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2018-12-07Merge branch 'version-0.16.0'Ludovic Courtès
2018-12-06gnu: QEMU: Fix CVE-2018-16847 and CVE-2018-16867.Leo Famulari
* gnu/packages/patches/qemu-CVE-2018-16847.patch, gnu/packages/patches/qemu-CVE-2018-16867.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/virtualization.scm (qemu)[source]: Use them.
2018-12-06gnu: elogind: Update to 239.2.Stefan Stefanović
* gnu/packages/freedesktop.scm (elogind): Update to 239.2. [source](patches): Remove elogind-glibc-2.27.patch. [source](snippet): Remove snippet. [arguments]: <#:tests?>: Enable tests. <#:configure-flags>: Adjust build paths. Disable some tests. <#:make-flags>: Remove argument. <#:phases>[patch-locale-header]: Remove phase. <#:phases>[clean-runpath]: Add phase. <#:phases>[bootstrap]: Remove phase. <#:phases>[fix-pkttyagent-path]: Add phase. <#:phases>[fix-service-file]: Remove phase. <#:phases>[add-libcap-to-search-path]: Remove phase. <#:phases>[remove-uaccess-tag]: Remove phase. <#:phases>[change-pid-file-path]: Add phase. [build-system]: Switch to meson-build-system. [native-inputs]: Sort native-inputs list. Remove gperf package version constraint. Remove: autoconf, automake, libtool, intltool. Add: docbook-xml-4.2. [inputs]: Remove: linux-libre-headers. * gnu/packages/patches/elogind-glibc-2.27.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove patch file. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-12-05gnu: quilt: Use shorter file names for patches.Ludovic Courtès
We were reaching the 99-character limit of POSIX tar. * gnu/packages/patches/quilt-compat-getopt-fix-option-with-nondigit-param.patch: Rename to... * gnu/packages/patches/quilt-getopt-nondigit-param.patch: ... this. * gnu/packages/patches/quilt-compat-getopt-fix-second-separator.patch: Rename to... * gnu/packages/patches/quilt-getopt-second-separator.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/patchutils.scm (quilt)[source](patches): Likewise.
2018-12-03gnu: Beets: Fix compatibility with Python 3.7.Leo Famulari
* gnu/packages/patches/beets-python-3.7-fix.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/music.scm (beets)[source]: Use it.
2018-12-03Merge branch 'core-updates'Ludovic Courtès
2018-12-01handbrake: Update to 1.1.2.Eric Bavier
* gnu/packages/video.scm (handbrake): Update to 1.1.2. [source]: Use direct download url. Remove upstreamed patch. Patch make fragments in snippet. [inputs]: Use latest ffmpeg. Add jansson and opus. [arguments]: Remove 'disable-contrib phase, which is now in source snippet. Move 'fix-x265-linking phase fix to #:configure-flags. [license]: Use 'gpl2' as clarified in LICENSE. * gnu/packages/patches/handbrake-pkg-config-path.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-30gnu: blender: Use newer ffmpeg.Efraim Flashner
* gnu/packages/graphics.scm (blender)[source]: Add patch for newer ffmpeg compatability. [inputs]: Replace ffmpeg-2.8 with ffmpeg. * gnu/packages/patches/blender-newer-ffmpeg.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-11-30patchutils: Update to 0.3.4.Eric Bavier
* gnu/packages/patchutils.scm (patchutils): Update to 0.3.4. [arguments]: Simplify 'patch-test-scripts' phase. * gnu/packages/patches/patchutils-xfail-gendiff-tests.patch: Rename to... * gnu/packages/patches/patchutils-test-perms.patch: ...this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-11-29Merge branch 'master' into core-updatesMarius Bakke
2018-11-29gnu: lirc: Build reproducibly.Ludovic Courtès
* gnu/packages/patches/lirc-reproducible-build.patch: New file. * gnu/packages/lirc.scm (lirc)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-29gnu: rust: Shorten patch file name.Ludovic Courtès
This file name was too long to fit in a tar archive. * gnu/packages/patches/rust-mdbook-support-reproducible-builds-by-forcing-window.search.patch: Rename to... * gnu/packages/patches/rust-reproducible-builds.patch: ... this. * gnu/packages/rust.scm (rust-1.27, rust): Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2018-11-29gnu: Add arcanist.Robin Templeton
* gnu/packages/phabricator.scm: New file. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-29gnu: Add missing patch to local.mk.Jonathan Brielmaier
This was forgotten in 082d9383d1475b772f104f1a6b363e4c80d91cf9. * gnu/local.mk (dist_patch_DATA): Add "ghc-haddock-library-unbundle.patch". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-27gnu: scribus: Fix build with recent Poppler.Ricardo Wurmus
Suggested by ngz on #guix. * gnu/packages/patches/scribus-poppler.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/scribus.scm (scribus)[source]: Add patch.
