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2020-08-06gnu: json-c: Fix CVE-2020-12762.Efraim Flashner
* gnu/packages/web.scm (json-c)[replacement]: New field. (json-c-0.13, json-c-0.12)[source]: Add patch. (json-c/fixed): New variable. * gnu/packages/patches/json-c-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.13-CVE-2020-12762.patch, gnu/packages/patches/json-c--0.12-CVE-2020-12762.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2020-08-03gnu: pjproject: Fix problem in pkg-config file.Maxim Cournoyer
* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Add patch. * gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise. * gnu/local.mk (dist_patch_DATA): Register the new patches. * gnu/packages/telephony.scm (pjproject): Use them. * gnu/packages/jami.scm (pjproject-jami): Remove a patch from pjproject-jami that is already applied against pjproject.
2020-08-03gnu: emacs: Ignore empty XIM styles.Leo Prikler
As of libx11 version 1.6.10, xim may be NULL, which causes a segmentation fault in the execution of ARRAYELTS. As a cautionary measure, we short-circuit this logic. * gnu/packages/patches/emacs-ignore-empty-xim-styles.patch: New file. * gnu/packages/emacs.scm (emacs emacs-next)[patches]: Use it. * gnu/local.mk: Register it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-03gnu: Add python-onnx.Vinicius Monego
* gnu/packages/machine-learning.scm (python-onnx): New variable. * gnu/packages/patches/python-onnx-use-system-googletest.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-08-01gnu: Add Remake.Eric Bavier
* gnu/packages/debug.scm (remake): New variable. * gnu/packages/patches/remake-impure-dirs.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-08-01gnu: xorg-server: Fix CVE-2020-14347 via graft.Mark H Weaver
* gnu/packages/patches/xorg-server-CVE-2020-14347.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/xorg.scm (xorg-server/fixed): New variable. (xorg-server)[replacement]: New field. (xorg-server-wayland): Use package/inherit.
2020-07-31gnu: Add blender@2.79b.Mark H Weaver
Restore blender@2.79b, the last version that does not require OpenGL 3, and therefore the last version to work on many older computers. Note that this commit relies on blender-2.79-newer-ffmpeg.patch and blender-2.79-python-3.7-fix.patch, which were left in the tree when blender@2.79b was previously removed in commit 1f14453eedfede4626a78321c66a009c9997bee4. * gnu/packages/patches/blender-2.79-gcc8.patch, gnu/packages/patches/blender-2.79-gcc9.patch, gnu/packages/patches/blender-2.79-oiio2.patch, gnu/packages/patches/blender-2.79-python-3.8-fix.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/graphics.scm (blender-2.79): New variable.
2020-07-31gnu: Add bpftrace.John Soo
* gnu/packages/linux.scm (bpftrace): New variable. * gnu/packages/patches/bpftrace-disable-bfd-disasm.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-07-30gnu: python-slugify: Update to 4.0.1.Tanguy Le Carrour
* gnu/packages/patches/python-slugify-depend-on-unidecode.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-slugify): Update to 4.0.1. [source] Drop patch. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-30gnu: Add nfs4-acl-tools.Lars-Dominik Braun
* gnu/packages/nfs.scm (nfs4-acl-tools): New variable. * gnu/packages/patches/nfs4-acl-tools-0.3.7-fixpaths.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-29gnu: sphinxbase: Fix building.Efraim Flashner
* gnu/packages/speech.scm (sphinxbase)[source]: Add patch. * gnu/packages/patches/sphinxbase-fix-doxygen.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-07-29gnu: Add rnp.Justus Winter
* gnu/packages/openpgp.scm (rnp): New variable. * gnu/packages/patches/rnp-add-version.cmake.patch: New file. * gnu/packages/patches/rnp-disable-ruby-rnp-tests.patch: New file. * gnu/packages/patches/rnp-unbundle-googletest.patch: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-29gnu: libextractor: Update to 1.10.Michael Rohleder
* gnu/packages/gnunet.scm (libextractor): Update to 1.10. [arguments]: Add 'fix-exiv2-tests' phase. [inputs]: Add GIFLIB, remove TIDY-HTML. * gnu/packages/patches/libextractor-exiv2.patch: Remove. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-27gnu: plotutils: Fix build on non-x86_64 architectures.Maxim Cournoyer
* gnu/packages/patches/plotutils-spline-test.patch: Add patch. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/plotutils.scm (plotutils)[patches]: Apply it.
