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2022-02-01gnu: openblas: Fix building on riscv64-linux.Efraim Flashner
* gnu/packages/maths.scm (openblas)[arguments]: Adjust make-flags on riscv64-linux to target the correct architecture when building for riscv64-linux.
2022-01-28gnu: Properly deprecate texlive-generic-ulem.Nicolas Goaziou
* gnu/packages/python-xyz.scm (python-nbconvert): * gnu/packages/maths.scm (hypre): Apply deprecation. * gnu/packages/tex.scm (texlive-generic-ulem): Fix typo in deprecation command.
2022-01-28gnu: Remove occurrences of deprecated texlive-latex-capt-of.Nicolas Goaziou
* gnu/packages/maths.scm (hypre): * gnu/packages/python-xyz.scm (python-numpy-documentation): (python-ipython-documentation): Use texlive-capt-of instead of texlive-latex-capt-of.
2022-01-22gnu: jacal: Update to 1c7.Morgan Smith
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Delete this. * gnu/packages/maths.scm (jacal)[source]: Delete this patch. [version]: Update to 1c7. Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2022-01-20gnu: dune-pdelab: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-pdelab): Update to 2.7.1. [version]: Use `git-version` to compute the version string. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-functions: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-functions): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-typetree: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-typetree): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-subgrid: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-subgrid): Update to 2.7.1. [version]: Use `git-version` to compute the version string. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-alugrid: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-alugrid): Update to 2.7.1. [version]: Use `git-version` to compute the version string. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-localfunctions: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-localfunctions): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-istl: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1. [arguments]: Parallelize build-tests phase. [source](patches) Remove patch that is no longer needed. * gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove above patch. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-grid: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-grid): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-uggrid: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-uggrid): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-geometry: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-geometry): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: dune-common: Update to 2.7.1.Felix Gruber
* gnu/packages/maths.scm (dune-common): Update to 2.7.1. [arguments]: Parallelize build-tests phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20gnu: Modernize add-openmpi-to-dune-packageFelix Gruber
* gnu/packages/maths.scm (add-openmpi-to-dune-package): Use modify-inputs. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-12gnu: Remove python2-cvxopt.Felix Gruber
* gnu/packages/maths.scm (python2-cvxopt): Remove variable. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-12gnu: python-cvxopt: Update to 1.2.7.Felix Gruber
* gnu/packages/maths.scm (python-cvxopt): Update to 1.2.7. Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-11gnu: ceres: Update to 2.0.0.Felix Gruber
* gnu/packages/maths.scm (ceres): Update to 2.0.0. [inputs]: Use simplified format. (ceres-solver-benchmarks)[phases]: Add schur_eliminator_benchmark. Replace autodiff_cost_function_benchmark with new autodiff_benchmarks. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-11gnu: dealii: Update to 9.3.2.Felix Gruber
* gnu/packages/maths.scm (dealii): Update to 9.3.2. [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and dealii-fix-sundials.patch. [inputs]: Use simplified format. [native-inputs]: Use simplified format. * gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch: New file. * gnu/packages/patches/dealii-fix-sundials.patch: New file. * gnu/local.mk: Add new patch files. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-01-01gnu: gsl: Add 'tunable?' property.Ludovic Courtès
* gnu/packages/maths.scm (gsl)[properties]: New field.
2022-01-01gnu: Add ceres-solver-benchmarks.Ludovic Courtès
* gnu/packages/maths.scm (ceres-solver-benchmarks): New variable.
2022-01-01gnu: ceres-solver: Mark as tunable.Ludovic Courtès
* gnu/packages/maths.scm (ceres)[properties]: New field.
