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2017-08-09gnu: dealii: Update to 8.5.0.Eric Bavier
* gnu/packages/maths.scm (dealii): Update to 8.5.0. [arguments]: Delete 'hint-example-prefix phase, which would need adjusting for this version. Users can use e.g. 'export DEAL_II_DIR=$GUIX_ENVIRONMENT'. Adjust configuration flags.
2017-08-09gnu: suitesparse: Update to 4.5.5.Eric Bavier
* gnu/packages/maths.scm (suitesparse): Update to 4.5.5. [source]: Add 'modules' and 'snippet' field to remove bundled source. [arguments]: Remove 'prepare-out' phase. Adjust #:make-flags for metis. Make build parallel, since it now appears to be safe. [inputs]: Add metis.
2017-08-09gnu: suitesparse: Use modify-phases.Eric Bavier
* gnu/packages/maths.scm (suitesparse)[arguments]: Use modify-phases.
2017-08-09gnu: petsc, slepc: Use 'parallel-job-count'.Eric Bavier
* gnu/packages/maths.scm (petsc, slepc)[arguments]: Set #:make-flags to override default unlimited '-j'. (petsc)[arguments]: Scrub build machine cores from installed files in 'clean-local-references' phase.
2017-08-09gnu: slepc: Update to 3.7.4.Eric Bavier
* gnu/packages/maths.scm (slepc): Update to 3.7.4. [source]: Use direct source link. Remove 'file-name' field.
2017-08-09gnu: petsc: Update to 3.7.6.Eric Bavier
* gnu/packages/maths.scm (petsc): Update to 3.7.6.
2017-08-07gnu: cubicle: Fix evaluation.Marius Bakke
* gnu/packages/maths.scm (cubicle)[native-inputs]: Retrieve WHICH from (gnu packages base).
2017-08-05gnu: Add cubicle.Julien Lepiller
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-03gnu: r-pracma: Update to 2.0.7.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.0.7.
2017-08-03gnu: vc: Limit to x86_64 and i686.Efraim Flashner
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-02gnu: hdf4: Update to 4.12.13.Thomas Danckaert
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-07-29gnu: Add z3.Theodoros Foradis
* gnu/packages/maths.scm (z3): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-07-26gnu: glpk: Update to 4.63.Efraim Flashner
* gnu/packages/maths.scm (glpk): Update to 4.63.
2017-07-25gnu: maxima: Ensure binutils are available at runtime.Kei Kebreau
* gnu/packages/maths.scm (maxima)[arguments]: Use modify-phases syntax. Modify 'post-install' phase.
2017-07-25Revert "gnu: maxima: Ensure gcc is available at runtime."Kei Kebreau
This reverts commit f2fa86cc82b5941bde63b666337eea59aa609e55. Commit 5ea8dbf0c906d51779ba0cf775ec9967f5f42382 fixes the underlying issue in GNU Common Lisp.
2017-07-20gnu: lapack: Fix hash of release 3.7.1Maxim Cournoyer
Apparently the release was modified (cleaned-up) in-place. An issue was opened at https://github.com/Reference-LAPACK/lapack-release/issues/4. * gnu/packages/maths.scm (lapack): Fix sha256 hash. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-07-08gnu: wxmaxima: Update to 17.05.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 17.05.0. [source]: Update URL and add file-name. [native-inputs]: Add autoconf, automake and gettext-minimal. [arguments]: Add 'autoconf' phase.
2017-07-07gnu: maxima: Ensure gcc is available at runtime.Kei Kebreau
* gnu/packages/maths.scm (maxima)[inputs]: Add gcc. [arguments]: Use modify-phases syntax. Add 'set-gcc-path' phase.
2017-06-30gnu: itpp: Use texlive-tiny and ghostscript.Ricardo Wurmus
* gnu/packages/maths.scm (itpp)[native-inputs]: Replace texlive-minimal with texlive-tiny; add ghostscript.
2017-06-30gnu: gnuplot: Use texlive-tiny.Ricardo Wurmus
* gnu/packages/maths.scm (gnuplot)[native-inputs]: Replace texlive-minimal with texlive-tiny.
2017-06-29gnu: lapack: Install libraries to PREFIX/lib, not PREFIX/lib64.Ludovic Courtès
This fixes a regression introduced in ef39a17717a10a7f406730258acfdb07934c7255, which would break python-scipy ("undefined reference to `zungqr_'"). * gnu/packages/maths.scm (lapack)[arguments]: Add "-DCMAKE_INSTALL_LIBDIR" to #:configure-flags.
2017-06-26gnu: scotch: Build in 64-bit mode on 64-bit machines.Ludovic Courtès
* gnu/packages/maths.scm (scotch)[arguments] <configure>: Add "INTSIZE64" CPP flag.
2017-06-26gnu: lapack: Build with LAPACKE_WITH_TMG=ON.Ludovic Courtès
* gnu/packages/maths.scm (lapack)[arguments]: Pass "-DLAPACKE_WITH_TMG=ON".
2017-06-26gnu: lapack: Update to 3.7.1.Ludovic Courtès
* gnu/packages/maths.scm (lapack): Update to 3.7.1.
2017-06-25gnu: hdf5: Update to 1.8.19.Thomas Danckaert
* gnu/packages/maths.scm (hdf5): Update to 1.8.19. [source]: Update uri.
2017-06-21gnu: gsl: Update to 2.4.Arun Isaac
* gnu/packages/maths.scm (gsl): Update to 2.4. [arguments]: Remove #:parallel-tests?.