2020-07-27gnu: python-jedi: Update to 0.17.2.Tobias Geerinckx-Rice
* gnu/packages/python-xyz.scm (python-jedi): Update to 0.17.2. [source, arguments]: Remove upstreamed patching. * gnu/packages/patches/python-jedi-sort-project-test.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-26gnu: glibc: Remove old versions.Marius Bakke
* gnu/packages/patches/glibc-CVE-2015-5180.patch, gnu/packages/patches/glibc-CVE-2015-7547.patch, gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt1.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt2.patch, gnu/packages/patches/glibc-CVE-2017-1000366-pt3.patch, gnu/packages/patches/glibc-o-largefile.patch, gnu/packages/patches/glibc-vectorized-strcspn-guards.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (glibc-2.26, glibc-2.25, glibc-2.24, glibc-2.23, glibc-2.22): Remove variables.
2020-07-24gnu: luminance-hdr: Update to 2.6.0.Marius Bakke
* gnu/packages/patches/luminance-hdr-qt-printer.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/image-viewers.scm (luminance-hdr): Update to 2.6.0. [inputs]: Add QTSVG and EIGEN. [arguments]: Add #:tests? #f.
2020-07-24gnu: Add libtmcg.Justus Winter
* gnu/packages/openpgp.scm: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/qt.scm (qtbase-for-krita): New variable. * gnu/packages/kde.scm (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23Revert "gnu: Fix Krita."Leo Famulari
This reverts commit 5f63905096e456097fca206f56ce9257f72faf64. This commit caused `guix pull` to crash like this: ------ Backtrace: In ice-9/boot-9.scm: 222:29 19 (map1 _) 222:29 18 (map1 _) 222:29 17 (map1 _) 222:29 16 (map1 _) 222:17 15 (map1 (((gnu packages kde)) ((gnu packages libevent)) ((gnu packages libidn)) ((gnu packages #)) ((?)) ?)) 3297:17 14 (resolve-interface (gnu packages kde) #:select _ #:hide _ #:prefix _ #:renamer _ #:version _) In ice-9/threads.scm: 390:8 13 (_ _) In ice-9/boot-9.scm: 3223:13 12 (_) In ice-9/threads.scm: 390:8 11 (_ _) In ice-9/boot-9.scm: 3507:20 10 (_) 2806:4 9 (save-module-excursion _) 3527:26 8 (_) In unknown file: 7 (primitive-load-path "gnu/packages/kde" #<procedure 7f68d6fe5da0 at ice-9/boot-9.scm:3514:37 ()>) In ice-9/eval.scm: 626:19 6 (_ #<directory (gnu packages kde) 7f68d6175b40>) 293:34 5 (_ #<directory (gnu packages kde) 7f68d6175b40>) 173:47 4 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 159:9 3 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 191:35 2 (_ #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval.sc?>)) 223:20 1 (proc #(#<directory (gnu packages kde) 7f68d6175b40> #<promise #<procedure 7f68dc5a5d00 at ice-9/eval?>)) In unknown file: 0 (%resolve-variable (7 . qtbase) #<directory (gnu packages kde) 7f68d6175b40>) ERROR: In procedure %resolve-variable: error: qtbase: unbound variable ------
2020-07-23gnu: Fix Krita.Leo Famulari
Fixes <https://bugs.gnu.org/42476>. Reported by linka on #guix. * gnu/packages/patches/qtbase-fix-krita-deadlock.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/kde.scm (qtbase-for-krita): New variable. (krita)[inputs]: Replace qtbase with qtbase-for-krita.
