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2021-12-16gnu: Add r-singler.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-singler): New variable.
2021-12-16gnu: Add r-celldex.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-celldex): New variable.
2021-12-14gnu: Add r-maftools.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-maftools): New variable.
2021-12-14gnu: Add r-tcgabiolinks.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable.
2021-12-14gnu: Add r-tcgabiolinksgui-data.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable.
2021-12-13Merge branch 'core-updates-frozen' into 'master'.Maxim Cournoyer
At last!
2021-12-13gnu: Further simplify package inputs.Ludovic Courtès
This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-13gnu: Add r-chromvarmotifs.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-13gnu: Add r-sanssouci.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
2021-12-13gnu: Add r-isoformswitchanalyzer.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
2021-12-13gnu: Add r-drimseq.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
2021-12-13gnu: Add r-dearseq.Marcel Schilling
* gnu/packages/bioconductor.scm (r-dearseq): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-12-03gnu: r-flowclust: Add gsl.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally committed comment character.
2021-12-02gnu: Add r-scdblfinder.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
2021-12-01gnu: Add r-phyloseq.Nicolas Vallet
* gnu/packages/cran.scm (r-phyloseq): New variable Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-30gnu: Add r-fmcsr.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-fmcsr): New variable.
2021-11-27gnu: Add r-xmapbridge.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-xmapbridge): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-27gnu: Add r-xina.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-xina): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-27gnu: Add r-stringdb.Mădălin Ionel Patrașcu
* gnu/packages/bioconductor.scm (r-stringdb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2021-11-26gnu: Add r-derfinderhelper.zimoun
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-24gnu: r-s4vectors: Update to 0.32.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
2021-11-24gnu: r-mixomics: Update to 6.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
2021-11-24gnu: r-xcms: Update to 3.16.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
2021-11-24gnu: r-dose: Update to 3.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
2021-11-24gnu: r-genomicranges: Update to 1.46.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
2021-11-24gnu: r-biocparallel: Update to 1.28.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1.
2021-11-24gnu: r-biomart: Update to 2.50.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1.
2021-11-24gnu: Add r-bsgenome-drerio-ucsc-danrer11.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable.
2021-11-18gnu: r-bgeecall: Fix typo.Vagrant Cascadian
* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows to generate" to "allows generating".
2021-11-18gnu: r-msfeatures: Fix typos.Vagrant Cascadian
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from "allows to" to "can be used" and from "allows to aggregate" to "allows aggregating".
2021-11-18gnu: r-tximeta: Update to 1.12.3.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
2021-11-18gnu: r-biodb: Update to 1.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
2021-11-18gnu: r-chromstar: Update to 1.20.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
2021-11-18gnu: r-scran: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
2021-11-18gnu: r-hdf5array: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
2021-11-18gnu: r-s4vectors: Update to 0.32.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
2021-11-18gnu: r-biocset: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
2021-11-18gnu: r-biocpkgtools: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
2021-11-18gnu: r-mixomics: Update to 6.18.0.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
2021-11-18gnu: r-rsubread: Update to 2.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
2021-11-18gnu: r-geoquery: Update to 2.62.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1. [propagated-inputs]: Add r-r-utils.
2021-11-18gnu: r-icobra: Update to 1.22.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
2021-11-18gnu: r-ggtree: Update to 3.2.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
2021-11-18gnu: r-treeio: Update to 1.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
2021-11-18gnu: r-systempiper: Update to 2.0.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
2021-11-18gnu: r-msnbase: Update to 2.20.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
2021-11-18gnu: r-ensembldb: Update to 2.18.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
2021-11-18gnu: r-chipseeker: Update to 1.30.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
2021-11-18gnu: r-annotationdbi: Update to 1.56.2.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.