2017-06-20gnu: Move contents of zip module into compression module.Arun Isaac
* gnu/packages/zip.scm (zip, unzip, zziplib, perl-zip): Move to... * gnu/packages/compression.scm: ...here. * gnu/packages/zip.scm: Delete file. * gnu/local.mk (GNU_SYSTEM_MODULES): Unregister deleted file. * po/packages/POTFILES.in: Unregister deleted file. * gnu/packages/{audio, avr, bioinformatics, busybox, cdrom, ci, compression, docbook, documentation, fonts, fpga, game-development, games, gl, gnome, gnuzilla, graphics, guile, haskell, image, java, kodi, ldc, libreoffice, markup, maths, mc, monitoring, music, php, pretty-print, python, scheme, smalltalk, statistics, synergy, tex, textutils, video, web-browsers, xml, zip}.scm, guix/build-system/{ant, font}.scm, guix/{download, packages}.scm: Adapt module import.
2017-06-19gnu: glpk: Update to 4.62.Efraim Flashner
* gnu/packages/maths.scm (glpk): Update to 4.62.
2017-06-06gnu: maxima: Update to 5.40.0.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.40.0.
2017-05-10gnu: Add ocaml4.01-gsl.Ben Woodcroft
* gnu/packages/maths.scm (ocaml4.01-gsl): New variable.
2017-04-30gnu: Add netcdf-fortran.Thomas Danckaert
* gnu/packages/maths.scm (netcdf-fortran): New variable.
2017-04-22gnu: gnuplot: Update to 5.0.6.Kei Kebreau
* gnu/packages/maths.scm (gnuplot): Update to 5.0.6.
2017-04-17gnu: Fix typos in descriptions.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (di)[description]: Likewise. * gnu/packages/bioinformatics.scm (r-annotate)[description]: Likewise. * gnu/packages/datastructures.scm (sparsehash)[description]: Likewise. * gnu/packages/dns.scm (knot)[description]: Likewise. * gnu/packages/emacs.scm (emacs-idle-highlight)[synopsis, description]: Likewise. * gnu/packages/gnome.scm (libpeas)[description]: Likewise. * gnu/packages/gtk.scm (python2-pygtk)[description]: Likewise. * gnu/packages/kde-frameworks.scm (kactivities)[description]: Fix typo. * gnu/packages/libevent.scm (perl-anyevent)[description]: Likewise. * gnu/packages/machine-learning.scm (ghmm)[description]: Likewise. * gnu/packages/mail.scm (mlmmj)[description]: Likewise. * gnu/packages/maths.scm (vc)[description]: Likewise. * gnu/packages/music.scm (gx-super-fuzz-lv2)[description]: Likewise. * gnu/packages/networking.scm (nload)[description]: Likewise. * gnu/packages/python.scm (python-execnet)[description]: Likewise. * gnu/packages/terminals.scm (tilda)[description]: Likewise. * gnu/packages/python.scm (python-execnet, python-tables) (python2-coverage-test-runner, python2-rope)[description]: Likewise.
2017-04-08gnu: octave: Build with gl2ps support.Arun Isaac
* gnu/packages/maths.scm (octave)[inputs]: Add gl2ps. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-07gnu: flann: Move .mex file to a separate "octave" output.Ludovic Courtès
That way the closure of flann:out is down from 1 GiB to 290 MiB. * gnu/packages/maths.scm (flann)[outputs]: New field. [arguments]: Add 'set-octave-directory' phase.
2017-04-06gnu: armadillo: Change license to ASL 2.0.Ricardo Wurmus
Armadillo versions 7.800 and onwards are licensed under the Apache License 2.0. * gnu/packages/maths.scm (armadillo)[license]: Change to ASL 2.0.
2017-04-06gnu: Remove armadillo-for-rcpparmadillo.Ricardo Wurmus
This package is no longer useful, because upstream does not keep the tarballs of older releases. We use the bundled armadillo sources in the r-rccparmadillo package instead. * gnu/packages/maths.scm (armadillo-for-rcpparmadillo): Remove variable.
2017-04-06gnu: armadillo: Update to 7.800.2.Ricardo Wurmus
* gnu/packages/maths.scm (armadillo): Update to 7.800.2.
2017-04-06gnu: r-pracma: Update to 2.0.4.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.0.4.
2017-03-30Merge branch 'master' into core-updatesMarius Bakke
Most conflicts are from 6fd52309b8f52c9bb59fccffac53e029ce94b698.
2017-03-30gnu: Use HTTPS for almost all gnu.org HOME-PAGEs.Tobias Geerinckx-Rice
All HTTP gnu.org (and supported subdomain) HOME-PAGEs changed to HTTPS.
2017-03-28gnu: gsl: Disable tests on aarch64-linux.Efraim Flashner
* gnu/packages/maths.scm (gsl)[arguments]: Do not run the test suite on aarch64-linux. [home-page]: Use https.
2017-03-27Merge branch 'master' into core-updatesLeo Famulari
2017-03-27gnu: gnuplot: Enable tikz backend.Danny Milosavljevic
* gnu/packages/maths.scm (gnuplot)[inputs]: Add lua.
2017-03-23gnu: scotch: Build with flex-2.6.1.Efraim Flashner
* gnu/packages/maths.scm (scotch)[native-inputs]: Use flex-2.6.1 and not flex.
2017-03-21gnu: openblas: Add support for aarch64.Efraim Flashner
* gnu/packages/maths.scm (openblas)[arguments]: Mark aarch64 as substitutable, build for target ARMv8.
2017-03-18gnu: Add maxflow.John Darrington
* gnu/packages/maths.scm (maxflow): New variable.
2017-03-18gnu: Add itpp.John Darrington
* gnu/packages/maths.scm (itpp): New variable.
2017-03-17gnu: Add ocaml-gsl.Ben Woodcroft
* gnu/packages/maths.scm (ocaml-gsl): New variable.
2017-03-15gnu: units: Update to 2.14.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (units): Update to 2.14.
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