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2021-06-25gnu: suitesparse: Update to 5.10.1.Ludovic Courtès
* gnu/packages/maths.scm (suitesparse): Update to 5.10.1.
2021-06-25gnu: suitesparse: Link against OpenBLAS rather than LAPACK.Ludovic Courtès
* gnu/packages/maths.scm (suitesparse)[inputs]: Replace LAPACK with OPENBLAS. [arguments]: Add "BLAS"and "LAPACK" to #:make-flags.
2021-06-24gnu: maxima: Update to 5.45.1.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.45.1. [home-page]: Follow redirect.
2021-06-22gnu: petsc: Link against OpenBLAS rather than LAPACK.Ludovic Courtès
OpenBLAS performs better than LAPACK, the reference implementation. This is also consistent with the choice of BLAS/LAPACK implementations made in most other packages. * gnu/packages/maths.scm (petsc)[inputs]: Replace LAPACK by OPENBLAS. [arguments]: Pass "--with-openblas=1".
2021-06-20gnu: why3: Update to 1.3.3.Julien Lepiller
* gnu/packages/maths.scm (why3): Update to 1.3.3. [arguments]: Adjust for newer ocaml-num.
2021-06-14gnu: wxmaxima: Update to 21.05.2.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 21.05.2.
2021-06-14gnu: maxima: Update to 5.45.0.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.45.0.
2021-06-14gnu: Rename qtbase to qtbase-5.Maxim Cournoyer
This change was automated via the following command: $ git ls-files | xargs sed -i 's/,qtbase)/,qtbase-5)/g' $ git ls-files | xargs sed -i 's/inherit qtbase)/inherit qtbase-5)/g' $ git ls-files | xargs sed -i 's/package-version qtbase)/package-version qtbase-5)/g' $ git checkout etc # to clear some spurious changes This is done so the qtbase package can be upgraded to version 6 in the following commit.
2021-06-12gnu: qalculate-gtk: Update to 3.19.0.Jack Hill
* gnu/packages/maths.scm (qalculate-gtk): Update to 3.19.0. [phases]: Remove 'add-pot-file. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-12gnu: libqalculate: Update to 3.19.0.Jack Hill
* gnu/packages/maths (libqalculate): Update to 3.19.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-06-02gnu: Add frama-c.Julien Lepiller
* gnu/packages/maths.scm (frama-c): New variable.
2021-06-02gnu: Add why3.Julien Lepiller
* gnu/packages/maths.scm (why3): New variable.
2021-05-28gnu: ipopt: Update to 3.13.4Eric Brown
* gnu/packages/maths.scm (ipopt): Update to 3.13.4, update URL. [license]: Change to LICENSE:EPL2.0. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-28gnu: Add cbc.Eric Brown
* gnu/packages/maths.scm (cbc): New variable. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2021-05-25gnu: qhull: Build position independent.Efraim Flashner
* gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to build code position independent.
2021-05-25gnu: qhull: Link binaries to shared library.Efraim Flashner
This drops the package size by nearly 60%. * gnu/packages/maths.scm (qhull)[arguments]: Add configure-flag to link binaries to shared library.
2021-05-24gnu: HYPRE: Update source and home page URLs.Marius Bakke
* gnu/packages/maths.scm (hypre)[source]: Change to new repository home. [home-page]: Follow redirect.