2021-12-30gnu: Capitalize beginning of synopsis.Vagrant Cascadian
* gnu/packages/admin.scm (hungrycat)[synopsis]: Captalize. * gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise. * gnu/packages/cpp.scm (clipper)[synopsis]: Likewise. * gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3, rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2, rust-takeable-option-0.4, rust-ttf-parser-0.12)[synopsis]: Likewise. * gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise. * gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise. * gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise. * gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise. * gnu/packages/maths.scm (coda)[synopsis]: Likewise. * gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise. * gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-markuppy, python-febelfin-coda)[synopsis]: Likewise. * gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise. * gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
2021-12-30gnu: Remove leading article from synopsis.Vagrant Cascadian
* gnu/packages/admin.scm (hungrycat)[synopsis]: Remove leading article. * gnu/packages/cobol.scm (gnucobol)[synopsis]: Likewise. * gnu/packages/cpp.scm (clipper)[synopsis]: Likewise. * gnu/packages/crates-graphics.scm (rust-piston-texture-0.8)[synopsis]: Likewise. * gnu/packages/crates-io.scm (rust-alloc-stdlib-0.2, rust-atom-0.3, rust-oorandom-11.1, rust-r2d2, rust-scheduled-thread-pool-0.2, rust-takeable-option-0.4, rust-ttf-parser-0.12, rust-svd-parser-0.9)[synopsis]: Likewise. * gnu/packages/games.scm (roguebox-adventures)[synopsis]: Likewise. * gnu/packages/gl.scm (libepoxy)[synopsis]: Likewise. * gnu/packages/gnome-xyz.scm (arc-theme)[synopsis]: Likewise. * gnu/packages/haskell-xyz.scm (ghc-cborg-json, ghc-rio)[synopsis]: Likewise. * gnu/packages/installers.scm (mingw-path)[synopsis]: Likewise. * gnu/packages/lisp-xyz.scm (sbcl-cl-utilities)[synopsis]: Likewise. * gnu/packages/lisp.scm (gcl, clisp)[synopsis]: Likewise. * gnu/packages/maths.scm (coda)[synopsis]: Likewise. * gnu/packages/ocaml.scm (ocaml4.07-ppx-sexp-message)[synopsis]: Likewise. * gnu/packages/perl6.scm (perl6-json)[synopsis]: Likewise. * gnu/packages/python-xyz.scm (python-pari-jupyter, python-markuppy, python-febelfin-coda)[synopsis]: Likewise. * gnu/packages/scheme.scm (mit-scheme)[synopsis]: Likewise. * gnu/packages/statistics.scm (r-magrittr)[synopsis]: Likewise. * gnu/packages/terminals.scm (sakura)[synopsis]: Likewise.
2021-12-26gnu: Add feedgnuplot.Marius Bakke
* gnu/packages/maths.scm (feedgnuplot): New public variable.
2021-12-22gnu: frama-c: Update to 24.0.Julien Lepiller
* gnu/packages/maths.scm (frama-c): Update to 24.0.
2021-12-19gnu: cglm: Use meson-build-system.Liliana Marie Prikler
The CMake-based builds fail to correctly encode the version, leading to build failures in dependencies. See <https://bugs.gnu.org/52663>. * gnu/packages/maths.scm (cglm)[build-system]: Change to meson-build-system. [arguments]: Adjust #:configure-flags accordingly.
2021-12-19gnu: cglm: Update to 0.8.4.Liliana Marie Prikler
* gnu/packages/maths.scm (cglm): Update to 0.8.4.
2021-12-13gnu: Further simplify package inputs.Ludovic Courtès
This is the result of running: ./pre-inst-env guix style --input-simplification=safe and manually undoing changes on a dozen of packages to reduce rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
2021-12-13gnu: Simplify package inputs.Ludovic Courtès
This commit was obtained by running: ./pre-inst-env guix style without any additional argument.
2021-12-12gnu: sundials: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/maths.scm (sundials)[properties]: New field.
2021-12-12gnu: sundials: Build with '-fcommon'.Ludovic Courtès
* gnu/packages/maths.scm (sundials)[arguments]: Pass "-DCMAKE_C_FLAGS".
2021-12-09gnu: Add gsl-static.Efraim Flashner
* gnu/packages/maths.scm (gsl-static): New variable.
