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2015-11-02gnu: gsl: Enable tests.Efraim Flashner
* gnu/packages/maths.scm (gsl)[arguments]: Enable tests for i686-linux.
2015-11-02gnu: gsl: Update to 2.0.Efraim Flashner
* gnu/packages/maths.scm (gsl): Update to 2.0. [source]: Remove patches. * gnu/packages/patches/gsl-poly-test-fix-pt1.patch, gnu/packages/patches/gsl-poly-test-fix-pt2.patch: Remove files. * gnu-system.am (dist_patch_DATA): Remove patches.
2015-10-30gnu: openblas: Make substitutable on MIPS.Ricardo Wurmus
* gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable when the system is MIPS.
2015-10-30gnu: openblas: Set TARGET to SICORTEX on MIPS.Ricardo Wurmus
* gnu/packages/maths.scm (openblas)[arguments]: Add "TARGET=SICORTEX" to make-flags when building for MIPS.
2015-10-29gnu: openblas: Update to 0.2.15.Ricardo Wurmus
* gnu/packages/maths.scm (openblas): Update to 0.2.15.
2015-10-20gnu: units: Update to 2.12.Efraim Flashner
* gnu/packages/maths.scm (units): Update to 2.12.
2015-10-02gnu: glpk: Update to 4.56.Andreas Enge
* gnu/packages/maths.scm (glpk): Update to 4.56.
2015-10-01gnu: openblas: Fix configure flags on armhf and take target system into ↵Andreas Enge
account for cross building. * gnu/packages/maths.scm (openblas)[arguments]: Make package substitutable and enable runtime cpu detection only on x86 systems. Take the target system into account when cross compiling.
2015-09-13Merge branch 'master' into core-updatesLudovic Courtès
2015-09-06gnu: Add FLANN.Andreas Enge
* gnu/packages/maths.scm (flann): New variable.
2015-08-29gnu: Use 'install-file' instead of 'mkdir-p' and 'copy-file' in obvious cases.Ludovic Courtès
* gnu/packages/bioinformatics.scm (bedtools, bowtie, bwa, hisat, samtools, plink, star): Use 'install-file' instead of 'mkdir-p' + 'copy-file'. * gnu/packages/check.scm (catch-framework): Likewise. * gnu/packages/code.scm (global): Likewise. * gnu/packages/emacs.scm (magit-svn, haskell-mode, emacs-pdf-tools): Likewise. * gnu/packages/engineering.scm (fastcap, fasthenry): Likewise. * gnu/packages/gnuzilla.scm (nss): Likewise. * gnu/packages/guile.scm (guile-minikanren): Likewise. * gnu/packages/java.scm (swt): Likewise. * gnu/packages/make-bootstrap.scm (%static-binaries): Likewise. * gnu/packages/maths.scm (lpsolve): Likewise. * gnu/packages/mp3.scm (mpc123): Likewise. * gnu/packages/ninja.scm (ninja): Likewise. * gnu/packages/python.scm (python-numpy, python-pyparsing): Likewise. * gnu/packages/screen.scm (dtach): Likewise. * gnu/packages/synergy.scm (synergy): Likewise. * gnu/packages/textutils.scm (utf8proc): Likewise. * gnu/packages/version-control.scm (git-test-sequence): Likewise. * gnu/packages/wicd.scm (wicd): Likewise.
2015-07-21gnu: pspp: Update to 0.8.5.Ludovic Courtès
* gnu/packages/maths.scm (pspp)[source]: Update to 0.8.5. [native-inputs]: Add TEXINFO.
