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2021-05-02gnu: openmpi: Update to 4.1.1.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (openmpi): Update to 4.1.1.
2021-03-19gnu: openmpi: Update to 4.1.0.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 4.1.0.
2021-03-19gnu: openmpi: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[properties]: New field.
2021-03-17gnu: hwloc: Add 'release-monitoring-url' property.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-1)[properties]: New field.
2021-03-17gnu: Use PACKAGE/INHERIT in more places.Mark H Weaver
* gnu/packages/algebra.scm (fftwf, fftw-openmpi), gnu/packages/audio.scm (ztoolkit-rsvg), gnu/packages/bioinformatics.scm (python2-dendropy), gnu/packages/boost.scm (boost-with-python2), gnu/packages/check.scm (python2-mock, python2-pytest-mock), gnu/packages/cups.scm (hplip-minimal), gnu/packages/freedesktop.scm (libinput-minimal), gnu/packages/gettext.scm (gnu-gettext), gnu/packages/glib.scm (python2-pygobject), gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi), gnu/packages/groff.scm (groff-minimal), gnu/packages/jami.scm (ffmpeg-jami), gnu/packages/libcanberra.scm (libcanberra/gtk+-2), gnu/packages/lirc.scm (python2-lirc), gnu/packages/llvm.scm (clang-runtime-3.5), gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple), gnu/packages/node.scm (libnode), gnu/packages/onc-rpc.scm (libtirpc/hurd), gnu/packages/python-compression.scm (bitshuffle-for-snappy), gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography) (python2-cryptography, python2-m2crypto), gnu/packages/python-web.scm (python2-html2text, python2-tornado) (python2-terminado, python2-ndg-httpsclient, python2-websocket-client) (python2-rauth, python2-url, python2-s3transfer), gnu/packages/python-xyz.scm (python2-psutil, python2-serpent) (python2-humanfriendly, python2-empy, python2-parse-type, python2-polib) (python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc) (python2-ipyparallel, python2-traitlets, python2-dbus) (python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse) (python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal) (python2-contextlib2, python2-promise, python2-anyjson, python2-amqp) (python2-kombu, python2-billiard, python2-celery, python2-whoosh) (python2-jellyfish, python-rope, ptpython-2, python2-binaryornot) (python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort) (python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash) (python2-cloudpickle, python2-reparser), gnu/packages/python.scm (python2-called-python), gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt) (python-qscintilla, python-pyqt+qscintilla), gnu/packages/scanner.scm (sane-backends), gnu/packages/sdl.scm (guile3.0-sdl2), gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc) (python-sepolgen, policycoreutils), gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack), gnu/packages/simulation.scm (fenics), gnu/packages/statistics.scm (python2-statsmodels), gnu/packages/texinfo.scm (info-reader), gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1), gnu/packages/xml.scm (xmlsec-nss), gnu/packages/xorg.scm (uim-gtk, uim-qt), guix/build-system/python.scm (package-with-explicit-python) (strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-10gnu: hwloc: Update to 2.4.1.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2): Update to 2.4.1. Adjust URL.
2020-11-26gnu: hwloc: Add "doc" output.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-1)[outputs]: Add "doc". [arguments]: Add 'move-man3-pages' phase.
2020-11-02gnu: mpich: Configure to use ucx.Ludovic Courtès
Suggested by Maurice Brémond <Maurice.Bremond@inria.fr>. Fixes bug when running test suites involving MPICH: <https://issues.guix.gnu.org/39588#15>. * gnu/packages/mpi.scm (mpich)[arguments]: Pass "--with-device=ch4:ucx".
2020-09-24gnu: openmpi: Have 'mpirun' look for executables under $prefix.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Add "--enable-mpirun-prefix-by-default" to #:configure-flags.
2020-09-17gnu: openmpi: Update to 4.0.5.Greg Hogan
* gnu/packages/mpi.scm (openmpi): Update to 4.0.5. Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2020-03-31gnu: hwloc@2: Update to 2.2.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2): Update to 2.2.0.
2020-03-31gnu: hwloc@2: Skip test that fails on emulated hardware.Ludovic Courtès
Works around <https://bugs.gnu.org/40342>. * gnu/packages/mpi.scm (hwloc-2)[arguments]: Add 'skip-test-that-fails-on-qemu' phase.
2020-03-10gnu: openmpi: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (openmpi)[home-page]: Use HTTPS.
2020-03-10gnu: openmpi: Update to 4.0.3.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (openmpi): Update to 4.0.3.
2020-02-17gnu: mpi.scm: Use 'license:' prefix.Efraim Flashner
* gnu/packages/mpi.scm: Import (guix licenses) with the 'license:' prefix.