2021-12-08gnu: python-slepc4py: Update to 3.16.1.Ludovic Courtès
This is a followup 5b4d1e57b6d4931f6ee2a50abf84222fe015d045. * gnu/packages/maths.scm (slepc-openmpi)[inputs]: Move ARPACK-NG-OPENMPI to... [propagated-inputs]: ... here. (python-slepc4py): Update to 3.16.1.
2021-12-08gnu: python-petsc4py: Update to 3.16.1.Ludovic Courtès
This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f. * gnu/packages/maths.scm (python-petsc4py): Update to 3.16.1.
2021-12-08gnu: mumps: Allow compilation with GCC 10.Ludovic Courtès
Following the suggestion at <https://community.freefem.org/t/compline-on-macos-10-15-6/543>. * gnu/packages/maths.scm (mumps)[arguments]: In 'configure' phase, add '-fallow-argument-mismatch' to 'OPTF'.
2021-12-05Merge remote-tracking branch 'origin/master' into core-updates-frozenRicardo Wurmus
2021-12-05gnu: clapack: Pass -fcommon to compiler.Ricardo Wurmus
* gnu/packages/maths.scm (clapack)[arguments]: Set CFLAGS.
2021-12-05gnu: clapack: Remove trailing #T.Ricardo Wurmus
* gnu/packages/maths.scm (clapack)[arguments]: Remove trailing #T from build phases.
2021-12-05gnu: Adjust for python-build-system behavior change.Marius Bakke
Commit cb72f9a773e0931ee3758c851d96007ded034e4c changed the semantics of SITE-PACKAGES, but did not adjust all callers. * gnu/packages/bioinformatics.scm (python-pyvcf)[arguments]: Adjust for missing trailing slash. * gnu/packages/maths.scm (nomad-optimizer)[arguments]: Likewise. * gnu/packages/patchutils.scm (patchwork)[arguments]: Likewise.
2021-12-01gnu: petsc-{complex,openmpi,complex-openmpi}: Use gexps.Ludovic Courtès
This is a followup to 07ac13a26a0d7c8319afb42c55fc2116ec44668f, which omitted to switch to gexps in packages that inherit from 'petsc'. Reported by Mathieu Othacehe <othacehe@gnu.org>. * gnu/packages/maths.scm (petsc-complex)[arguments]: Use gexps. (petsc-openmpi)[arguments]: Likewise. (petsc-complex-openmpi)[arguments]: Likewise.
2021-12-01gnu: scalapack: Update to 2.1.0.Ludovic Courtès
* gnu/packages/maths.scm (scalapack): Update to 2.1.0. [source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add "scalapack-gcc-10-compilation.patch". [arguments]: Add 'skip-faulty-test' phase. * gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove. * gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-11-29gnu: slepc: Update to 3.16.1.Ludovic Courtès
* gnu/packages/maths.scm (slepc): Update to 3.16.1. [native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH. [properties]: New field.
2021-11-29gnu: petsc: Update to 3.16.1.Ludovic Courtès
* gnu/packages/maths.scm (petsc): Update to 3.16.1. [native-inputs]: Use PYTHON instead of PYTHON-2. Add WHICH. [arguments]: Rewrite using gexps. Pass '--with-openblas-dir'. In 'configure' phase, modify "config/example_template.py".
2021-11-26gnu: ceres-solver: Install library to lib/ instead of lib64/.Ludovic Courtès
* gnu/packages/maths.scm (ceres)[arguments]: In 'set-library-directory' phase, modify the top-level 'CMakeLists.txt'.
2021-11-25gnu: aris: Build with '-O2'.Ludovic Courtès
* gnu/packages/maths.scm (aris)[arguments]: Pass "-O2 -g".
2021-11-22gnu: opencascade-occt: Use TBB 2020.Ricardo Wurmus
* gnu/packages/maths.scm (opencascade-occt)[inputs]: Replace tbb with tbb-2020.
2021-11-17Merge branch 'master' into core-updates-frozenLudovic Courtès
2021-11-16gnu: Add julia-sundials-jullJean-Baptiste Volatier
* gnu/packages/julia-jll.scm (julia-sundials-jll): New variable. * gnu/packages/maths.scm (sundials-julia): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
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