2018-11-27gnu: x265: Fix building on armhf-linux.Efraim Flashner
* gnu/packages/video.scm (x265)[patches]: Add patch. [arguments]: Add a configure-flag to disable assembly. Adjust a custom phase to recognize armv8 as 32-bit arm when masquerading as armhf-linux.
2018-11-26gnu: Add libopenshot.Eric Bavier
* gnu/packages/video.scm (libopenshot): New variable. * gnu/packages/patches/libopenshot-tests-with-system-libs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-27gnu: mono: Make build reproducible.Danny Milosavljevic
* gnu/packages/patches/mono-mdoc-timestamping.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/mono.scm (mono)[source]: Use patch. [arguments]<#:phases>[make-reproducible]: New phase. <#:phases>[set-env]: Set SOURCE_DATE_EPOCH.
2018-11-25gnu: aegisub: Fix build.Björn Höfling
* gnu/packages/patches/aegisub-boost68.patch: New file * gnu/local.mk: Add it. * gnu/packages/video.scm (aegisub)[source]: Use patch.
2018-11-25gnu: randomjungle: Do not build static binaries.Marius Bakke
* gnu/packages/patches/randomjungle-disable-static-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/machine-learning.scm (randomjungle)[source](patches): Add it. [arguments]: Add "--disable-static" to #:configure-flags.
2018-11-24Merge branch 'master' into core-updatesMarius Bakke
2018-11-24gnu: clojure: Move to new clojure.scm.Pierre Neidhardt
* gnu/local.mk (clojure): Include new clojure.scm. * gnu/packages/clojure.scm: Add clojure, clojure-algo-generic, clojure-algo-monads, clojure-core-match, clojure-instaparse, clojure-tools-macro. * gnu/packages/lisp.scm: Remove clojure, clojure-algo-generic, clojure-algo-monads, clojure-core-match, clojure-instaparse, clojure-tools-macro.
2018-11-24Merge branch 'master' into core-updatesMarius Bakke
2018-11-22gnu: Add u-boot-pinebook.Vagrant Cascadian
* gnu/packages/patches/u-boot-pinebook-a64-update-dts.patch: New file. * gnu/packages/patches/u-boot-pinebook-syscon-node.patch: New file. * gnu/packages/patches/u-boot-pinebook-mmc-calibration.patch: New file. * gnu/packages/patches/u-boot-pinebook-video-bridge.patch: New file. * gnu/packages/patches/u-boot-pinebook-r_i2c-controller.patch: New file. * gnu/packages/patches/u-boot-pinebook-dts.patch: New file. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/bootloaders.scm (u-boot-pinebook): New exported variable. * gnu/bootloader/u-boot.scm (u-boot-pinebook-bootloader): New exported variable. * gnu/system/install.scm (pinebook-installation-os): New exported variable.
2018-11-22gnu: podofo: Add patch to fix build.Ricardo Wurmus
* gnu/packages/patches/podofo-cmake-3.12.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (podofo)[source]: Add patch.
2018-11-22gnu: python-scikit-learn: Update to 0.20.1.Marius Bakke
* gnu/packages/patches/python-scikit-learn-fix-test-non-determinism.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. * gnu/packages/machine-learning.scm (python-scikit-learn): Update to 0.20.1. [source](patches): Remove. [arguments]: Skip network tests with pytest instead of deleting files. Make sure $HOME is writable. (python2-scikit-learn): Rewrite in terms of PACKAGE-WITH-PYTHON2.
2018-11-21Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2018-11-21gnu: emacs-pdf-tools: Fix build with recent Poppler.Ludovic Courtès
* gnu/packages/patches/emacs-pdf-tools-poppler.patch: New file. * gnu/packages/emacs.scm (emacs-pdf-tools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-21gnu: casync: Fix build with glibc 2.28.Ludovic Courtès
* gnu/packages/patches/casync-renameat2-declaration.patch: New file. * gnu/packages/sync.scm (casync)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-20gnu: Add pinentry-efl.Efraim Flashner
* gnu/packages/gnupg.scm (pinentry-efl): New variable. * gnu/packages/patches/pinentry-efl.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-11-20Merge branch 'master' into core-updatesMarius Bakke
2018-11-20gnu: Add missing patch to local.mk.Marius Bakke
This line was removed by accident in 0a41123f01d5d2466d6f533be3644ac8c9a2bdf9. * gnu/local.mk (dist_patch_DATA): Add "clang-3.5-libc-search-path.patch".
