-glib, and glib. * gnu/packages/patches/policycoreutils-make-sepolicy-use-python3.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-25gnu: Update SELinux packages.Ricardo Wurmus
* gnu/packages/selinux.scm (libsepol): Update to 2.7, release 20170804. [source]: Fetch from git. (checkpolicy)[arguments]: Set LIBSEPOLA. (libselinux)[arguments]: Likewise; remove build phase "patch-libsepol-path". (python-sepolgen)[arguments]: Adjust directory name in "enter-dir". (python-setools): Update to 4.1.1. [source]: Fetch from git. (policycoreutils)[source]: Remove patch. [arguments]: Remove build phases "fix-glib-cflags", "fix-linkage-with-libsepol", "fix-target-paths", and "wrap-python-tools". [inputs]: Remove python-wrapper, python-sepolgen, python-setools, python-ipy, libcap-ng, pcre, dbus, dbus-glib, and glib. * gnu/packages/patches/policycoreutils-make-sepolicy-use-python3.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-24Merge branch 'master' into core-updatesMark H Weaver
2018-01-24gnu: icecat: Add more fixes from upstream mozilla-esr52.Mark H Weaver
Includes fixes for CVE-2018-5104, CVE-2018-5097, CVE-2018-5099, and the remaining 7 out of 21 changesets for CVE-2018-5089. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr52 repository. Remove the local spectre mitigation patch in favor of the (identical) changeset from upstream. * gnu/packages/patches/icecat-bug-1427870-spectre-mitigation.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-23Merge branch 'master' into core-updatesMark H Weaver
2018-01-23gnu: libsndfile: Fix CVE-2017-12562.Leo Famulari
* gnu/packages/patches/libsndfile-CVE-2017-12562.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pulseaudio.scm (libsndfile)[replacement]: New field. (libsndfile/fixed): New variable.
2018-01-23gnu: rtags: Fix the bundling issue.Fis Trivial
* gnu/packages/patches/rtags-separate-rct.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/code.scm (rtags): Dependencies no longer bundled. [source]: Use tarball release. Use the patch to link rct. Substitute corresponding headers. [native-inputs]: Add new dependencies. [inputs]: Likewise. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-23gnu: rct: Add missing headers, enable RTTI.Fis Trivial
* gnu/packages/patches/rct-add-missing-headers.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/cpp.scm (rct): Use the patch, enable RTTI. [source]: Use the patch to add missing headers from installation. [arguments]: Enable RTTI in configure-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-20gnu: clisp: Fix build with glibc 2.26.Kei Kebreau
* gnu/packages/patches/clisp-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/lisp.scm (clisp)[source]: Use it.
2018-01-20gnu: Remove references to deleted patches.Mark H Weaver
This is a followup to commit e074a655dd6497daafbd62737e3b63f3d5aa7985. * gnu/local.mk (dist_patch_DATA): Remove ninja-zero-mtime.patch and node-test-http2-server-rst-stream.patch, which no longer exist.
2018-01-19Merge branch 'master' into core-updatesMark H Weaver
2018-01-19gnu: libexif: Fix CVE-2016-6328.Leo Famulari
* gnu/packages/patches/libexif-CVE-2016-6328.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/photo.scm (libexif)[source]: Use it.
2018-01-19gnu: ninja: Update to 1.8.2.Tobias Geerinckx-Rice
* gnu/packages/ninja.scm (ninja): Update to 1.8.2. [source]: Remove upstreamed patch. [arguments]: Substitute INVOKE for SYSTEM*. Use standard indentation. * gnu/packages/patches/ninja-zero-mtime.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18gnu: webkitgtk: Update to 2.18.5.Mark H Weaver
* gnu/packages/webkit.scm (webkitgtk): Update to 2.18.5. [source]: Remove patch. * gnu/packages/patches/webkitgtk-mitigate-spectre.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18gnu: slurm: Update to 17.11.2.Tobias Geerinckx-Rice
* gnu/packages/parallel.scm (slurm): Update to 17.11.2. [source]: Replace patch with less fragile SUBSTITUTE* in a snippet. [arguments]: Rename ‘autogen’ phase to ‘autoconf’. Use INVOKE. * gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18gnu: Add sl.Tobias Geerinckx-Rice
* gnu/packages/toys.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
2018-01-18gnu: lxterminal: Update to 0.3.1.Tobias Geerinckx-Rice
* gnu/packages/lxde.scm (lxterminal): Update to 0.3.1. [source]: Remove patch for fixed CVE. [arguments]: No longer skip test suite which appear to be fixed. * gnu/packages/patches/lxterminal-CVE-2016-10369.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-01-18gnu: clang-runtime: Fix build issues against glibc 2.26.Ludovic Courtès
* gnu/packages/patches/clang-runtime-asan-build-fixes.patch, gnu/packages/patches/clang-runtime-esan-build-fixes.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/llvm.scm (clang-runtime-from-llvm): Add 'patches' parameter and honor it. (clang-runtime): Pass patch list. (clang-runtime-3.9.1, clang-runtime-3.7, clang-runtime-3.6) (clang-runtime-3.5): Likewise.