2015-07-18gnu packages: Clean up synopses and descriptions.Alex Kost
* gnu/packages/admin.scm, gnu/packages/algebra.scm, gnu/packages/audio.scm, gnu/packages/backup.scm, gnu/packages/base.scm, gnu/packages/bittorrent.scm, gnu/packages/code.scm, gnu/packages/compression.scm, gnu/packages/databases.scm, gnu/packages/enchant.scm, gnu/packages/firmware.scm, gnu/packages/fonts.scm, gnu/packages/freedesktop.scm, gnu/packages/games.scm, gnu/packages/gd.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gsasl.scm, gnu/packages/gstreamer.scm, gnu/packages/gtk.scm, gnu/packages/guile.scm, gnu/packages/haskell.scm, gnu/packages/language.scm, gnu/packages/lesstif.scm, gnu/packages/libreoffice.scm, gnu/packages/linux.scm, gnu/packages/llvm.scm, gnu/packages/maths.scm, gnu/packages/mcrypt.scm, gnu/packages/mit-krb5.scm, gnu/packages/mp3.scm, gnu/packages/ncdu.scm, gnu/packages/networking.scm, gnu/packages/ntp.scm, gnu/packages/ocaml.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl.scm, gnu/packages/pretty-print.scm, gnu/packages/pulseaudio.scm, gnu/packages/python.scm, gnu/packages/rdesktop.scm, gnu/packages/rdf.scm, gnu/packages/ruby.scm, gnu/packages/slang.scm, gnu/packages/slim.scm, gnu/packages/telephony.scm, gnu/packages/tls.scm, gnu/packages/tmux.scm, gnu/packages/tre.scm, gnu/packages/unrtf.scm, gnu/packages/version-control.scm, gnu/packages/vpn.scm, gnu/packages/web.scm, gnu/packages/wget.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xiph.scm: Fix typos. Trim long lines. Add missing periods in the end of sentences. Use double spaces between sentences. Remove trailing whitespaces.
2015-07-18gnu packages: Avoid description lines with leading "(".Alex Kost
* gnu/packages/curl.scm (curl): Reformat description to avoid a line beginning with "(" because such lines break font-lock highlighting in Emacs. * gnu/packages/flashing-tools.scm (dfu-programmer): Likewise. * gnu/packages/games.scm (gnugo): Likewise. * gnu/packages/gnome.scm (json-glib): Likewise. * gnu/packages/image.scm (jbig2dec): Likewise. * gnu/packages/maths.scm (units): Likewise. * gnu/packages/pdf.scm (mupdf): Likewise. * gnu/packages/web.scm (perl-encode-locale): Likewise. * gnu/packages/wordnet.scm (wordnet): Likewise. * gnu/packages/xml.scm (libxml2):Likewise.
2015-06-29gnu: Add deal.II.Eric Bavier
* gnu/packages/maths.scm (dealii, dealii-openmpi): New variables. * gnu/packages/patches/dealii-p4est-interface.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
2015-06-29gnu: Add SLEPc.Eric Bavier
* gnu/packages/maths.scm (slepc, slepc-complex, slepc-openmpi) (slepc-complex-openmpi): New variables.
2015-06-29gnu: Add arpack-ng-openmpi.Eric Bavier
* gnu/packages/maths.scm (arpack-ng-openmpi): New variable.
2015-06-29gnu: petsc: Upgrade to 3.6.0.Eric Bavier
* gnu/packages/maths.scm (petsc): Upgrade to 3.6.0. * gnu/packages/patches/petsc-fix-threadcomm.patch: Delete patch. * gnu-system.am (dist_patch_DATA): Remove it.
2015-06-29gnu: Add MUMPS.Eric Bavier
* gnu/packages/maths.scm (mumps, mumps-metis, mumps-openmpi) (mumps-metis-openmpi): New variables. * gnu/packages/patches/mumps-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
2015-06-29gnu: Add METIS.Eric Bavier
* gnu/packages/maths.scm (metis): New variable.
2015-06-29gnu: Add p4est.Eric Bavier
* gnu/packages/maths.scm (p4est, p4est-openmpi): New variables.
2015-06-29gnu: Add ScaLAPACK.Eric Bavier
* gnu/packages/maths.scm (scalapack): New variable.
