Age | Commit message (Collapse) | Author |
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* gnu/packages/maths.scm (octave): Update to 4.4.0.
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* gnu/packages/mpi.scm (openmpi): Update to 3.0.1.
[arguments]: In 'remove-absolute' phase, adjust romio file name.
* gnu/packages/maths.scm (scalapack)[arguments]: Add
'set-test-environment' phase.
(slepc-openmpi)[arguments]: Likewise.
(mumps-openmpi)[arguments]: Likewise.
(superlu-dist)[arguments]: In 'check' phase, set
'OMPI_MCA_plm_rsh_agent'.
(scotch)[arguments]: In 'build-esmumps', likewise.
(p4est)[arguments]: Add 'set-test-environment' phase.
(hypre-openmpi)[arguments]: Likewise.
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* gnu/packages/maths.scm (superlu-dist): Update to 5.3.0.
[source](snippet): Adapt file name and function names to new version.
Remove 'delete-file' call.
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* gnu/packages/maths.scm (r-desolve): Update to 1.21.
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Previously the test suite would fail to run 'ppmquant', though it would
silently ignore it.
* gnu/packages/maths.scm (hypre)[native-inputs]: Add PERL.
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* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Inherit
arguments from ARPACK-NG. Previously the 'configure' phase would fail
due to the lack of a 'configure' script.
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* gnu/packages/maths.scm (python-kiwisolver, python2-kiwisolver): New public
variables.
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* gnu/packages/maths.scm (gnuplot): Update to 5.2.2.
[arguments]: New field.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/maths.scm (mumps): Update to 5.1.2.
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* gnu/packages/patches/pt-scotch-build-parallelism.patch: Delete files.
* gnu/packages/patches/scotch-build-parallelism.patch,
gnu/packages/patches/scotch-graph-diam-64.patch,
gnu/packages/patches/scotch-graph-induce-type-64.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/maths.scm (scotch): Update to 6.0.5a.
[source](patches): Adjust accordingly.
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* gnu/packages/maths.scm (r-subplex): Update to 1.5-4.
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* gnu/packages/maths.scm (vc)[arguments]: Add "-DTARGET_ARCHITECTURE=none" to
#:configure-flags.
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* gnu/packages/maths.scm (qtoctave): New variable.
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* gnu/packages/maths.scm (octave)[inputs]: Add suitesparse, libsndfile,
portaudio and alsa-lib.
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* gnu/packages/maths.scm (tcalc): New variables.
Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
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* gnu/packages/maths.scm (scotch)[source]: Use predictable URI.
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* gnu/packages/maths.scm (openlibm): Update to 0.5.5.
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* gnu/packages/maths.scm (ceres-solver): Update to 1.14.0.
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* .mailmap: Correct name and Email for ng0.
* Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish
gnu/packages/accessibility.scm, gnu/packages/admin.scm,
gnu/packages/audio.scm, gnu/packages/autotools.scm,
gnu/packages/cdrom.scm, gnu/packages/check.scm,
gnu/packages/cinnamon.scm, gnu/packages/compression.scm,
gnu/packages/crypto.scm, gnu/packages/databases.scm,
gnu/packages/django.scm, gnu/packages/dns.scm,
gnu/packages/emacs.scm, gnu/packages/enlightenment.scm,
gnu/packages/fonts.scm, gnu/packages/fontutils.scm,
gnu/packages/forth.scm, gnu/packages/fvwm.scm,
gnu/packages/games.scm, gnu/packages/gl.scm,
gnu/packages/gnome.scm, gnu/packages/gnunet.scm,
gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm,
gnu/packages/gtk.scm, gnu/packages/guile-wm.scm,
gnu/packages/guile.scm, gnu/packages/haskell-check.scm,
gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm,
gnu/packages/image-viewers.scm, gnu/packages/image.scm,
gnu/packages/irc.scm, gnu/packages/language.scm,
gnu/packages/libcanberra.scm, gnu/packages/linux.scm,
gnu/packages/lisp.scm, gnu/packages/lolcode.scm,
gnu/packages/lxde.scm, gnu/packages/lxqt.scm,
gnu/packages/mail.scm, gnu/packages/markup.scm,
gnu/packages/mate.scm, gnu/packages/maths.scm,
gnu/packages/mc.scm, gnu/packages/messaging.scm,
gnu/packages/music.scm, gnu/packages/ncurses.scm,
gnu/packages/networking.scm, gnu/packages/nickle.scm,
gnu/packages/openbox.scm, gnu/packages/pdf.scm,
gnu/packages/perl-check.scm, gnu/packages/perl.scm,
gnu/packages/python-crypto.scm, gnu/packages/python-web.scm,
gnu/packages/python.scm, gnu/packages/qt.scm,
gnu/packages/ruby.scm, gnu/packages/rust.scm,
gnu/packages/scheme.scm, gnu/packages/serialization.scm,
gnu/packages/shells.scm, gnu/packages/ssh.scm,
gnu/packages/suckless.scm, gnu/packages/tbb.scm,
gnu/packages/telephony.scm, gnu/packages/text-editors.scm,
gnu/packages/textutils.scm, gnu/packages/time.scm,
gnu/packages/tls.scm, gnu/packages/tor.scm,
gnu/packages/version-control.scm, gnu/packages/video.scm,
gnu/packages/vim.scm, gnu/packages/web.scm,
gnu/packages/wm.scm, gnu/packages/xdisorg.scm,
gnu/packages/xfce.scm, gnu/packages/xml.scm,
gnu/packages/xorg.scm, gnu/services/certbot.scm,
gnu/services/desktop.scm, gnu/services/version-control.scm,
gnu/services/web.scm, guix/import/hackage.scm,
guix/licenses.scm: Likewise.
Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
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* gnu/packages/maths.scm (ruby-asciimath): New variable.
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* gnu/packages/maths.scm (octave): Update to 4.2.2.
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* gnu/packages/maths.scm (r-desolve): New variable.
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gnu/packages/maths.scm (r-subplex): New variable.
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Partly fixes <https://bugs.gnu.org/30282>.
* gnu/packages/maths.scm (arpack-ng): Update to 3.5.0.
[native-inputs]: New field.
(arpack-ng-3.3.0): New variable.
* gnu/packages/julia.scm (julia)[inputs]: Use ARPACK-NG-3.3.0.
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* gnu/packages/maths.scm (hdf5)[arguments]: Patch libhdf5.settings to prevent
the kernel version on the build node from affecting the output.
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* gnu/packages/maths.scm (dionysus): Update to 1.4.0.
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* gnu/packages/maths.scm (wxmaxima): Update to 18.02.0.
[source]: Add patch.
[build-system]: Use the cmake-build-system.
[native-inputs]: Remove autoconf and automake.
[arguments]: Disable tests, remove 'autoconf' phase.
* gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Add it.
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* gnu/packages/maths.scm (vc): Update to 1.3.3.
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* gnu/packages/maths.scm (lpsolve): Update to 5.5.2.5.
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* gnu/packages/maths.scm (lpsolve)[arguments]: Use INVOKE and
INSTALL-FILE, and end phases with #t.
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* gnu/packages/maths.scm (glpk): Update to 4.65.
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* gnu/packages/maths.scm (r-pracma): Update to 2.1.4.
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* gnu/packages/maths.scm (hdf5)[arguments]: Add -fPIC to CFLAGS and CXXFLAGS.
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* gnu/packages/maths.scm (mcrl2)[synopsis]: Fix typo.
[description]: Use @dfn.
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* gnu/packages/maths.scm (mcrl2): New variable.
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Follow-up to 94a1eb96d32fcce97ee5d9440ecffe22f7555cd5
* gnu/packages/maths.scm (slepc)[arguments]: Use 'apply' since 'flags' is a
list of configure arguments.
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* gnu/packages/maths.scm (elemental): New variable.
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* gnu/packages/maths.scm (slepc): Update to 3.8.2.
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SLEPc has been released under a 2-clause BSD licence since version 3.8.
* gnu/packages/maths.scm (slepc)[licence]: Switch to bsd-2.
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* gnu/packages/linux.scm (fbcat)[arguments]: Substitute INVOKE for
SYSTEM*.
* gnu/packages/maths.scm (slepc)[arguments]: Likewise.
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* gnu/packages/maths.scm (openspecfun): Update to 0.5.3.
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* gnu/packages/patches/opencascade-oce-glibc-2.26.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/maths.scm (opencascade-oce)[source]: Use it.
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* gnu/packages/maths.scm: Fix copyright line for Dave Love.
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* gnu/packages/bioinformatics.scm (r-sparql, r-acsnminer, r-gkmsvm)
(r-maldiquant, r-gprofiler)[home-page]: Use HTTPS.
* gnu/packages/cran.scm (r-colorspace, r-auc, r-calibrate, r-shape)
(r-compare, r-proxy, r-sp, r-rmtstat, r-lmtest, r-inline, r-bbmle)
(r-lpsolve, r-energy, r-suppdists, r-ksamples, r-cvst, r-drr, r-prodlim)
(r-ddalpha, r-rcpproll, r-ipred, r-psych, r-truncnorm, r-rsolnp, r-laeken)
(r-vcd, r-ica, r-scatterplot3d)[home-page]: Likewise.
* gnu/packages/machine-learning.scm (r-adaptivesparsity, r-kernlab)
[home-page]: Likewise.
* gnu/packages/maths.scm (r-quadprog, r-pracma)[home-page]: Likewise.
* gnu/packages/statistics.scm (r-boot, r-cluster, r-codetools, r-foreign)
(r-kernsmooth, r-nlme, r-mgcv, r-rpart, r-dichromat, r-estimability)
(r-pheatmap, r-labeling, r-magrittr, r-munsell, r-rcolorbrewer, r-sendmailr)
(r-gdtools, r-acepack, r-formula, r-locfit, r-chron, r-coda, r-backports)
(r-brew, r-commonmark, r-rstudioapi, r-plotrix, r-gridbase, r-bitops)
(r-catools, r-xnomial, r-lambda-r, r-whoreadsthis, r-futile-options)
(r-futile-logger, r-segmented, r-snow, r-iterators, r-foreach, r-doparallel)
(r-domc, r-irlba, r-registry, r-e1071, r-bigmemory-sri, r-r-methodss3)
(r-tidyselect, r-base64, r-runit, r-sfsmisc, r-gtools, r-gdata, r-gplots)
(r-ztable, r-vipor, r-sourcetools, r-statmod, r-compquadform, r-mixtools)
(r-fastica, r-diptest, r-modeltools, r-flexmix, r-deoptimr, r-pcapp)
(r-rrcov, r-fit-models, r-robust, r-trimcluster, r-fpc, r-fnn)
(r-modelmetrics, r-nloptr, r-lme4, r-tclust, r-lubridate)[home-page]:
Likewise.
* gnu/packages/web.scm (r-htmltools, r-hwriter, r-rjson, r-rook)[home-page]:
Likewise.
* doc/guix.texi (Invoking guix import, Invoking guix refresh): Likewise.
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