2018-01-16gnu: opencascade-oce: Fix build with glibc 2.26.Leo Famulari
* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
2018-01-16gnu: libgnomeui: Fix build with Python 3.6.Leo Famulari
* gnu/packages/patches/libgnomeui-utf8.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnome.scm (libgnomeui)[source]: Use it.
2018-01-16gnu: libxml2: Fix CVE-2017-15412.Leo Famulari
* gnu/packages/patches/libxml2-CVE-2017-15412.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xml.scm (libxml2/fixed)[source]: Use it.
2018-01-15gnu: Add emacs-json-reformat.Oleg Pykhalov
* gnu/packages/patches/emacs-json-reformat-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add this. * gnu/packages/emacs.scm (emacs-json-reformat): New variable.
2018-01-13gnu: icecat: Fix compilation against glibc 2.26.Ludovic Courtès
* gnu/packages/patches/icecat-glibc-2.26.patch: New file. * gnu/packages/gnuzilla.scm (icecat)[source](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-01-13gnu: libgnome: Adjust for latest GLib.Ludovic Courtès
* gnu/packages/patches/libgnome-encoding.patch: New file. * gnu/packages/gnome.scm (libgnome)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-01-12gnu: transmission: Fix a DNS rebinding vulnerability that allows RCE.Leo Famulari
* gnu/packages/patches/transmission-fix-dns-rebinding-vuln.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/bittorrent.scm (transmission)[source]: Use it.
2018-01-12gnu: dtc: Update to 1.4.6.Tobias Geerinckx-Rice
* gnu/packages/bootloaders.scm (dtc): Update to 1.4.6. [source]: Remove both patches. * gnu/packages/patches/dtc-format-modifier.patch: Delete file. * gnu/packages/patches/dtc-32-bits-check.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove both.
2018-01-11Merge branch 'master' into core-updatesLeo Famulari
2018-01-11gnu: libvorbis: Fix CVE-2017-{14632,14633}.Leo Famulari
* gnu/packages/patches/libvorbis-CVE-2017-14632.patch, gnu/packages/patches/libvorbis-CVE-2017-14633.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/xiph.scm (libvorbis)[replacement]: New field. (libvorbis/fixed): New variable.
2018-01-11gnu: guile-bytestructures: Update to 1.0.1.amirouche
* gnu/package/guile.scm (guile-bytestructures): Update to 1.0.1. [source]: Use tarball from github instead of git. [build-system]: Use GNU-BUILD-SYSTEM. [arguments]: Remove. [navitve-inputs]: Add PKG-CONFIG. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-01-11gnu: newsbeuter: Deprecate in favour of newsboat.Tobias Geerinckx-Rice
* gnu/packages/syndication.scm (newsbeuter): Redefine using ‘deprecated-package’. * gnu/packages/patches/newsbeuter-CVE-2017-12904.patch: Delete file. * gnu/packages/patches/newsbeuter-CVE-2017-14500.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Remove both.
2018-01-10gnu: gpm: Fix building with glibc 2.26.Leo Famulari
* gnu/packages/patches/gpm-glibc-2.26.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (gpm)[source]: Use it.
2018-01-10gnu: nfs-utils: Adapt to changes in glibc 2.26.Leo Famulari
* gnu/packages/patches/nfs-utils-missing-headers.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/nfs.scm (nfs-utils)[source]: Use it.
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