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* gnu/packages/julia-xyz.scm (julia-jlwrappers): Move to ...
* gnu/packages/julia-jll.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Register julia-jll.scm
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This is a follow-up to commit eda4bb4f16f74436b0caf1c584888c89b3c4c69b.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add gnu/services/ci.scm and
gnu/tests/ci.scm.
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* gnu/packages/patches/mosaicatcher-unbundle-htslib.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/bioinformatics.scm (mosaicatcher): New variable.
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* gnu/packages/networking.scm (lksctp-tools): Update to 1.0.19.
[source]: Remove patch.
* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/bioinformatics.scm (minimap2): Update to 2.18.
[source]: Remove patch.
* gnu/packages/patches/minimap2-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Apply file removal.
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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* gnu/packages/patches/autotrace-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/graphics.scm (autotrace)[source](patches): New field.
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* gnu/packages/patches/libblockdev-glib-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/disk.scm (libblockdev)[source](patches): New field.
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This is a followup to 4ebd4a58ce307874b18c30ffcd4852440e475ad5 which
removed the patch, but it was still necessary for some dependents.
* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx)[source](patches): New field.
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* gnu/packages/games.scm (pinball): Update to 3.1.20201218.
[source]: Tarballs no longer published on sourceforge, so use git-fetch.
[native-inputs]: New field for bootstrapping inputs.
[inputs]: Add libltdl.
[arguments]: Add custom 'bootstrap' phase.
* gnu/packages/patches/pinball-system-ltdl.patch: Adjust to latest source.
* gnu/packages/patches/pinball-const-fix.patch,
gnu/packages/patches/pinball-cstddef.patch,
gnu/packages/patches/pinball-missing-separators.patch,
gnu/packages/patches/pinball-src-deps.patch: Delete upstreamed patches.
* gnu/local.mk (dist_patch_DATA): Remove them.
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* gnu/packages/patches/libxml2-xpath0-Add-option-xpath0.patch: New file...
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xml.scm (libxml2-xpath0): New variable.
Signed-off-by: Marius Bakke <marius@gnu.org>
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* gnu/packages/patches/ucx-tcp-iface-ioctl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/fabric-management.scm (ucx): Update to 1.9.0.
[source](patches): Remove.
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* gnu/packages/xdisorg.scm (rxvt-unicode): Update to 9.26.
[source]: Remove upstreamed patch.
* gnu/packages/patches/rxvt-unicode-escape-sequences.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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This follows commit 0b1f70d1a7, which inadvertently broke the build of Guix
for i586-pc-gnu (Hurd).
* gnu/packages/patches/disarchive-cross-compilation.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/backup.scm (disarchive)[source]: Apply it.
[phases]{delete-configure}: New phase.
[native-inputs]: Add guile-3.0 and guile-gcrypt.
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This will make Mercurial be able to find third-party extensions installed with
Guix, without having to set PYTHONPATH.
* gnu/packages/patches/mercurial-hg-extension-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/version-control.scm (mercurial)[origin](patches): Apply the
patch.
[native-search-paths]: Add HGEXTENSIONPATH.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/graphviz-CVE-2020-18032.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphviz.scm (graphviz)[replacement]: New field.
(graphviz/fixed): New variable.
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* gnu/packages/cups.scm (hplip): Update to 3.21.4.
[source]: Remove fussy patch. Replace it with an short snippet
substitution and...
[arguments]: ...the new "--disable-imageProcessor-build" configure flag.
* gnu/packages/patches/hplip-remove-imageprocessor.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/compression.scm (snappy): Update to 1.1.9.
[source]: Add another patch.
[arguments]: Add new #:configure-flags and an
'unpack-third_party-subprojects phase.
[native-inputs]: Add the sources for benchmark and googletests.
* gnu/packages/patches/snappy-add-inline-for-GCC.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/syndication.scm (giara): New variable.
* gnu/packages/patches/giara-fix-login.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/patches/perl-image-exiftool-CVE-2021-22204.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/photo.scm (perl-image-exiftool)[source]: Use it.
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This introduces tla2tools.jar, which contains the TLA+ model checker
and simulator (TLC); a TLA+ REPL; a semantic analyzer (SANY); the TLATeX
typesetting system; PlusCal translator; and more. I have added five
wrapper scripts for convenience, rather than invoking `java' manually.
The wrapper scripts are not comprehensive; users who are familiar with
tla2tools.jar, or have read the book Specifying Systems, may still
invoke the commands in the traditional way.
The minimum JDK version is 11. I chose to stick with that rather than
bumping it to 14 (which is the largest version currently in Guix)
because each OpenJDK version in Guix depends on the version before it,
and so it needlessly results in many 100s of MiB of unnecessary
dependencies.
