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2018-11-23gnu: python-slepc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: python-petsc4py: Update to 3.10.0.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): Update to 3.10.0. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: slepc: Update to 3.10.1.Paul Garlick
* gnu/packages/maths.scm (slepc): Update to 3.10.1. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-23gnu: petsc: Update to 3.10.2Paul Garlick
* gnu/packages/maths.scm (petsc): Update to 3.10.2. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2018-11-20gnu: z3: Update to 4.8.1.Marius Bakke
* gnu/packages/maths.scm (z3): Update to 4.8.1.
2018-11-20gnu: z3: Fetch source using git.Marius Bakke
* gnu/packages/maths.scm (z3)[source]: Change to GIT-FETCH.
2018-11-18gnu: ocaml: Update to 4.7.0.Julien Lepiller
Update ocaml to the latest version and fixes dependent packages by updating them or by adding new inputs, such as ocaml-num and ocamlbuild, that were removed from the core ocaml package. Rename packages that cannot be built with the new compiler with an ocaml4.02 prefix. Add ocaml4.02 dependencies. * gnu/packages/ocaml.scm (ocaml): Update to 4.7.0. (ocaml-4.02, ocamlbuild, camlp4-4.02, ocaml-num, ocaml4.02-menhir) (ocaml4.02-lablgtk, ocaml4.02-findlib, ocaml4.02-ounit, ocaml4.02-camlzip) (ocaml4.02-ocamlmod, ocaml4.02-zarith, ocaml4.02-qcheck, ocaml4.02-qtest) (ocaml4.02-stringext, ocaml4.02-bisect, dune, ocaml-migrate-parsetree) (ocaml-ppx-tools-versioned, ocaml-ppx-tools-versioned) (ocaml4.02-bitstring, ocaml4.02-result, ocaml4.02-topkg, ocaml4.02-rresult) (ocaml4.02-sqlite3, ocaml4.02-csv, ocaml4.02-mtime, ocaml4.02-cmdliner) (ocaml4.02-fmt, ocaml4.02-astring, ocaml4.02-alcotest, ocaml4.02-ppx-tools) (ocaml4.02-react, ocaml4.02-ssl, ocaml4.02-lwt, ocaml-lwt-log) (ocaml4.02-lwt-log, ocaml4.02-logs, ocaml4.02-fpath, ocaml4.02-bos) (ocaml4.02-xmlm, ocaml4.02-ulex, ocaml4.02-uchar, ocaml4.02-uutf) (ocaml4.02-jsonm, ocaml4.02-ocurl, ocaml4.02-base64, ocaml4.02-omake) (ocaml4.02-batteries, ocaml4.02-pcre, ocaml4.02-oasis) (ocaml4.02-js-build-tools, ocaml4.02-cppo, ocaml-seq, ocaml4.02-seq) (ocaml4.02-re, ocaml4.02-ocplib-endian, ocaml4.02-easy-format) (ocaml4.02-piqilib, ocaml4.02-uuidm, ocaml4.02-graph, ocaml4.02-piqi) (ocaml4.02-camomile, ocaml4.02-zed, ocaml4.02-lambda-term): New packages. (opam): Update to 2.0.0. (camlp4): Update to 4.07+1. (camlp5): Update to 7.06. (hevea): Update to 2.32. (coq)[inputs]: Add ocaml-num. (emacs-tuareg): Update to 2.2.0. (ocaml-menhir)[native-inputs]: Add ocamlbuild. (ocaml-lablgtk): Update to 2.18.6. (unison)[inputs]: Use ocaml-4.02. (ocaml-findlib): Update to 1.8.0. (ocaml-ounit)[native-inputs]: Add ocamlbuild. (ocamlmod): Update to 0.0.9. (ocaml-frontc)[arguments]: Use ocaml-4.02. (ocaml-qcheck)[native-inputs]: Add ocamlbuild. (ocaml-qtest)[native-inputs]: Remove ocaml-findlib and add ocamlbuild. (ocaml-stringext)[native-inputs]: Add ocamlbuild. (ocaml-bisect): Update to 1.3.1. (ocaml4.01-bisect): Downgrade to 1.3. (ocaml-bitstring): Update to 3.1.0. (ocaml-topkg)[native-inputs]: Add ocamlbuild. (ocaml-rresult)[native-inputs]: Add ocamlbuild. (ocaml-sqlite3)[native-inputs]: Add ocamlbuild. (ocaml-csv)[native-inputs]: Add ocamlbuild. (ocaml-mtime)[native-inputs]: Add ocamlbuild. (ocaml-cmdliner)[native-inputs]: Add ocamlbuild. (ocaml-fmt)[native-inputs]: Add ocamlbuild. (ocaml-astring)[native-inputs]: Add ocamlbuild. (ocaml-alcotest)[native-inputs]: Add ocamlbuild. (ocaml-ppx-tools)[native-inputs]: Add ocamlbuild. (ocaml-react)[native-inputs]: Add ocamlbuild. (ocaml-ssl)[arguments]: Return #t in phases. (ocaml-lwt): Update to 4.1.0. (ocaml-logs)[native-inputs]: Add ocamlbuild. (ocaml-fpath)[native-inputs]: Add ocamlbuild. (ocaml-bos)[native-inputs]: Add ocamlbuild. (ocaml-xmlm): Update to 1.3.0. (ocaml-ulex): Update to 1.2.0. (ocaml-uchar)[native-inputs]: Add ocamlbuild. (ocaml-uutf): Update to 1.0.1. (ocaml-jsonm): Update to 1.0.1. (ocaml-ocurl): Update to 0.8.2. (ocaml-base64)[native-inputs]: Add ocamlbuild. (ocamlify)[native-inputs]: Use ocaml-4.02. (omake): Update to 0.10.3. (ocaml-batteries): Update to 2.9.0. (ocaml-pcre)[native-inputs]: Add ocamlbuild. (ocaml-expect): Update 0.0.6. (ocaml4.02-fileutils): Update to 0.5.3. (ocaml-oasis): Update 0.4.11. (ocaml-js-build-tools)[native-inputs]: Add ocamlbuild. (ocaml-bin-prot): Rename to ocaml4.02-bin-prot. (ocaml-fieldslib): Rename to ocaml4.02-fieldslib. (ocaml-ppx-core): Rename to ocaml4.02-ppx-core. (ocaml-ppx-optcomp): Rename to ocaml4.02-ppx-optcomp. (ocaml-ppx-driver): Rename to ocaml4.02-ppx-driver. (ocaml-cppo): Update to 1.6.5. (ocaml-ppx-deriving): Rename to ocaml4.02-ppx-deriving. (ocaml-ppx-type-conv): Rename to ocaml4.02-ppx-type-conv. (ocaml-ppx-inline-test): Rename to ocaml4.02-ppx-inline-test. (ocaml-ppx-bench): Rename to ocaml4.02-ppx-bench. (ocaml-ppx-compare): Rename to ocaml4.02-ppx-compare. (ocaml-sexplib): Rename to ocaml4.02-sexplib. (ocaml-typerep): Rename to ocaml4.02-typerep. (ocaml-variantslib): Rename to ocaml4.02-variantslib. (ocaml-ppx-sexp-conv): Rename to ocaml4.02-ppx-sexp-conv. (ocaml-ppx-variants-conv): Rename to ocaml4.02-ppx-variants-conv. (ocaml-ppx-here): Rename to ocaml4.02-ppx-here. (ocaml-ppx-assert): Rename to ocaml4.02-ppx-assert. (ocaml-ppx-enumerate): Rename to ocaml4.02-ppx-enumerate. (ocaml-ppx-let): Rename to ocaml4.02-ppx-let. (ocaml-ppx-typerep-conv): Rename to ocaml4.02-ppx-typerep-conv. (ocaml-ppx-sexp-value): Rename to ocaml4.02-ppx-sexp-value. (ocaml-ppx-pipebang): Rename to ocaml4.02-ppx-pipebang. (ocaml-ppx-bin-prot): Rename to ocaml4.02-ppx-bin-prot. (ocaml-ppx-fail): Rename to ocaml4.02-ppx-fail. (ocaml-ppx-custom-printf): Rename to ocaml4.02-ppx-custom-printf. (ocaml-ppx-sexp-message): Rename to ocaml4.02-ppx-sexp-message. (ocaml-ppx-fields-conv): Rename to ocaml4.02-ppx-fields-conv. (ocaml-re): Update to 1.8.0. (ocaml-ppx-expect): Rename to ocaml4.02-ppx-expect. (ocaml-ppx-jane): Rename to ocaml4.02-ppx-jane. (ocaml-core-kernel): Rename to ocaml4.02-core-kernel. (ocaml-async-kernel): Rename to ocaml4.02-async-kernel. (ocaml-async-rpc-kernel): Rename to ocaml4.02-async-rpc-kernel. (ocaml-core): Rename to ocaml4.02-core. (ocaml-async-unix): Rename to ocaml4.02-async-unix. (ocaml-async-extra): Rename to ocaml4.02-async-extra. (ocaml-async): Rename to ocaml4.02-async. (ocaml-ocplib-endian)[native-inputs]: Update to 1.0. (ocaml-cstruct): Rename to ocaml4.02-cstruct. (ocaml-hex): Rename to ocaml4.02-hex. (ocaml-ezjsonm): Rename to ocaml4.02-ezjsonm. (ocaml-uri): Rename to ocaml4.02-uri. (optcomp): Use ocaml-4.02. (ocaml-piqilib): Update to 0.6.14. (ocaml-uuidm)[native-inputs]: Add ocamlbuild. (ocaml-graph): Update to 1.8.8. (ocaml-piqi): Update to 0.7.6. (bap): Update to 1.3.0. (ocaml-camomile): Update to 1.0.1. (ocaml-jbuilder): Use ocaml-4.02. (ocaml-lambda-term): Update to 1.13. (ocaml-utop): Update to 2.2.0. (ocaml-integers)[native-inputs]: Add ocamlbuild. (ocaml-ctypes): Update to 0.14.0. (ocaml-ocb-stubblr)[native-inputs]: Add ocamlbuild. (ocaml-tsdl)[native-inputs]: Add ocamlbuild. * gnu/packages/machine-learning.scm (ocaml-mcl): Use ocaml-4.02. * gnu/packages/maths.scm (cubicle): Update to 1.1.2. * gnu/packages/patches/ocaml-bisect-fix-camlp4-in-another-directory.patch: Update patch. * guix/build-system/ocaml.scm: (default-ocaml4.02, default-ocaml4.02-findlib) (package-with-ocaml4.02, strip-ocaml4.02-variant): New variables.
