Age | Commit message (Collapse) | Author |
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* gnu/packages/parallel.scm (parallel): Update to 20191222.
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* gnu/packages/python-xyz.scm (python-pandas, python2-pandas): Move from
here...
* gnu/packages/python-science.scm (python-pandas, python2-pandas): ...to here.
* gnu/packages/benchmark.scm, gnu/packages/databases.scm,
gnu/packages/graph.scm, gnu/packages/parallel.scm,
gnu/packages/serialization.scm: Import (gnu packages python-science).
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* gnu/packages/parallel.scm (parallel): Update to 20191122.
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Fixes a regression introduced in
7c96befa52ba127f68a066162258e600afbc73fb whereby ./configure would fail
on 32-bit platforms due to 32-bit support being "deprecated".
* gnu/packages/parallel.scm (slurm)[arguments]: Pass
"--enable-deprecated" configure flag unless 'target-64bit?' returns
true.
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* gnu/packages/mpi.scm (openmpi)[inputs]: Switch to HWLOC-2.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
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* gnu/packages/parallel.scm (slurm)[arguments]: Pass "--disable-static".
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* gnu/packages/parallel.scm (slurm): Update to 19.05.3-2.
[source](snippet): Keep "contribs/mpi" and its reference in
'Makefile.am'.
[inputs]: Remove OPENSSL.
[arguments]: Remove "--with-ssl". Add 'install-libpmi' phase.
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* gnu/packages/parallel.scm (parallel): Update to 20191022.
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* gnu/packages/parallel.scm (parallel): Update to 20190922.
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* gnu/packages/parallel.scm (parallel): Update to 20190822.
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* gnu/packages/parallel.scm (python-slurm-magic): New variable.
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* gnu/packages/parallel.scm (parallel): Update to 20190522.
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* gnu/packages/parallel.scm (parallel): Update to 20190422.
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Until now, we were using syslogdir=$prefix/etc, which did not exist.
Thus, commands would always fail like this:
$ guix environment --ad-hoc slurm --pure -- squeue -u $USER
squeue: error: s_p_parse_file: unable to status file /gnu/store/…-slurm-17.11.3/etc/slurm.conf: No such file or directory, retrying in 1sec up to 60sec
* gnu/packages/parallel.scm (slurm)[arguments]: Pass --sysconfdir.
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* gnu/packages/parallel.scm (parallel): Update to 20190322.
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* gnu/packages/parallel.scm (parallel): Update to 20190222.
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* gnu/packages/parallel.scm (parallel): Update to 20190122.
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* gnu/packages/parallel.scm (parallel): Update to 20181222.
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* gnu/packages/parallel.scm (parallel): Update to 20181122.
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* gnu/packages/parallel.scm (parallel): Update to 20181022.
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* gnu/packages/parallel.scm (parallel): Update to 20180922.
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* gnu/packages/parallel.scm (parallel): Update to 20180822.
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* gnu/packages/parallel.scm (parallel): Update to 20180722.
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Because it's implicit.
* gnu/packages/parallel.scm (parallel)[inputs]: Remove 'bash'.
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* gnu/packages/parallel.scm (parallel)[arguments]: Replace 'ps' and 'perl'
substitutions with a 'wrap-program' phase. Move the 'post-install-test' phase
after it.
[inputs]: Add bash.
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* gnu/packages/parallel.scm (parallel): Update to 20180622.
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* gnu/packages/parallel.scm (parallel): Update to 20180522.
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* gnu/packages/parallel.scm (parallel): Update to 20180422.
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* gnu/packages/parallel.scm (parallel): Update to 20180322.
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* gnu/packages/parallel.scm (slurm): Update to 17.11.3.
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* gnu/packages/parallel.scm (parallel): Update to 20180222.
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The upstream tarball changed almost immediately after release.
See https://lists.gnu.org/archive/html/guix-devel/2018-01/msg00319.html.
* gnu/packages/parallel.scm (parallel)[source]: Update hash.
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* gnu/packages/parallel.scm (parallel)[arguments]: Use INVOKE.
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* gnu/packages/parallel.scm (parallel): Update to 20180122.
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* gnu/packages/parallel.scm (slurm)[license]: Add more licences.
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* gnu/packages/parallel.scm (slurm)[home-page]: Use HTTPS.
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* gnu/packages/parallel.scm (slurm): Update to 17.11.2.
[source]: Replace patch with less fragile SUBSTITUTE* in a snippet.
[arguments]: Rename ‘autogen’ phase to ‘autoconf’. Use INVOKE.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/parallel.scm (parallel): Update to 20171222.
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* gnu/packages/parallel.scm (parallel): Update to 20171122.