2020-02-17gnu: Add MPICH.Maurice Brémond
* gnu/packages/mpi.scm (mpich): New variable. Co-authored-by: Ludovic Courtès <ludovic.courtes@inria.fr>
2020-01-12gnu: Use the two-element 'define-deprecated' form where applicable.Ludovic Courtès
* gnu/packages/guile.scm (guile-json): Use the two-element 'define-deprecated' form. * gnu/packages/kde.scm (kdevplatform): Likewise. * gnu/packages/mpi.scm (hwloc-2.0): Likewise. * gnu/packages/qt.scm (qt): Likewise.
2019-12-20gnu: intel-mpi-benchmarks: Merge with "imb-openmpi".Ludovic Courtès
* gnu/packages/mpi.scm (intel-mpi-benchmarks): Remove. * gnu/packages/benchmark.scm (imb): Rename to... (intel-mpi-benchmarks): ... this. Change 'name'. Update to 2019.3. [arguments]: Remove 'build phase. Rewrite 'install phase. Pass #:parallel-build? and #:make-flags. (intel-mpi-benchmarks/openmpi): New variable. (imb-openmpi): Rewrite in terms of 'deprecated-package'.
2019-11-29gnu: openmpi: Increase priority of the PSM component.Ludovic Courtès
* gnu/packages/patches/openmpi-psm2-priority.patch: Rename to... * gnu/packages/patches/openmpi-mtl-priorities.patch: ... this. Add hunk to change the priority of PSM. * gnu/packages/mpi.scm (openmpi)[source]: Adjust accordingly. * gnu/local.mk (dist_patch_DATA): Likewise.
2019-11-19gnu: hwloc: Adjust references to 'hwloc'.Ludovic Courtès
This is a followup to 8ec7ca22d363b80b173ce87c5f39d5ca9686d248, which led to a stack overflow (cyclic graph) when attempting to build HWLOC-2. * gnu/packages/mpi.scm (hwloc-2): Refer to HWLOC-1 instead of HWLOC.
2019-11-19gnu: hwloc: Default to 2.x.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc): Rename to... (hwloc-1): ... this. (hwloc-2): Adjust 'inherit' clause accordingly. (hwloc): New variable.
2019-11-16gnu: openmpi: Silence UCX warnings when running tests.Ludovic Courtès
* gnu/packages/mpi.scm (%openmpi-setup): Set "UCX_LOG_LEVEL".
2019-11-15Revert "gnu: openmpi: Pass explicit "--with-*" configure flags."Ludovic Courtès
This reverts commit eaa52b5baa8fbb26a79890561d0c40344d1e1bf3, which would lead to build failures on systems other than x86_64-linux.
2019-11-15gnu: openmpi: Fix typo.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: For UCX, check the supported systems of UCX, not PSM2.
2019-11-15gnu: openmpi: Raise the priority of the PSM2 component.Ludovic Courtès
This allows us to get better performance by default on machines with OmniPath hardware. * gnu/packages/patches/openmpi-psm2-priority.patch: New file. * gnu/packages/mpi.scm (openmpi)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-11-15gnu: openmpi, slurm: Switch to hwloc 2.x.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2. * gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
2019-11-15gnu: hwloc: Update to 2.1.0.Ludovic Courtès
* gnu/packages/mpi.scm (hwloc-2.0): Rename to... (hwloc-2): ... this. Update to 2.1.0 (hwloc-2.0): Define as deprecated. * gnu/packages/opencl.scm (pocl)[inputs]: Adjust accordingly.
2019-11-15gnu: Add Intel MPI Benchmarks.Ludovic Courtès
* gnu/packages/mpi.scm (intel-mpi-benchmarks): New variable.
2019-11-15gnu: openmpi: Pass explicit "--with-*" configure flags.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[arguments]: Pass "--with-ucx", "--with-psm", and "--with-psm2".
2019-11-08gnu: python-mpi4py: Update to 3.0.3.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.3.
2019-10-15gnu: openmpi: Add dependency on UCX when supported.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Add UCX conditionally.
2019-10-10gnu: openmpi: Update to 4.0.2.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 4.0.2.
2019-07-14gnu: Adjust uses of C{,PLUS}_INCLUDE_PATH for GCC 7.Marius Bakke
These variables are no longer set in the build environment by default. GCC still respects these search paths and treats them as "system headers" so we can continue to use them, just not expect them to be available. * gnu/packages/mpi.scm (openmpi)[arguments]: Do not attempt to read from C_INCLUDE_PATH, nor CPLUS_INCLUDE_PATH. * gnu/packages/games.scm (kiki)[arguments]: Likewise. * gnu/packages/networking.scm (hcxtools)[arguments]: Likewise. * gnu/packages/synergy.scm (synergy)[arguments]: Likewise. * gnu/packages/bioinformatics.scm (gemma, sailfish)[arguments]: Likewise. * gnu/packages/maths.scm (dune-alugrid)[arguments]: Likewise.