2018-11-18gnu: qt@5: Fix build failure on glibc 2.28.Ludovic Courtès
* gnu/packages/patches/qt-5-renameat2.patch: New file. * gnu/packages/qt.scm (qt)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-17gnu: Add ClamAV.Eric Bavier
* gnu/packages/antivirus.scm: New file. * gnu/packages/patches/clamav-system-tomsfastmath.patch, gnu/packages/patches/clamav-config-llvm-libs.patch: New files. * gnu/local.mk (GNU_SYSTEM_MODULES): Add new module. (dist_patch_DATA): Add patches. Co-authored-by: Christopher Baines <mail@cbaines.net>
2018-11-17gnu: Add TomsFastMath.Eric Bavier
* gnu/packages/multiprecision.scm (tomsfastmath): New variable. * gnu/packages/patches/tomsfastmath-constness.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-15gnu: emacs-realgud: Patch configure.ac to repair the build.Maxim Cournoyer
This fixes https://bugs.gnu.org/33196, a build problem caused by a defective Elisp snippet in a check in configure.ac. * gnu/packages/patches/emacs-realgud-fix-configure-ac.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/emacs.scm (emacs-realgud)[source]: Use it.
2018-11-14Merge branch 'master' into core-updatesMarius Bakke
2018-11-13gnu: Poppler: Fix CVE-2018-19149.Leo Famulari
* gnu/packages/patches/poppler-CVE-2018-19149.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/pdf.scm (poppler)[replacement]: New field. (poppler/fixed): New variable. (poppler-qt4, poppler-qt5): Use package/inherit.
2018-11-11gnu: python-cffi: Fix test failure on i686.Marius Bakke
* gnu/packages/patches/python-cffi-x87-stack-clean.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/libffi.scm (python-cffi)[source](patches): Add it.
2018-11-11gnu: python-paste: Update to 3.0.4.Efraim Flashner
* gnu/packages/python-web.scm (python-paste): Update to 3.0.4. [source]: Remove patch, add snippet to remove one test. [native-inputs]: Add python-pytest, python-pytest-runner. * gnu/packages/patches/python-paste-remove-website-test.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-11gnu: python-networkx2: Remove variable.Efraim Flashner
* gnu/packages/python.scm (python-networkx2): Remove variable. * gnu/packages/patches/python-networkx2-reproducible-build.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-10gnu: icecat: Update to 60.3.0-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 60.3.0-gnu1. [source]: Switch back to the normal source URI. Remove patches that are no longer applicable. * gnu/packages/patches/icecat-CVE-2018-12383.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-11-09Merge branch 'master' into core-updatesMarius Bakke
2018-11-09gnu: wxmaxima: Update to 18.10.1.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1. [source]: Update URL and remove patch. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-07gnu: hplip: Remove bundled non-free blobs.Efraim Flashner
This fixes <https://bugs.gnu.org/32184>. * gnu/packages/cups.scm (hplip)[source]: Add patch. Update snippet to remove non-free code and binary blobs. * gnu/packages/patches/hplip-remove-imageprocessor.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2018-11-07Merge branch 'master' into core-updatesMarius Bakke
2018-11-07gnu: ceph: Update to 13.2.2.Marius Bakke
* gnu/packages/patches/ceph-skip-unittest_blockdev.patch: Adjust for 13.2.2. * gnu/packages/patches/ceph-rocksdb-compat.patch: Delete file. * gnu/packages/patches/ceph-detect-rocksdb.patch, gnu/packages/patches/ceph-volume-respect-PATH.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/storage.scm (ceph): Update to 13.2.2. [source]: Don't remove src/dpdk, which has been moved to src/spdk/dpdk and is purged elsewhere. Drop bundled rapidjson. Adjust patch list. [arguments]: Add "-DWITH_MGR_DASHBOARD_FRONTEND=OFF" and "-DWITH_SPDK=OFF" to #:configure-flags. Drop obsolete "-DWITH_EMBEDDED". Add workaround for <https://bugs.gnu.org/30756>. Remove obsolete test substitution. Rework 'wrap-python-script' to be less verbose and wrap more scripts. [native-inputs]: Add GCC-7. [inputs]: Add OATH-TOOLKIT, RAPIDJSON and PYTHON2-SIX.
2018-11-07gnu: gemma: Update to 0.98.Ricardo Wurmus
* gnu/local.mk (dist_patch_DATA): Remove patch. * gnu/packages/patches/gemma-intel-compat.patch: Remove file. * gnu/packages/bioinformatics.scm (gemma): Update to 0.98. [source]: Remove patch. [inputs]: Add eigen, gfortran:lib, and openblas. [arguments]: Add phase "find-eigen".
2018-11-06gnu: libgit2: Work around test failures on 32-bit platforms.Ludovic Courtès
* gnu/packages/patches/libgit2-oom-test.patch: New file. * gnu/packages/version-control.scm (libgit2)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2018-11-06gnu: jq: Update to 1.6.Tobias Geerinckx-Rice
* gnu/packages/web.scm (jq): Update to 1.6. [source]: Remove upstreamed patch. * gnu/packages/patches/jq-CVE-2015-8863.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
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