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2019-01-25gnu: python-sqlalchemy: Use PYPI-URI.Ricardo Wurmus
* gnu/packages/databases.scm (python-sqlalchemy)[source]: Use PYPI-URI.
2019-01-16gnu: Move dbm databases to new module.Ricardo Wurmus
* gnu/packages/databases.scm (gdbm, bdb, bdb-5.3): Move from here... * gnu/packages/dbm.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/audio.scm, gnu/packages/avahi.scm, gnu/packages/backup.scm, gnu/packages/cobol.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/finance.scm, gnu/packages/game-development.scm, gnu/packages/gnome.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/man.scm, gnu/packages/nvi.scm, gnu/packages/openldap.scm, gnu/packages/package-management.scm, gnu/packages/php.scm, gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/sawfish.scm: Update module references.
2019-01-16gnu: Move sqlite to separate module.Ricardo Wurmus
* gnu/packages/databases.scm (sqlite, sqlite-3.26.0, sqlite-with-fts5, sqlite-with-column-metadata): Move variables from here... * gnu/packages/sqlite.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/apl.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/code.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/dc.scm, gnu/packages/disk.scm, gnu/packages/ebook.scm, gnu/packages/education.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/file-systems.scm, gnu/packages/freedesktop.scm, gnu/packages/ftp.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gps.scm, gnu/packages/guile.scm, gnu/packages/ibus.scm, gnu/packages/kerberos.scm, gnu/packages/kodi.scm, gnu/packages/lisp.scm, gnu/packages/mail.scm, gnu/packages/messaging.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nfs.scm, gnu/packages/ocaml.scm, gnu/packages/package-management.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/php.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/scheme.scm, gnu/packages/sync.scm, gnu/packages/syndication.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/web-browsers.scm, gnu/packages/webkit.scm: Adjust module references.
2019-01-15gnu: Separate Python core packages from the rest.Ricardo Wurmus
* gnu/packages/python.scm: Move hundreds of package definitions from here... * gnu/packages/python-xyz.scm: ...to this new module. * gnu/local.mk (GNU_SYSTEM_MODULES): Add it. * gnu/packages/ada.scm, gnu/packages/admin.scm, gnu/packages/android.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/benchmark.scm, gnu/packages/bioinformatics.scm, gnu/packages/bittorrent.scm, gnu/packages/calendar.scm, gnu/packages/check.scm, gnu/packages/chemistry.scm, gnu/packages/cluster.scm, gnu/packages/compression.scm, gnu/packages/connman.scm, gnu/packages/crypto.scm, gnu/packages/cups.scm, gnu/packages/databases.scm, gnu/packages/dav.scm, gnu/packages/direct-connect.scm, gnu/packages/disk.scm, gnu/packages/django.scm, gnu/packages/dlang.scm, gnu/packages/docker.scm, gnu/packages/ebook.scm, gnu/packages/elf.scm, gnu/packages/emacs.scm, gnu/packages/emulators.scm, gnu/packages/engineering.scm, gnu/packages/enlightenment.scm, gnu/packages/finance.scm, gnu/packages/fltk.scm, gnu/packages/fontutils.scm, gnu/packages/freedesktop.scm, gnu/packages/game-development.scm, gnu/packages/games.scm, gnu/packages/geo.scm, gnu/packages/gl.scm, gnu/packages/glib.scm, gnu/packages/gnome.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/graph.scm, gnu/packages/graphics.scm, gnu/packages/graphviz.scm, gnu/packages/gtk.scm, gnu/packages/ham-radio.scm, gnu/packages/image-processing.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/jrnl.scm, gnu/packages/julia.scm, gnu/packages/kde-frameworks.scm, gnu/packages/key-mon.scm, gnu/packages/libffi.scm, gnu/packages/libreoffice.scm, gnu/packages/libusb.scm, gnu/packages/lirc.scm, gnu/packages/logging.scm, gnu/packages/machine-learning.scm, gnu/packages/mail.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/medical.scm, gnu/packages/messaging.scm, gnu/packages/monitoring.scm, gnu/packages/mp3.scm, gnu/packages/mpd.scm, gnu/packages/music.scm, gnu/packages/networking.scm, gnu/packages/nutrition.scm, gnu/packages/openldap.scm, gnu/packages/openstack.scm, gnu/packages/package-management.scm, gnu/packages/password-utils.scm, gnu/packages/patchutils.scm, gnu/packages/pdf.scm, gnu/packages/photo.scm, gnu/packages/polkit.scm, gnu/packages/protobuf.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/qt.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/search.scm, gnu/packages/selinux.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/simulation.scm, gnu/packages/ssh.scm, gnu/packages/statistics.scm, gnu/packages/storage.scm, gnu/packages/sync.scm, gnu/packages/terminals.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/tryton.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/virtualization.scm, gnu/packages/vpn.scm, gnu/packages/web-browsers.scm, gnu/packages/web.scm, gnu/packages/wicd.scm, gnu/packages/xdisorg.scm, gnu/packages/xorg.scm: Update module references.