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* gnu/packages/parallel.scm (slurm): Update to 16.05.11.
[source]: Use the recommended download URL.
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* gnu/packages/parallel.scm (parallel): Update to 20171022.
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* gnu/packages/parallel.scm (parallel): Update to 20170922.
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* gnu/packages/audio.scm (audacity, rtmidi)[arguments]: Correct phases
accordingly.
* gnu/packages/bioinformatics.scm (mash, seek, vsearch, emboss,
htslib-for-sambamba)[arguments]: Likewise.
* gnu/packages/ci.scm (cuirass)[arguments]: Likewise.
* gnu/packages/compression.scm (minizip, xdelta)[arguments]: Likewise.
* gnu/packages/cpp.scm (libzen)[arguments]: Likewise.
* gnu/packages/crypto.scm (opendht)[arguments]: Likewise.
* gnu/packages/databases.scm (4store, mdbtools)[arguments]: Likewise.
* gnu/packages/debug.scm (stress-make)[arguments]: Likewise.
* gnu/packages/dns.scm (dnscrypt-proxy, dnscrypt-wrapper)[arguments]:
Likewise.
* gnu/packages/emacs.scm (emacs-pdf-tools)[arguments]: Likewise.
* gnu/packages/embedded.scm (libjaylink, openocd)[arguments]: Likewise.
* gnu/packages/engineering.scm (gerbv)[arguments]: Likewise.
* gnu/packages/erlang.scm (erlang)[arguments]: Likewise.
* gnu/packages/ftp.scm (weex)[arguments]: Likewise.
* gnu/packages/gnome.scm (dia)[arguments]: Likewise.
* gnu/packages/gnunet.scm (gnurl, guile-gnunet)[arguments]: Likewise.
* gnu/packages/gtk.scm (guile-rsvg, graphene)[arguments]: Likewise.
* gnu/packages/guile.scm (guildhall, guile-ics, guile-sqlite3)[arguments]:
Likewise.
* gnu/packages/ibus.scm (ibus-libpinyin)[arguments]: Likewise.
* gnu/packages/irc.scm (weechat)[arguments]: Likewise.
* gnu/packages/java.scm (classpath-devel)[arguments]: Likewise.
* gnu/packages/libreoffice.scm (libetonyek)[arguments]: Likewise.
* gnu/packages/libusb.scm (hidapi)[arguments]: Likewise.
* gnu/packages/linux.scm (gpm)[arguments]: Likewise.
* gnu/packages/logging.scm (glog)[arguments]: Likewise.
* gnu/packages/machine-learning.scm (ghmm)[arguments]: Likewise.
* gnu/packages/mail.scm (dovecot-trees, dovecot-libsodium-plugin, esmtp)
[arguments]: Likewise.
* gnu/packages/messaging.scm (freetalk, libmesode, libstrophe)[arguments]:
Likewise.
* gnu/packages/microcom.scm (microcom)[arguments]: Likewise.
* gnu/packages/ocaml.scm (ocaml-ssl)[arguments]: Likewise.
* gnu/packages/parallel.scm (slurm)[arguments]: Likewise.
* gnu/packages/pdf.scm (libharu)[arguments]: Likewise.
* gnu/packages/samba.scm (cifs-utils)[arguments]: Likewise.
* gnu/packages/serialization.scm (msgpack)[arguments]: Likewise.
* gnu/packages/shells.scm (scsh)[arguments]: Likewise.
* gnu/packages/telephony.scm (libiax2)[arguments]: Likewise.
* gnu/packages/textutils.scm (dotconf)[arguments]: Likewise.
* gnu/packages/version-control.scm (findnewest)[arguments]: Likewise.
* gnu/packages/video.scm (libmediainfo, mediainfo)[arguments]: Likewise.
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* gnu/packages/parallel.scm (parallel): Update to 20170822.
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* gnu/packages/parallel.scm (parallel): Update to 20170722.
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* gnu/packages/mpi.scm (hwloc)[outputs]: New field.
[arguments]: Add 'avoid-circular-references' phase.
(openmpi)[inputs]: Use the "lib" output of HWLOC.
* gnu/packages/parallel.scm (slurm)[inputs]: Likewise.
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* gnu/packages/parallel.scm (parallel): Update to 20170522.
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* gnu/packages/parallel.scm (parallel): Update to 20170422.
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* gnu/packages/parallel.scm (parallel): Update to 20170322.
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* gnu/packages/parallel.scm (slurm): Update to 16.05.9.1.
* gnu/packages/patches/slurm-configure-remove-nonfree-contribs.patch:
Removing two contribs which are added in the new version.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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