2018-11-18gnu: maxima: Fix tests on i686 and x86_64.Kei Kebreau
* gnu/packages/maths.scm (maxima)[arguments]: Replace check phase.
2018-11-14gnu: Add python-slepc4py.Paul Garlick
* gnu/packages/maths.scm (python-slepc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-14gnu: Add python-petsc4py.Paul Garlick
* gnu/packages/maths.scm (python-petsc4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-11-09gnu: wxmaxima: Update to 18.10.1.Kei Kebreau
* gnu/packages/maths.scm (wxmaxima): Update to 18.10.1. [source]: Update URL and remove patch. * gnu/packages/patches/wxmaxima-do-not-use-old-gnuplot-parameters.patch: Remove file. * gnu/local.mk (dist_patch_DATA): Remove patch.
2018-11-07gnu: Add hdf5-1.10.Ricardo Wurmus
* gnu/packages/maths.scm (hdf5-1.10): New variable.
2018-11-05gnu: glm: Update to 0.9.9.3.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.3.
2018-10-30gnu: r-pracma: Update to 2.1.8.Ricardo Wurmus
* gnu/packages/maths.scm (r-pracma): Update to 2.1.8. [propagated-inputs]: Remove r-quadprog.
2018-10-27gnu: units: Update to 2.18.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (units): Update to 2.18.
2018-10-20gnu: maxima: Update to 5.42.0.Kei Kebreau
* gnu/packages/maths.scm (maxima): Update to 5.42.0.
2018-10-11gnu: Add python-cvxopt.Ricardo Wurmus
* gnu/packages/maths.scm (python-cvxopt, python2-cvxopt): New variables.
2018-10-04gnu: petsc-openmpi: Configure with support for MUMPS solver.Paul Garlick
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis, mumps-openmpi, scalapack and pt-scotch. [arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase ahead of 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-09-24gnu: octave: Add a search path for CURLOPT_CAPATH.Kei Kebreau
* gnu/packages/maths.scm (octave)[native-search-paths]: New field.
2018-09-21gnu: hdf5-parallel-openmpi: Really enable parallel build.Paul Garlick
This fix ensures that the H5_HAVE_PARALLEL identifier is correctly set in the file H5pubconf.h. * gnu/packages/maths.scm (hdf5-parallel-openmpi)[arguments]: Add the "--enable-parallel" flag to the list of configure flags. Remove the incompatible "--enable-cxx" flag. Add 'mpi-setup' phase. Signed-off-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-21gnu: hdf5: Allow for absence of utility script.Paul Garlick
* gnu/packages/maths.scm (hdf5)[arguments]: Add condition to 'split' phase to check for existence of h5fc script. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-20gnu: Use INVOKE & return #t from Ruby package phases.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (ruby-asciimath)[arguments]: Return #t from all phases. * gnu/packages/rails.scm (ruby-debug-inspector)[arguments]: Substitute INVOKE for SYSTEM*. * gnu/packages/ruby.scm (ruby-permutation, ruby-blankslate) (ruby-minitest-pretty-diff, ruby-guard, ruby-rb-inotify, ruby-tins) (ruby-gem-hadar, ruby-term-ansicolor, ruby-json-pure) (ruby-activesupport, ruby-redcloth, ruby-netrc, ruby-unf-ext, ruby-yard) (ruby-turn, ruby-sqlite3, ruby-shoulda-context, ruby-shoulda-matchers) (ruby-shoulda, ruby-httpclient, ruby-ansi, ruby-bio-commandeer) (ruby-rubytest, ruby-brass, ruby-qed, ruby-ae, ruby-lemon, ruby-hashery) (ruby-rc4, ruby-concurrent)[arguments]: Likewise.