Note that this is _not_ the TLA+ Toolbox, which is the GUI commonly used
with TLA+.
* gnu/packages/java.scm (tla2tools): New variable.
* gnu/packages/patches/tla2tools-build-xml.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/racket.scm (racket)[source](patches): Remove
"racket-store-checksum-override.patch", which is no longer needed since
we stopped injecting store paths into Racket files in commit 834aa48:
see <https://issues.guix.gnu.org/47180>.
* gnu/packages/patches/racket-store-checksum-override.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/scheme.scm (racket,racket-minimal): Move to ...
* gnu/packages/racket.scm: ... this new file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/racket.scm (racket)[synopsis]: Tweak.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/busybox.scm (busybox): Update to 1.33.1.
[source]: Remove upstreamed patch.
* gnu/packages/patches/busybox-CVE-2021-28831.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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The previous workaround stopped the preboot phase from loading USB
support, which makes it impossible to use a USB keyboard to select a
generation from the boot menu without using a serial console.
* gnu/packages/patches/u-boot-rockchip-inno-usb.patch: New File.
* gnu/local.mk (dist_patch_DATA): Add patch.
* gnu/packages/bootloaders.scm (%u-boot-rockchip-inno-usb-patch): New variable.
(u-boot)[source]: Add patch.
(u-boot-rockpro64-rk3399, u-boot-pinebook-pro-rk3399): Remove obsolete phase.
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* gnu/packages/patches/emacs-geiser-guile-auto-activate.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser-guile): New variable.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
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* gnu/packages/patches/emacs-geiser-autoload-activate-implementation.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/emacs-xyz.scm (emacs-geiser): Update to 0.13.
[source]: Change upstream URL.
[build-system]: Change to emacs-build-system.
[arguments]: Adjust accordingly.
[native-inputs]: Remove emacs, autoconf, and automake.
[description]: State that other packages are needed for geiser to be useful.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
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support for Pinebook Pro.
* gnu/packages/linux.scm (linux-libre-5.11-source): Add Pinebook Pro
lcd patch.
(linux-libre-arm64-generic): Enable audio and battery modules for
Pinebook Pro.
* gnu/packages/patches/linux-libre-arm64-generic-pinebook-lcd.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add patch.
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* gnu/packages/patches/ungoogled-chromium-system-nspr.patch,
gnu/packages/patches/ungoogled-chromium-system-opus.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%preserved-third-party-files): Adjust for 90.
(debian-patch): Make REVISION optional, default to %DEBIAN-REVISION.
(%chromium-version): New variable.
(%ungoogled-revision): Set to 90.0.4430.85-1-11-g3184907.
(%debian-revision): Set to debian/90.0.4430.85-1.
(%debian-patches): Add more patches; update hashes.
(%ungoogled-origin): Update hash.
(%guix-patches): Remove obsolete patches.
(libvpx/chromium): Update to 1.9.0-147-g61edec1ef.
(ungoogled-chromium)[version]: Base on %CHROMIUM-REVISION and the last
component of %UNGOOGLED-REVISION, a 'git describe --long' style ID.
[arguments]: Add build_with_flite_lib in #:configure-flags. Add openjpeg
substitution in #:phases.
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* gnu/packages/patches/clang-12-tools-extra-directory.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/llvm.scm (llvm-12, clang-runtime-12, clang-12,
clang-toolchain-12): New variables.
(llvm-11): Inherit from LLVM-12.
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* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-ugly)[source]: Use it.
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* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-base)[source]: Use it.
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* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-plugins-bad)[source]: Use it.
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* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gstreamer.scm (gst-libav)[source]: Use it.
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* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch,
gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/gstreamer.scm (gst-plugins-good)[source]: Use them.
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* gnu/packages/gimp.scm (gimp): Update to 2.10.24.
[source]: Remove obsolete patch 'gimp-make-gegl-introspect-optional.patch'.
* gnu/packages/patches/gimp-make-gegl-introspect-optional.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/orange.scm: New file.
* gnu/packages/local.mk (GNU_SYSTEM_MODULES): Add it.
Signed-off-by: Leo Famulari <leo@famulari.name>
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Apparently, during grafting, Guix can somehow mangle compiled
Racket CS files (.zo) such that Racket will refuse to load them.
(Maybe it has something to do with compression?)
So, we stop patching Racket sources with absolute paths to store
files (i.e. for foreign libraries to dlopen).
Instead, we put them in a data file that doesn't get compiled or,
in one case, embed it in C.
Fixes https://issues.guix.gnu.org/47064
* gnu/packages/patches/racket-sh-via-rktio.patch: New file.
Adds a special case at the C level, controlled by a preprocessor macro,
to handle attempts to execute "/bin/sh".
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/scheme.scm (racket)[source](patches): Apply it.