2015-06-29gnu: scotch, pt-scotch: Build esmumps libraries.Eric Bavier
* gnu/packages/maths.scm (scotch)[arguments]: Add 'build-esmumps phase. Install esmumps libraries and headers in 'install phase. (pt-scotch)[arguments]: Build ptesmumps in 'build phase. Add make parallelism.
2015-06-29gnu: scotch, pt-scotch: Use modify-phases.Eric Bavier
* gnu/packages/maths.scm (scotch, pt-scotch)[arguments]: Use modify-phases.
2015-06-29gnu: Update scotch to 6.0.4.Eric Bavier
* gnu/packages/maths.scm (scotch): Update to 6.0.4. [arguments]: Add -fPIC to CFLAGS. * gnu/packages/patches/scotch-test-threading.patch: Adjust patch for a new set of test fixes. * gnu/packages/patches/pt-scotch-build-parallelism.patch: New patch. * gnu-system.am (dist_patch_DATA): Add it.
2015-06-25gnu: Replace versioned gfortran inputs with just "gfortran".Ricardo Wurmus
* gnu/packages/julia.scm (julia)[inputs]: Replace "gfortran-4.8" with "gfortran". * gnu/packages/machine-learning.scm (randomjungle)[native-inputs]: Likewise. * gnu/packages/maths.scm (arpack-ng, lapack, petsc, superlu) (superlu-dist, openblas, openspecfun, atlas)[inputs]: Likewise. (octave)[native-inputs]: Likewise. (gmsh)[propagated-inputs]: Likewise. * gnu/packages/mpi.scm (openmpi)[inputs]: Likewise. * gnu/packages/python.scm (python-numpy-bootstrap)[native-inputs]: Likewise. * gnu/packages/python.scm (python-scipy)[native-inputs]: Likewise. * gnu/packages/statistics.scm (r)[inputs]: Replace "gfortran-4.9" with "gfortran".
2015-06-20gnu: gsl: Fix poly test on i686.Mark H Weaver
* gnu/packages/patches/gsl-poly-test-fix-pt1.patch, gnu/packages/patches/gsl-poly-test-fix-pt2.patch: New files. * gnu-system.am (dist_patch_DATA): Add them. * gnu/packages/maths.scm (gsl)[source]: Add patches.
2015-06-11packages: Make 'location' field innate.Ludovic Courtès
* guix/packages.scm (<package>)[location]: Add 'innate' property. * guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and 'location' field. * gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field. * gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final): Likewise. * gnu/packages/cross-base.scm (cross): Likewise. * gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise. * gnu/packages/make-bootstrap.scm (tarball-package): Likewise. * gnu/packages/maths.scm (petsc-complex): Likewise.
2015-05-26gnu: Add wxmaxima.Mark H Weaver
* gnu/packages/maths.scm (wxmaxima): New variable.
2015-05-26gnu: maxima: Update to 5.36.1.Mark H Weaver
* gnu/packages/patches/maxima-defsystem-mkdir.patch: New file. * gnu-system.am (dist_patch_DATA): Add it. * gnu/packages/maths.scm (maxima): Update to 5.36.1. Add patch.
2015-05-20gnu: Add lpsolve.Andreas Enge
* gnu/packages/maths.scm (lpsolve): New variable.
2015-05-20gnu: openblas: Disable DYNAMIC_ARCH on MIPS.Ricardo Wurmus
* gnu/packages/maths.scm (openblas)[arguments]: Do not pass DYNAMIC_ARCH when building for MIPS. Also make non-substitutable for MIPS.
2015-05-15gnu: openblas: Update to 0.2.14.Ricardo Wurmus
* gnu/packages/maths.scm (openblas): Update to 0.2.14.
2015-05-11gnu: octave: Add fftw, arpack, and glu inputs.Eric Bavier
* gnu/packages/maths.scm (octave)[inputs]: Add fftw, fftwf, arpack, and glu. [description]: Wrap to 80 columns.
2015-03-26gnu: openblas: build for all supported CPUs.Ricardo Wurmus
* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to make flags. Remove "#:substitutable? #f".