2019-01-07gnu: r-rmysql: Move from databases.scm to cran.scmRicardo Wurmus
* gnu/packages/databases.scm (r-rmysql): Move from here... * gnu/packages/cran.scm (r-rmysql): ...to here.
2019-01-06gnu: recutils: Update to 1.8.Efraim Flashner
* gnu/packages/databases.scm (recutils): Update to 1.8. [source]: Remove snippet. [arguments]: Remove custom 'set-bash4.4-header-location phase. Enable parallel tests. [inputs]: Move check ... [native-inputs]: ... to here. Add pkg-config.
2018-12-18gnu: sqlite: Replace with 3.26.0 [security fixes].Alex Vong
Fixes <https://bugs.gnu.org/33751>. Reported by Marius Bakke <mbakke@fastmail.com>. * gnu/packages/databases.scm (sqlite-3.26.0): New public variable. (sqlite)[replacement]: Use it. (sqlite-with-fts5): Use 'package/inherit'. (sqlite-with-column-metadata): Likewise. Modified-by: Mark H Weaver <mhw@netris.org>
2018-12-04gnu: mongo-tools: Fix build.Christopher Baines
I guess this broke when upgrading go. I did try upgrading to the later patch and minor releases, but they had similar problems, so lets upgrade separately. * gnu/packages/databases.scm (mongo-tools)[arguments]: Add patch-source phase.
2018-11-29Merge branch 'master' into core-updatesMarius Bakke
2018-11-24gnu: sqlcipher: Update to 3.4.2.Brett Gilio
* gnu/packages/databases.scm (sqlcipher): Update to 3.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-24gnu: mariadb: Update to 10.1.37 [security fixes].Marius Bakke
This release fixes CVE-2018-3282, CVE-2018-3174, CVE-2018-3143, CVE-2018-3156, and CVE-2018-3251. See <https://mariadb.com/kb/en/library/mariadb-10137-release-notes/> for details. * gnu/packages/databases.scm (mariadb): Update to 10.1.37.
2018-11-14gnu: databases: Return #t from all phases.Mark H Weaver
* gnu/packages/databases.scm (4store, go-gopkg.in-mgo.v2, mongodb) (sparql-query, tdb, sqlcipher, python-sqlparse, mongo-tools): Return #t from all phases, use invoke where appropriate, and remove vestigial plumbing.
2018-11-14Merge branch 'master' into core-updatesMarius Bakke
2018-11-11gnu: PostgreSQL: Update to 10.6 [fixes CVE-2018-16850].Leo Famulari
* gnu/packages/databases.scm (postgresql): Update to 10.6.
2018-11-11gnu: python-rq: Update to 0.12.0.Efraim Flashner
* gnu/packages/databases.scm (python-rq): Update to 0.12.0.
2018-11-11gnu: python-alembic: Update to 1.0.2.Efraim Flashner
* gnu/packages/databases.scm (python-alembic, python2-alembic): Update to 1.0.2.
2018-11-11gnu: mdbtools: Fetch sources from git.Ricardo Wurmus
* gnu/packages/databases.scm (mdbtools)[source]: Fetch from git.
2018-11-11gnu: mdbtools: Remove custom bootstrap phase.Ricardo Wurmus
* gnu/packages/databases.scm (mdbtools)[arguments]: Remove.
2018-11-09Merge branch 'master' into core-updatesMarius Bakke
2018-11-08gnu: PostgreSQL 9: Update to 9.6.11 [fixes CVE-2018-16850].Leo Famulari
* gnu/packages/databases.scm (postgresql-9.6): Update to 9.6.11.
2018-11-07gnu: rocksdb: Update to 5.15.10.Marius Bakke
* gnu/packages/databases.scm (rocksdb): Update to 5.15.10.
2018-11-07gnu: rocksdb: Don't use unstable tarball.Marius Bakke
* gnu/packages/databases.scm (rocksdb)[source]: Use GIT-FETCH.