2020-07-23gnu: Add mercury.Brett Gilio
* gnu/local.mk (GNU_SYSTEM_MODULES): Add mercury.scm. * gnu/packages/mercury.scm: New file.
2020-07-23gnu: linux-libre@4.14: Update to 4.14.189.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.14-version): Update to 4.14.189. (linux-libre-4.14-pristine-source): Update hash. (linux-libre-4.14-source): Remove %linux-libre-fix-atheros-9271-patch. (deblob-scripts-4.14): Update to 4.14.189. (%linux-libre-fix-atheros-9271-patch): Delete variable. * gnu/packages/patches/linux-libre-fix-atheros-9271.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-22services: nix: Fix sandbox.Oleg Pykhalov
* gnu/tests/package-management.scm: New file. * gnu/local.mk: Add this. * gnu/services/nix.scm (<nix-configuration>): New record. (nix-activation): Generate Nix config file which fixes sandbox. (nix-service-type): Add default value. (nix-shepherd-service): Allow provide Nix package. * doc/guix.texi (Miscellaneous Services)[Nix service]<nix-configuration>: Document record.
2020-07-22arb: Update to 2.18.1.Andreas Enge
* gnu/packages/patches/arb-flint-2.6.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/algebra.scm (arb): Update to 2.18.1. [source](patches): Remove.
2020-07-21gnu: Add intel-xed.B. Wilson
* gnu/packages/assembly.scm (intel-xed): New variable. * gnu/packages/patches/intel-xed-fix-nondeterminism.patch: New file. * gnu/local.mk (dist_patch_DATA): Add reference to new patch. Signed-off-by: Marius Bakke <marius@gnu.org>
2020-07-21gnu: libvnc: Update to 0.9.13.Marius Bakke
* gnu/packages/patches/libvnc-CVE-2018-20750.patch, gnu/packages/patches/libvnc-CVE-2019-15681.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/vnc.scm (libvnc): Update to 0.9.13. [source](patches): Remove. [arguments]: Add phase to patch 'cc' invocation.
2020-07-21gnu: emacs-telega: Patch to use telega-server from Guix.Brett Gilio
* gnu/packages/patches/emacs-telega-patch-server-functions.patch: New file. * gnu/local.mk (dist_patch_DATA): Reference new patch. * gnu/packages/emacs-xyz.scm (emacs-telega)[source]: Use new patch, bump revision.
2020-07-20gnu: python-aionotify: Fix test cases with Python 3.8.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (patches): Add fix. * gnu/packages/patches/python-aionotify-0.2.0-py3.8.patch: New file. * gnu/local.mk: Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-19gnu: ungoogled-chromium: Update to 84.0.4147.89-0.df199c0.Marius Bakke
* gnu/packages/patches/ungoogled-chromium-system-jsoncpp.patch, gnu/packages/patches/ungoogled-chromium-system-zlib.patch: Delete files. * gnu/packages/patches/ungoogled-chromium-system-nspr.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 84. (%ungoogled-revision): Set to df199c04ff367da59ce52a23a3f3b305dd3b00c3. (%debian-revision): Set to debian/83.0.4103.116-3. (%gentoo-revision): Set to f3f649046d31ebdbc8c4a302b2384504eff78027. (chromium-gcc-patchset, %chromium-gcc-patches): New variables. (%gentoo-patches): Remove GCC patches, which have been moved to the above repo. Add ffmpeg compatibility patch. (%debian-patches): Add zlib and jsoncpp patch; remove nspr patch. (%ungoogled-origin): Update hash. (ungoogled-chromium-snippet): Add the new GCC patches. Remove obsolete local patches, add new. (xcb-proto/python2): New variable. (ungoogled-chromium): Update to 84.0.4147.89-0..df199c0. [arguments]: Add "is_unsafe_developer_build", "max_jobs_per_link", "exclude_unwind_tables", "xcbproto_path", "perfetto_use_system_protobuf" to #:configure-flags. Remove "linux_use_bundled_binutils". Adjust vulkan header substitutions. [native-inputs]: Remove YASM. [inputs]: Change from FFMPEG-4.2 to FFMPEG. Add PROTOBUF and XCB-PROTO/PYTHON2.