2015-03-23Remove unused patchelf inputs.Mark H Weaver
* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove unused patchelf from native-inputs.
2015-03-23gnu: Add double-conversion.Ricardo Wurmus
* gnu/packages/maths.scm (double-conversion): New variable.
2015-03-23gnu: Add SuiteSparse.Ricardo Wurmus
* gnu/packages/maths.scm (suitesparse): New variable.
2015-03-23gnu: Add openblas.Ricardo Wurmus
* gnu/packages/maths.scm (openblas): New variable.
2015-03-14gnu: Update packages to use 'non-copyleft' instead of 'bsd-style'.Ludovic Courtès
* gnu/packages/avr.scm, gnu/packages/compression.scm, gnu/packages/curl.scm, gnu/packages/cyrus-sasl.scm, gnu/packages/databases.scm, gnu/packages/firmware.scm, gnu/packages/flex.scm, gnu/packages/fontutils.scm, gnu/packages/gd.scm, gnu/packages/ghostscript.scm, gnu/packages/gnunet.scm, gnu/packages/graphics.scm, gnu/packages/hugs.scm, gnu/packages/image.scm, gnu/packages/linux.scm, gnu/packages/mail.scm, gnu/packages/maths.scm, gnu/packages/mit-krb5.scm, gnu/packages/python.scm, gnu/packages/rdf.scm, gnu/packages/ssh.scm, gnu/packages/tcl.scm, gnu/packages/xdisorg.scm, gnu/packages/xiph.scm, gnu/packages/yasm.scm, gnu/packages/zip.scm: Use 'non-copyleft' instead of 'bsd-style'.
2015-03-14gnu: Add glm.Andreas Enge
* gnu/packages/maths.scm (glm): New variable. Co-authored-by: John Darrington <john@darrington.wattle.id.au>
2015-03-13gnu: hdf5: Add input zlib.Andreas Enge
* gnu/packages/maths.scm (hdf5): Add input zlib.
2015-03-12gnu: hdf5: Combine all outputs into one.Andreas Enge
* gnu/packages/maths.scm (hdf5): Combine the outputs "out", "bin", "lib" and "include" into "out". (gmsh, octave): Adapt list of inputs.
2015-03-10gnu: Add openspecfun.Ricardo Wurmus
* gnu/packages/maths.scm (openspecfun): New variable.
2015-03-10gnu: Add openlibm.Ricardo Wurmus
* gnu/packages/maths.scm (openlibm): New variable.
2015-03-05gnu: Add muparser.Ricardo Wurmus
* gnu/packages/maths.scm (muparser): New variable.
2015-03-04Merge branch 'core-updates'.Ludovic Courtès
2015-03-04gnu: octave: Update to 3.8.2.宋文武
* gnu/packages/maths.scm (octave): Update to 3.8.2.
2015-02-28gnu: Add 'file-name' fields for github source tarballs without a name.Mark H Weaver
* gnu/packages/aarddict.scm (aarddict), gnu/packages/algebra.scm (arb), gnu/packages/audio.scm (jack-2, lvtk), gnu/packages/bioinformatics.scm (bedops, bedtools, bowtie), gnu/packages/game-development.scm (tiled), gnu/packages/games.scm (minetest-data, minetest, retroarch), gnu/packages/jrnl.scm (jrnl), gnu/packages/kde.scm (qjson), gnu/packages/libevent.scm (libuv), gnu/packages/linux.scm (pflask), gnu/packages/mail.scm (offlineimap, libetpan), gnu/packages/maths.scm (arpack-ng), gnu/packages/ninja.scm (ninja), gnu/packages/nutrition.scm (gourmet), gnu/packages/python.scm (python-cairocffi), gnu/packages/rdf.scm (lrdf), gnu/packages/ruby.scm (ruby-i18n), gnu/packages/sxiv.scm (sxiv): Add 'file-name' field to origin.
2015-02-20gnu: Add arpack-ng.Ricardo Wurmus
* gnu/packages/maths.scm (arpack-ng): New variable.
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