2018-11-05Merge branch 'master' into core-updatesMarius Bakke
2018-10-28gnu: qt: Use system sqlite.Efraim Flashner
* gnu/packages/databases.scm (sqlite-with-column-metadata): New variable. * gnu/packages/qt.scm (qt, qtbase)[source]: Remove bundled sqlite. [inputs]: Add sqlite-with-column-metadata. [arguments]: Add configure-flag to use system sqlite.
2018-10-24gnu: mongodb: Use INVOKE.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (mongodb)[arguments]: Substitute INVOKE for SYSTEM*.
2018-10-21Merge branch 'master' into core-updatesMarius Bakke
2018-10-19gnu: guile-wiredtiger: Update to 0.7.0.Amirouche
* gnu/packages/databases.scm (guile-wiredtiger): Update to 0.7.0. [inputs]: Replace wiredtiger with wiredtiger-3 [propagated-inputs]: Remove guile-lib, add guile-bytestructures [description]: Update it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-19gnu: Add wiredtiger 3.1.0Amirouche
* gnu/packages/databases.scm (wiredtiger-3): New variable that inherits from wiredtiger Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-17Merge branch 'master' into core-updatesMarius Bakke
2018-10-10gnu: python-pickleshare: Update to 0.7.5.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pickleshare): Update to 0.7.5.
2018-10-05Merge branch 'master' into core-updatesMarius Bakke
2018-10-03gnu: recutils: Adjust Gnulib to libc 2.28.Ludovic Courtès
Fixes <https://bugs.gnu.org/32776>. * gnu/packages/databases.scm (recutils)[modules, snippet]: New fields.
2018-09-28gnu: python-fakeredis: Edit description.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-fakeredis)[description]: Fix (upstream) typo. Get carried away.
2018-09-26Merge branch 'master' into core-updatesMarius Bakke
2018-09-21gnu: perl-dbd-mysql: Update to 4.048.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.048.
2018-09-13Merge branch 'master' into core-updatesLeo Famulari
2018-09-11gnu: perl-dbd-mysql: Update to 4.047.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.047. [arguments]: Add 'skip-library-detection' phase.
2018-09-09gnu: mariadb: Move unbundle substitutions to source snippet.Marius Bakke
* gnu/packages/databases.scm (mariadb)[source](snippet): Add two substitutions from ... [arguments]: The 'unbundle' phase here. Rename to 'fix-pcre-detection.
2018-09-09gnu: mariadb: Update to 10.1.36.Marius Bakke
* gnu/packages/databases.scm (mariadb): Update to 10.1.36. [arguments]: Disable one new test.
2018-08-25Merge branch 'staging' into core-updatesMarius Bakke
2018-08-25Merge branch 'master' into stagingMarius Bakke
2018-08-24gnu: boost: Move 1.59.0 definition to boost.scm.Ludovic Courtès
Fixes a regression introduced in commit 7cbf06d8c2935abfc6c688cf3f9b99e0e5393960 where the top-level code of these two modules would depend on each other, leading to "boost: unbound variable" kind of errors in some circumstances. * gnu/packages/databases.scm (boost-for-mysql): Move to... * gnu/packages/boost.scm (boost-for-mysql): ... here. Make public and add 'properties' field.
2018-08-22gnu: perl-dbd-mysql: Update to 4.046.Leo Famulari
* gnu/packages/databases.scm (perl-dbd-mysql): Update to 4.046. [source]: Update URL. Remove 'perl-dbd-mysql-CVE-2017-10788.patch'. * gnu/packages/patches/perl-dbd-mysql-CVE-2017-10788.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-22Merge branch 'master' into stagingMarius Bakke
2018-08-22gnu: Remove GCC ICE workarounds.Marius Bakke
* gnu/packages/patches/doxygen-gcc-ice.patch, gnu/packages/patches/mariadb-gcc-ice.patch, gnu/packages/patches/perf-gcc-ice.patch: Delete files * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/databases.scm (mariadb)[source](patches): Likewise. * gnu/packages/linux.scm (perf)[source](patches): Likewise. * gnu/packages/documentation.scm (doxygen)[inputs, arguments]: Likewise.
2018-08-22gnu: mariadb: Remove huge mysql_embedded executable.Marius Bakke
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22gnu: mariadb: Propagate OpenSSL.Marius Bakke
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ... [propagated-inputs]: ... here. (r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22gnu: Add sqlcrush.Tobias Geerinckx-Rice
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22gnu: Add python-pymysql.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New public variables.
2018-08-21gnu: gdbm: Update to 1.18.Marius Bakke
* gnu/packages/databases.scm (gdbm): Update to 1.18.
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