2020-07-17gnu: ruby-rubocop: Update to 0.88.0.Maxim Cournoyer
* gnu/packages/patches/ruby-rubocop-break-dependency-cycle.patch: New file. * gnu/local.mk (dist_patch_DATA): Register patch. * gnu/packages/ruby.scm (ruby-rubocop): Update to 0.88.0. [origin]: Use git-fetch. Apply the newly added patch. [arguments]: Set #:test-target to "default". Remove #:tests?, enabling tests. [phases]{remove-problematic-tests, disable-bundler, set-home, make-adoc-files-writable}: New phases. Replace the 'replace-git-ls-files phase. [native-inputs]: Add ruby-bump, ruby-pry, ruby-rspec, ruby-test-queue, ruby-webmock-2 and ruby-yard. [propagated-inputs]: Remove ruby-powerpack and ruby-jaro-winkler. Add ruby-regexp-parser, ruby-rexml and ruby-rubocop-ast.
2020-07-17gnu: Add Rust 1.45.Jakub Kądziołka
* gnu/packages/rust.scm (rust-1.45): New variable. * gnu/packages/patches/rust-1.45-linker-locale.patch: New file. * gnu/local.mk (dist_patch_DATA): Add the patch to the list.
2020-07-17gnu: Add maven-enforcer-api.Julien Lepiller
* gnu/packages/maven.scm (maven-enforcer-api): New variable. * gnu/packages/patches/maven-enforcer-api-fix-old-dependencies.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2020-07-17gnu: Add apache-parent-pom-13.Julien Lepiller
* gnu/packages/maven-parent-pom.scm: New file. * gnu/local.mk: Add maven-parent-pom.scm.
2020-07-17gnu: emacs-exwm: Fix fullscreen states.Diego Nicola Barbato
* gnu/packages/patches/emacs-exwm-fix-fullscreen-states.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/emacs-xyz.scm (emacs-exwm)[source]: Use it. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-07-16services: Add ganeti.Marius Bakke
* gnu/services/ganeti.scm, gnu/tests/ganeti.scm: New files. * doc/guix.texi (Virtualization Services): Document the Ganeti services.
2020-07-16gnu: Add ganeti.Marius Bakke
* gnu/packages/virtualization.scm (system->qemu-target, ganeti): New variables. * gnu/packages/patches/ganeti-deterministic-manual.patch, gnu/packages/patches/ganeti-disable-version-symlinks.patch, gnu/packages/patches/ganeti-drbd-compat.patch, gnu/packages/patches/ganeti-haskell-pythondir.patch, gnu/packages/patches/ganeti-os-disk-size.patch, gnu/packages/patches/ganeti-preserve-PYTHONPATH.patch, gnu/packages/patches/ganeti-shepherd-master-failover.patch, gnu/packages/patches/ganeti-shepherd-support.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-07-16gnu: Add tao.Ricardo Wurmus
* gnu/packages/patches/tao-add-missing-headers.patch, gnu/packages/patches/tao-fix-parser-types.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them. * gnu/packages/audio.scm (tao): New variable.
2020-07-15gnu: Transmission: Update to 3.0.0.Leo Famulari
* gnu/packages/bittorrent.scm (transmission): Update to 3.0.0. [source]: Remove obsolete patch. * gnu/packages/patches/transmission-CVE-2018-10756.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-15gnu: python-tinycss2: Fix test failure.Marius Bakke
Fixes <https://bugs.gnu.org/42372>. Reported by Michael Rohleder <mike@rohleder.de>. * gnu/packages/patches/python-tinycss2-flake8-compat.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python-web.scm (python-tinycss2)[source](patches): New field.