2021-05-23gnu: Fix erroneous uses of 'package/inherit'.Marius Bakke
These packages use a different source/version from the inherited package, and thus should not inherit replacements. * gnu/packages/check.scm (googletest-1.8, python-pytest-runner-2): Use record inheritance instead of PACKAGE/INHERIT. * gnu/packages/crates-io.scm (rust-bindgen-0.49, rust-bytes-0.4, rust-colored-1.9.1, rust-difference-1, rust-docopt-0.8, rust-html5ever-0.23, rust-http-0.1, rust-http-body-0.1, rust-loom-0.2, rust-loom-0.1, rust-pulldown-cmark-0.0.8, rust-ring-0.13, rust-rustls-0.12, rust-sct-0.3, rust-term-0.2, rust-untrusted-0.6, rust-webpki-0.18, rust-webpki-roots-0.17, rust-webpki-roots-0.14): Likewise. * gnu/packages/emacs.scm (emacs-next, emacs-next-pgtk, guile-emacs): Likewise. * gnu/packages/guile.scm (guile-2.2.4): Likewise. * gnu/packages/maths.scm (hdf5-1.10, hdf5-1.12): Likewise. * gnu/packages/protobuf.scm (protobuf-3.6, protobuf-3.5, python-protobuf-3.6): Likewise. * gnu/packages/python-web.scm (python2-html2text): Likewise. * gnu/packages/python-xyz.scm (python-pygments/fixed, python2-numpy, python2-urwid, python2-markdown, python2-fonttools): Likewise. * gnu/packages/racket.scm (racket): Likewise. * gnu/packages/sequoia.scm (sequoia4pEp): Likewise.
2021-05-21gnu: Add numdiff.Paul A. Patience
* gnu/packages/maths.scm (numdiff): New variable.
2021-05-18gnu: hdf5: Fix invalid regex range.Marius Bakke
* gnu/packages/maths.scm (hdf5-1.8)[arguments]: Use [a-zA-Z] instead of [a-Z] as range in regular expression.
2021-05-18gnu: qhull: Update to 2020.2.Marius Bakke
* gnu/packages/maths.scm (qhull): Update to 2020.2.
2021-05-15gnu: arpack-ng@3.3: Don't use unstable source tarball.Marius Bakke
* gnu/packages/maths.scm (arpack-ng-3.3.0)[name, home-page]: Remove. [source]: Switch to GIT-FETCH. Inline uses of NAME and HOME-PAGE.
2021-05-15gnu: arpack-ng: Update to 3.8.0.Marius Bakke
* gnu/packages/maths.scm (arpack-ng): Update to 3.8.0. [native-inputs]: Add PKG-CONFIG. [inputs]: Add EIGEN.
2021-05-06gnu: Add cglm.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (cglm): New public variable.
2021-05-05gnu: Add libcerf.Vinicius Monego
* gnu/packages/maths.scm (libcerf): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-05-03gnu: octave, octave-cli: Explain difference.Konrad Hinsen
* gnu/packages/maths.scm (octave-cli, octave): Extended synopsis. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-29gnu: xaos: Update to 4.2.1.Kei Kebreau
* gnu/packages/maths.scm (xaos): Update to 4.2.1. [arguments]: Patch call to "lrelease" in XaoS.pro.
2021-04-21gnu: wxmaxima: Update to 21.04.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 21.04.0.
2021-04-12gnu: blis: Add deprecated aliases.Ludovic Courtès
Add deprecated aliases for packages removed in the parent commit. * gnu/packages/maths.scm (blis-sandybridge, blis-haswell, blis-knl): New variables.
2021-04-12gnu: blis: Update to 0.8.1.Philip McGrath
* gnu/packages/maths.scm (make-blis): Remove internal function. Inline into ... (bliss): ... this variable. Update to 0.8.1. [native-inputs]: Add "python" and "perl". [arguments]: Adjust 'configure' phase to take advantage of new support for "configuration families" with runtime hardware detection. Select configuration automatically based on target systems, and allow "--blis-config=" in #:configure-flags to override the default. When building for x86_64, include all supported microarchetecture specializations. Add "--enable-verbose-make" configure flag for better build logs. Stop ignoring other flags from #:configure-flags. Remove explicit #:substitutable? argument: the package is now always substitutable. Add (srfi srfi-1) to #:modules. (blis/x86_64): Remove internal macro. (blis-sandybridge): Remove package: included in 'blis'. (blis-haswell): Remove package: included in 'blis'. (blis-knl): Remove package: included in 'blis'. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-04-09gnu: python-sip: Update to 5.5.0. Add python-sip-4Brendan Tildesley
* gnu/packages/qt.scm (python-sip): Update to 5.5.0. (python-sip-4): New variable. Rename the old python-sip to python-sip-4. (python2-sip): Inherit from python-sip-4. * gnu/packages/maths.scm (veusz)[native-inputs]: Use python-sip-4. * gnu/packages/pdf.scm (python-poppler-qt5): Use python-sip-4. * gnu/packages/geo.scm (qgis)[arguments]: Fix build for python-sip@5.