(racket)[arguments](#:configure-flags): Add the CPP flag to enable it.
(racket)[arguments](#:modules): Use srfi-1.
(racket)[arguments](#:phases): Remove 'patch-/bin/sh and 'pre-configure.
Change 'pre-configure-minimal to just change directory.
Add 'patch-config.rktd-lib-search-dirs after 'build and before 'install
to configure Racket's "lib-search-dirs".
(racket, racket-minimal)[inputs]: Add bash-minimal as an explicit input.
(racket-minimal)[source]: Adjust to inherit patches from racket.
(racket-minimal)[arguments]: Inherit from racket: changes no longer needed.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/lksctp-tools-1.0.18-fix-header-file-name.patch:
New file.
* gnu/local.mk[patches]: Add it.
* gnu/packages/networking.scm(/lksctp-tools)[source]: Use this patch.
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* gnu/packages/qt.scm (python-pyqt)
[source]: Remove pyqt-public-sip.patch.
[propagated-inputs]: Add python-pyqt5-sip.
* gnu/packages/patches/pyqt-public-sip.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/virtualization.scm (libvirt): Update to 7.2.0.
[arguemnts]: Switch to meson, only build system supported by upstream.
[inputs]: Add libssh2 and readline.
[native-inputs]: Add bash-completion, gettext, python-docutils and
rpcsvc-proto.
* gnu/packages/patches/libvirt-add-install-prefix.patch: New file...
* gnu/local.mk: ...add it.
* gnu/packages/patches/libvirt-create-machine-cgroup.patch: Delete file,
merged by upstream.
Tested-by: Pierre Langlois <pierre.langlois@gmx.com>
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Take advantage of patches that have been accepted upstream.
These changes lay a foundation for reusing more of Chez's
build process for Racket.
* gnu/packages/patches/chez-scheme-build-util-paths-backport.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/chez.scm (chez-scheme)[source](patches): Use it.
[source](snippet): Remove bundled libraries here, not in configure phase.
[inputs]: Organize. Move "nanopass", "stex", and "xorg-rgb" to ...
[native-inputs]: ... this field.
[arguments]: Add (ice-9 ftw) to #:modules. Remove unneeded
'patch-processor-detection' phase. Add 'unpack-nanopass+stex' phase
(refactored from 'configure'). Simplify 'configure' phase by removing
patches that have been upstreamed. Add "--nogzip-man-pages" flag so we can
remove 'make-manpages-writable' phase. Stop ignoring #:configure-flags,
move "--threads" there, and remove unneeded workaround. Add 'prepare-stex'
phase (refactored from 'install-doc'). Use it to streamline 'install-doc'
phase, installing all of the right files into the right places.
Signed-off-by: Leo Prikler <leo.prikler@student.tugraz.at>
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* gnu/packages/virtualization.scm (runc): Update to 1.0.0-rc93.
[source]: Remove the patches field.
[phases]{unpack}: Remove override.
{build}: Add the man target.
{check}: Make conditional based on TESTS?.
{install}: Add the install-man target.
[native-inputs]: Add go-github-com-go-md2man.
[home-page]: Update.
* gnu/packages/patches/runc-CVE-2019-5736.patch: Delete file.
* gnu/local.mk: Un-register it.
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* gnu/packages/docker.scm (containerd): Update to 1.4.4. Delete
trailing #t.
[arguments]: Set a MAKE-FLAGS binding.
[phases]{patch-paths}: Patch the reference to 'unpigz'.
{build, install}: Use the MAKE-FLAGS variable.
[inputs]: Add pigz.
* gnu/packages/patches/containerd-test-with-go1.13.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
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* gnu/packages/messaging.scm (pidgin): Update to 2.14.2.
[source]: Remove pidgin-vv-gst.patch.
* gnu/packages/patches/pidgin-vv-gst.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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Fixes CVE-2021-22876 and CVE-2021-22890.
* gnu/packages/curl.scm (curl/fixed): New variable.
(curl)[replacement]: New field.
* gnu/packages/patches/curl-7.76-use-ssl-cert-env.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/admin.scm (wpa-supplicant-minimal): Apply patch.
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* gnu/packages/patches/llhttp-bootstrap-CVE-2020-8287.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/node.scm (llhttp-bootstrap): New variable.
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* gnu/packages/patches/opendht-fix-jami.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Un-register it.
* gnu/packages/networking.scm (opendht): Update to 2.2.0rc4.
[patches]: Remove field.
[inputs]: Use nettle-3.7.
[native-inputs]: Move restinio to...
[propagated-inputs]: ... here.
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The update causes virsh to fail <https://bugs.gnu.org/47541>.
This reverts commit 383b02a370252c08eb1d43ac94d659c1d3993a35.
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