2020-07-15gnu: python-shiboken-2, python-pyside-2: Update to 5.14.2.3.Marius Bakke
* gnu/packages/patches/qtbase-absolute-runpath.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/qt.scm (qtbase/next): New variable. * gnu/packages/qt.scm (python-shiboken-2): Update to 5.14.2.3. [source](uri): Adjust for tarball rename. [inputs]: Use the default CLANG-TOOLCHAIN. (python-pyside-2)[inputs]: Likewise. (python-pyside-2-tools)[inputs]: Change from QTBASE to QTBASE/NEXT.
2020-07-13gnu: xpra: Upgrade to 4.0.2.Lars-Dominik Braun
* gnu/packages/xorg.scm (xpra)[version]: Upgrade. [source]: Add patch. [inputs]: Adjust to use Python 3 dependencies. [arguments]: Use Python 3, add phases to patch hardcoded binary paths. * gnu/local.mk (dist_patch_DATA): Add patch. * gnu/packages/patches/xpra-4.0.1-systemd-run.patch: New file. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-07-13gnu: libreoffice: Update to 6.4.5.2.Efraim Flashner
* gnu/packages/libreoffice.scm (libreoffice): Update to 6.4.5.2. [source]: Remove patch. * gnu/packages/patches/libreoffice-poppler-compat.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-07-12gnu: opendht: Add patch.Jan Wielkiewicz
The 2.1.4 release of opendht contains a bug, preventing it's use with recent releases of Jami. This minor patch [1] resolves this issue, and should be possible to remove with the next release. 1: https://github.com/savoirfairelinux/opendht/commit/e2b39dd3a0742853e00f9c3e8c46c911da20bed7 * gnu/packages/patches/opendht-fix-jami.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/networking.scm (opendht)[source]: Apply the patch. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-07-11gnu: sqlite: Add locking-mode fix for the Hurd.Jan (janneke) Nieuwenhuizen
* gnu/packages/patches/sqlite-hurd.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/sqlite.scm (sqlite)[native-inputs]: Add it when building for the Hurd. [arguments]: Apply it when building for the Hurd.
2020-07-10gnu: Add ECL 16.1.3 for Sage.Jakub Kądziołka
* gnu/packages/sagemath.scm (ecl-16): New variable. * gnu/packages/patches/ecl-16-format-directive-limit.patch, gnu/packages/patches/ecl-16-ignore-stderr-write-error.patch, gnu/packages/patches/ecl-16-libffi.patch: New files. * gnu/local.mk (dist_patch_DATA): Register the patches.
2020-07-10gnu: linbox: Fix linking of dependant packages.Jakub Kądziołka
* gnu/packages/algebra.scm (linbox)[source]: Add a patch. [inputs]: Move fflas-ffpack to... [propagated-inputs]: ...here. * gnu/packages/patches/linbox-fix-pkgconfig.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2020-07-10gnu: arb: Build with flint 2.6.Jakub Kądziołka
Backport an upstream patch to fix a compatibility issue with flint 2.6. * gnu/packages/algebra.scm (arb): Add patch. * gnu/packages/patches/arb-flint-2.6.patch: New file. * gnu/local.mk (dist_patch_DATA): Register new file.
2020-07-10gnu: flint: Update to 2.6.0.Jakub Kądziołka
* gnu/packages/algebra.scm (flint): Update to 2.6.0. * gnu/packages/patches/flint-ldconfig.patch: Remove the patch as it got applied upstream. * gnu/local.mk (dist_patch_DATA): Deregister the removed file.
2020-07-10gnu: linux-libre: Fix regression with Atheros 9271.Mark H Weaver
* gnu/packages/patches/linux-libre-fix-atheros-9271.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/linux.scm (%linux-libre-fix-atheros-9271-patch): New variable. (linux-libre-4.4-source, linux-libre-4.9-source) (linux-libre-4.14-source, linux-libre-4.19-source) (linux-libre-5.4-source, linux-libre-5.7-source): Add the patch.
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