2021-04-06gnu: Add scotch and pt-scotch with shared librariesFranck Pérignon
* gnu/packages/maths.scm (scotch-shared, pt-scotch-shared): New variables. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-04-05gnu: suitesparse: Update to 5.9.0.Felix Gruber
* gnu/packages/maths.scm (suitesparse): Update to 5.9.0. [arguments]: Use cc-for-target instead of hard-coding gcc. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-03-29gnu: metis: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/maths.scm (metis)[properties]: New field.
2021-03-13gnu: wxmaxima: Update to 21.02.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 21.02.0.
2021-03-02gnu: octave: Update to 6.2.0.Efraim Flashner
* gnu/packages/maths.scm (octave): Update to 6.2.0. [source]: Download tar.xz tarball. [native-inputs]: Remove lzip.
2021-02-28gnu: slepc: Use HTTPS home page URI.Nicolas Goaziou
* gnu/packages/maths.scm (slepc)[home-page]: Use HTTPS URI.
2021-02-28gnu: elpa: Use HTTPS home page URI.Nicolas Goaziou
* gnu/packages/maths.scm (elpa)[home-page]: Use HTTPS URI.
2021-02-21gnu: Add HDF5 1.12.0.Gerd Heber
* gnu/packages/maths.scm (hdf5-1.12): New variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-09gnu: wxmaxima: Update to 21.01.0.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 21.01.0. [inputs]: Remove libomp.
2021-02-08gnu: hdf5: Update to 1.8.22.Eric Bavier
Fixes CVE-2018-14033, CVE-2018-11206, CVE-2018-13870, CVE-2018-13869, and CVE-2018-17435 * gnu/packages/maths.scm (hdf5-1.8): Update to 1.8.22. * gnu/packages/patches/hdf5-1.8-mpi-deprecations.patch: Delete upstreamed patch. * gnu/local/mk (dist_patch_DATA): Remove it.
2021-01-17gnu: wxmaxima: Update to 20.12.2.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 20.12.2. [arguments]: Remove #:test-target and disable tests. Remove 'pre-check phase. [native-inputs]: Remove xorg-server-for-tests. [inputs]: Add libomp.
2021-01-17gnu: gnuplot: Update to 5.4.1.Kei Kebreau
* gnu/packages/maths.scm (gnuplot): Update to 5.4.1. [arguments]: Set GNUTERM in #:make-flags.
2021-01-04gnu: suitesparse: Install libraries into /lib.Efraim Flashner
* gnu/packages/maths.scm (suitesparse)[arguments]: Add to configure-flags to install programs built with cmake to use 'lib', not 'lib64.'
2020-12-31gnu: matio: Update to 1.5.19.Vincent Legoll
* gnu/packages/maths.scm (matio): Update to 1.5.19. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-12-22gnu: octave, octave-cli: Update to 6.1.0.Greg Hogan
* gnu/packages/maths.scm (octave, octave-cli): Update to 6.1.0. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-17gnu: glpk: Don't build static library.Efraim Flashner
* gnu/packages/maths.scm (glpk)[arguments]: Add configure-flag to skip static library.
2020-12-17gnu: glpk: Update to 5.0.Efraim Flashner
* gnu/packages/maths.scm (glpk): Update to 5.0. (glpk-4.65): New variable. * gnu/packages/algebra.scm (giac)[inputs]: Replace glpk with glpk-4.
2020-12-13gnu: veusz: Update to 3.3.1.Vinicius Monego
* gnu/packages/maths.scm (veusz): Update to 3.3.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2020-12-12gnu: sleef: Update to 3.5.1.Vinicius Monego
* gnu/packages/maths.scm (sleef): Update to 3.5.1. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
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