2019-06-21gnu: python-mpi4py: Update to 3.0.2.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-16gnu: openmpi: Update to .Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (openmpi): Update to . mpi openmpi
2019-03-18gnu: Add java-openmpi.Ricardo Wurmus
* gnu/packages/mpi.scm (java-openmpi): New variable.
2019-02-20gnu: openmpi: Let configure enable PSM based on inputs.Eric Bavier
This fixes OpenMPI builds on systems not supported by the PSM packages. * gnu/packages/mpi.scm (openmpi)[arguments]: Remove '--enable-psm' and '--enable-psm2' from #:configure-flags.
2019-02-18gnu: python-mpi4py: Update to 3.0.1.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): Update to 3.0.1. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-02-17gnu: openmpi: Add InfiniBand support.Ricardo Wurmus
* gnu/packages/mpi.scm (openmpi)[inputs]: Add opensm. [arguments]: Add openib configure flags; add build phase "find-opensm-headers".
2019-02-09gnu: openmpi: Upgrade to 4.0.0.Eric Bavier
* gnu/packages/linux.scm (psm)[arguments]: Add 'patch-sysmacros phase to fix "undefined reference to `minor'" errors while linking against libinfinipath.so. * gnu/packages/mpi.scm (openmpi): Upgrade to 4.0.0. [inputs]: Add libevent. [arguments]: Simplify configure-flags. Use system libevent. Adjust romio version strings. (%openmpi-setup): Use OMPI_MCA_rmaps_base_mapping_policy for oversubscription.
2019-02-07gnu: openmpi: Add dependency on SLURM.Ludovic Courtès
This allows users to run Open MPI programs with 'srun'. * gnu/packages/mpi.scm (openmpi)[inputs]: Add SLURM. [arguments]: Add "--with-pmi" to #:configure-flags.
2019-01-31gnu: hwloc: Update to 2.0.3.Marius Bakke
* gnu/packages/mpi.scm (hwloc-2.0): Update to 2.0.3.
2019-01-31gnu: hwloc@1: Update to 1.11.12.Marius Bakke
* gnu/packages/mpi.scm (hwloc): Update to 1.11.12.
2018-11-14gnu: Add python-mpi4py.Paul Garlick
* gnu/packages/mpi.scm (python-mpi4py): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-10-04gnu: hwloc: Update to 2.0.2.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-09-11mpi: Factorize openmpi setup build phase.Eric Bavier
* gnu/packages/mpi.scm (%openmpi-setup): New variable. * gnu/packages/maths.scm (scalapack, slepc-openmpi, mumps-openmpi) (superlu-dist, p4est, petsc-openmpi, hypre-openmpi, elemental) (sundials-openmpi, arpack-ng-openmpi)[arguments]: Use it in #:phases.
2018-05-25gnu: openmpi: Add PSM2 (Intel OmniPath) support.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi)[inputs]: Add PSM2 on supported systems.
2018-05-25gnu: openmpi: Reintroduce PSM (Intel TrueScale) support.Ludovic Courtès
Fixes a regression introduced in 9129804230a3a4272731609f6418b876ba450575 whereby PSM would never be added as an input. * gnu/packages/mpi.scm (openmpi)[inputs]: Re-add PSM on supported systems.
2018-05-25gnu: openmpi: Update to 3.0.1.Ludovic Courtès
* gnu/packages/mpi.scm (openmpi): Update to 3.0.1. [arguments]: In 'remove-absolute' phase, adjust romio file name. * gnu/packages/maths.scm (scalapack)[arguments]: Add 'set-test-environment' phase. (slepc-openmpi)[arguments]: Likewise. (mumps-openmpi)[arguments]: Likewise. (superlu-dist)[arguments]: In 'check' phase, set 'OMPI_MCA_plm_rsh_agent'. (scotch)[arguments]: In 'build-esmumps', likewise. (p4est)[arguments]: Add 'set-test-environment' phase. (hypre-openmpi)[arguments]: Likewise.
2018-04-10gnu: hwloc: Skip 'linux-libnuma' test.Ludovic Courtès
That test would fail on some machines, for instance build machines behind berlin.guixsd.org. * gnu/packages/mpi.scm (hwloc)[arguments]: Add 'skip-linux-libnuma-test' phase. (hwloc-2.0)[arguments]: Replace it.
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