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2021-03-24Merge remote-tracking branch 'origin/master' into core-updatesEfraim Flashner
2021-03-17gnu: Use PACKAGE/INHERIT in more places.Mark H Weaver
* gnu/packages/algebra.scm (fftwf, fftw-openmpi), gnu/packages/audio.scm (ztoolkit-rsvg), gnu/packages/bioinformatics.scm (python2-dendropy), gnu/packages/boost.scm (boost-with-python2), gnu/packages/check.scm (python2-mock, python2-pytest-mock), gnu/packages/cups.scm (hplip-minimal), gnu/packages/freedesktop.scm (libinput-minimal), gnu/packages/gettext.scm (gnu-gettext), gnu/packages/glib.scm (python2-pygobject), gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi), gnu/packages/groff.scm (groff-minimal), gnu/packages/jami.scm (ffmpeg-jami), gnu/packages/libcanberra.scm (libcanberra/gtk+-2), gnu/packages/lirc.scm (python2-lirc), gnu/packages/llvm.scm (clang-runtime-3.5), gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple), gnu/packages/node.scm (libnode), gnu/packages/onc-rpc.scm (libtirpc/hurd), gnu/packages/python-compression.scm (bitshuffle-for-snappy), gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography) (python2-cryptography, python2-m2crypto), gnu/packages/python-web.scm (python2-html2text, python2-tornado) (python2-terminado, python2-ndg-httpsclient, python2-websocket-client) (python2-rauth, python2-url, python2-s3transfer), gnu/packages/python-xyz.scm (python2-psutil, python2-serpent) (python2-humanfriendly, python2-empy, python2-parse-type, python2-polib) (python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc) (python2-ipyparallel, python2-traitlets, python2-dbus) (python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse) (python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal) (python2-contextlib2, python2-promise, python2-anyjson, python2-amqp) (python2-kombu, python2-billiard, python2-celery, python2-whoosh) (python2-jellyfish, python-rope, ptpython-2, python2-binaryornot) (python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort) (python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash) (python2-cloudpickle, python2-reparser), gnu/packages/python.scm (python2-called-python), gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt) (python-qscintilla, python-pyqt+qscintilla), gnu/packages/scanner.scm (sane-backends), gnu/packages/sdl.scm (guile3.0-sdl2), gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc) (python-sepolgen, policycoreutils), gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack), gnu/packages/simulation.scm (fenics), gnu/packages/statistics.scm (python2-statsmodels), gnu/packages/texinfo.scm (info-reader), gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1), gnu/packages/xml.scm (xmlsec-nss), gnu/packages/xorg.scm (uim-gtk, uim-qt), guix/build-system/python.scm (package-with-explicit-python) (strip-python2-variant): Use PACKAGE/INHERIT.
2021-03-13gnu: micropython: Update to 1.14.Tobias Geerinckx-Rice
* gnu/packages/python.scm (micropython): Update to 1.14.
2021-03-06Merge branch 'master' into core-updatesChristopher Baines
2021-03-02gnu: Python 2: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-2.7-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-2.7)[replacement]: New field. (python-2.7/fixed): New variable.
2021-02-25gnu: Python 3.9: Update to 3.9.2.Greg Hogan
* gnu/packages/python.scm (python-3.9): Update to 3.9.2. [source]: Remove obsolete patch. * gnu/packages/patches/python-3.9-CVE-2021-3177.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it. Signed-off-by: Leo Famulari <leo@famulari.name>
2021-02-23gnu: Python: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-3.8-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.8)[replacement]: New field. (python-3.8/fixed): New variable.
2021-02-19gnu: Python 3.9: Fix CVE-2021-3177.Leo Famulari
* gnu/packages/patches/python-3.9-CVE-2021-3177.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.9)[source]: Use it.
2021-02-01gnu: pypy3: Do not alter PYTHONPATH.Maxim Cournoyer
* gnu/packages/python.scm (pypy3): Do not alter PYTHONPATH.
2021-02-01gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.Maxim Cournoyer
Using PYTHONPATH as a mean to discover the Python packages had the following issues: 1. It is not versioned, so different versions of Python would clash if installed in a shared profile. 2. It would interfere with the host Python site on foreign distributions, sometimes preventing a a user to login their GDM session (!). 3. It would take precedence over user installed Python packages installed through pip. 4. It would leak into Python virtualenvs, which are supposed to create isolated Python environments. This changes fixes the above issues by making use of a sitecustomize.py module. The newly introduced GUIX_PYTHONPATH environment variable is read from the environment, filtered for the current Python version of the interpreter, and spliced in 'sys.path' just before Python's own site location, which provides the expected behavior. * gnu/packages/aux-files/python/sitecustomize.py: New file. * Makefile.am: Register it. * gnu/packages/python.scm (customize-site) (guix-pythonpath-search-path): New procedures. (python-2.7)[phases]{install-sitecustomize.py}: New phase. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. (python-3.9)[native-search-paths]: Likewise. [phases]{install-sitecustomize}: Override with correct version. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * gnu/packages/commencement.scm (python-boot0): [phases]{install-sitecustomize}: Likewise. [native-inputs]{sitecustomize.py}: New input. [native-search-paths]: Replace PYTHONPATH with GUIX_PYTHONPATH. * guix/build/python-build-system.scm (site-packages): Do not add a trailing '/'. squash! gnu: python: Replace PYTHONPATH by GUIX_PYTHONPATH.