2018-09-19gnu: glm: Update to 0.9.9.2.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.2.
2018-09-19gnu: arpack-ng: Update to 3.6.3.Marius Bakke
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.3.
2018-09-19gnu: arpack-ng: Don't use unstable tarball.Marius Bakke
* gnu/packages/maths.scm (arpack-ng)[source]: Use GIT-FETCH.
2018-09-14gnu: Add openblas-ilp64.Eric Brown
* gnu/packages/maths.scm (openblas-ilp64): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2018-09-11mpi: Factorize openmpi setup build phase.Eric Bavier
* gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-09-11gnu: arpack-ng-openmpi: Fix build.Paul Garlick
* gnu/packages/maths.scm (arpack-ng-openmpi)[arguments]: Add 'set-test-environment phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-10gnu: mcrl2: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (mcrl2)[home-page]: Use HTTPS.
2018-09-09gnu: OpenBLAS: Update source URI.Marius Bakke
* gnu/packages/maths.scm (openblas)[source](uri): Use the more stable SourceForge mirror.
2018-09-09gnu: glm: Update to 0.9.9.1.Marius Bakke
* gnu/packages/maths.scm (glm): Update to 0.9.9.1.
2018-09-05slepc: Upgrade to 3.9.2.Eric Bavier
* gnu/packages/maths.scm (slepc): Upgrade to 3.9.2.
2018-09-05petsc: Upgrade to 3.9.3.Eric Bavier
* gnu/packages/maths.scm (petsc): Upgrade to 3.9.3. [arguments]: Remove unnecessary configure flags.
2018-09-05petsc: Move example code to "examples" output.Eric Bavier
* gnu/packages/maths.scm (petsc)[arguments]: New 'move-examples' phase.
2018-09-05gnu: Add SUNDIALS.Eric Bavier
* gnu/packages/maths.scm (sundials, sundials-openmpi): New variables.
2018-09-04gnu: petsc-openmpi: Configure with support for hdf5 data format.Paul Garlick
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add hdf5-parallel-openmpi. [arguments]: Add '--with-hdf5-include' and '--with-hdf5-lib' flags. Add 'set-test-environment' phase. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-09-03gnu: arpack-ng: Update to 3.6.2.Marius Bakke
* gnu/packages/maths.scm (arpack-ng): Update to 3.6.2.
2018-09-03gnu: arpack-ng: Drop redundant phase.Marius Bakke
* gnu/packages/maths.scm (arpack-ng)[arguments]: Remove.
2018-08-31gnu: hypre: Update to 2.14.0.Eric Bavier
* gnu/packages/maths.scm (hypre): Update to 2.14.0
2018-08-28gnu: r-pracma: Update to 2.1.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (r-pracma): Update to 2.1.5.
2018-08-19Merge branch 'staging'Marius Bakke
2018-08-18gnu: gnuplot: Update to 5.2.4.Kei Kebreau
* gnu/packages/maths.scm (gnuplot): Update to 5.2.4.
2018-08-18gnu: cddlib: Update to 0.94i.Kei Kebreau
* gnu/packages/maths.scm (cddlib): Update to 0.94i.
2018-08-17gnu: octave: Update to 4.4.1.Kei Kebreau
* gnu/packages/maths.scm (octave): Update to 4.4.1. (qtoctave)[source]: Remove obsolete patch. * gnu/packages/patches/qtoctave-qt-5.11-fix.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2018-08-17gnu: armadillo: Update to 9.100.5.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (armadillo): Update to 9.100.5.
2018-08-16Merge branch 'master' into stagingMarius Bakke
2018-08-16gnu: armadillo: Update to 9.100.4.Tobias Geerinckx-Rice
* gnu/packages/maths.scm (armadillo): Update to 9.100.4.
2018-08-15gnu: ocaml-gsl: Update to 1.22.0.Kei Kebreau
* gnu/packages/maths.scm (ocaml-gsl): Update to 1.22.0.
2018-08-13gnu: coda: Update to 2.19.Kei Kebreau
* gnu/packages/maths.scm (coda): Update to 2.19.
2018-07-30Merge branch 'master' into stagingMarius Bakke
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