2021-01-15gnu: python-3.9: Add a search path specification for PYTHONTZPATH.Maxim Cournoyer
Python 3.9 implemented PEP 615 (<)https://www.python.org/dev/peps/pep-0615/>), which relies on either a compiled time default value or the PYTHONTZPATH environment variable to find the system tzdata database. * gnu/packages/python.scm (python-3.9)[native-search-paths]: Add a new search path specification for PYTHONTZPATH.
2021-01-12gnu: python: Update to 3.9.1 and streamline package definition.Maxim Cournoyer
* gnu/packages/python.scm (python-3.8): Rename to... (python-3.9): ... this. Update version to 3.9.1. [arguments]{make-flags}: Restore test_socket test. [phases]{unset-SOURCE_DATE_EPOCH, reset-SOURCE_DATE_EPOCH}: Remove phases. {rebuild-bytecode}: Simplify code. Set the invalidation-mode argument of the compileall module to "unchecked-hash", to ensure determinism. (python-3): Adjust to refer to python-3.9. * gnu/packages/patches/python-3-fix-tests.patch: Rebase and extend patch. * gnu/packages/patches/python-3.8-fix-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): De-register it.
2021-01-12gnu: python-3.8: Apply python-3-arm-alignment.patch unconditionally.Maxim Cournoyer
* gnu/packages/python.scm (python-3.8)[source]: Add "python-3-arm-alignment.patch" to the patches field. [phases]{apply-alignment-patch}: Remove phase. [native-inputs]: Remove arm-alignment.patch.
2021-01-12gnu: python-3.8: Fix indentation.Maxim Cournoyer
* gnu/packages/python.scm (python-3.8): Fix indentation.
2020-12-21Merge branch 'master' into ungraftingMarius Bakke
2020-12-14gnu: Add python-3.9.Tanguy Le Carrour
* gnu/packages/python.scm (python-3.9): New variable. * gnu/packages/patches/python-3.9-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-12-08gnu: Python: Fix CVE-2020-26116.Marius Bakke
* gnu/packages/patches/python-CVE-2020-26116.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-3.8)[source](patches): Add it.
2020-11-29Merge remote-tracking branch 'origin/master' into core-updatesChristopher Baines
2020-10-26gnu: python: Move Hurd-specific configure fix into a patch.Jan (janneke) Nieuwenhuizen
* gnu/packages/patches/python-3-configure-hurd.patch: this New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-3.8)[source]: Use it. [arguments]: Remove "support-hurd-cross-compile" stage.
2020-10-26gnu: python: Disable failing tests for the Hurd.Jan (janneke) Nieuwenhuizen
Fixes <https://bugs.gnu.org/43860>. * gnu/packages/python.scm (python-3.8)[arguments]: When building for the Hurd, disable more tests.
2020-10-20gnu: python-2.7: Byte compile files with a single optimization level.Maxim Cournoyer
* gnu/packages/python.scm (python-2.7)[phases]{rebuild-bytecode}: Byte compile using optimization level, -OO. Provide the output directory as the source argument to 'compileall', instead of looping over each individual source file.
2020-10-20gnu: python-2.7: Update to 2.7.18.Maxim Cournoyer
* gnu/packages/python.scm (python-2.7): Update to 2.7.18.
2020-10-20gnu: python-2.7: Fix indentation.Maxim Cournoyer
* gnu/packages/python.scm (python-2.7): Fix indentation.
2020-10-19Merge branch 'staging'Maxim Cournoyer
Conflicts: gnu/packages/admin.scm gnu/packages/commencement.scm gnu/packages/gdb.scm gnu/packages/llvm.scm gnu/packages/package-management.scm gnu/packages/tls.scm
2020-09-29gnu: micropython: Update to 1.13.Nicolas Goaziou
* gnu/packages/python.scm (micropython): Update to 1.13.
2020-09-18gnu: Python 3: Update to 3.8.5.Greg Hogan
* gnu/packages/python.scm (python-3.8): Update to 3.8.5. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-09-14gnu: python-wrapper: Mention pip in description.Pierre Neidhardt
* gnu/packages/python.scm (python-wrapper)[description]: Mention that `pip' won't work properly if both python and python-wrapper are installed.
2020-07-13gnu: micropython: Update to 1.12.Efraim Flashner
* gnu/packages/python.scm (micropython): Update to 1.12. [arguments]: Add phase to compile mpy-cross before compiling micropython.
2020-06-30gnu: Python: Support cross-compiling for the Hurd.Marius Bakke
* gnu/packages/python.scm (python-3.8): When cross-compiling for Hurd, add substitution for the configure script.
2020-06-01gnu: Add pypy3.Lars-Dominik Braun
* gnu/packages/python.scm (pypy3): New public variable. * gnu/packages/patches/pypy3-7.3.1-fix-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-05-13mailmap: Update entries for Nikita.nikita
* .mailmap: change email and name for Nikita. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish, gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/elixir.scm, gnu/packages/emacs-xyz.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/erlang.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile-xyz.scm, gnu/packages/haskell-apps.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell-xyz.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp-xyz.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-compression.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python-xyz.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2020-04-19gnu: python: Build fix for the Hurd.Jan (janneke) Nieuwenhuizen
* gnu/packages/python.scm (python-2.7)[arguments]: Add `fix-regen' stage to correct a reference to "/usr". (python-3.8): Remove build fix for 2.x..3.5.9 that breaks on 3.8.2.
2020-04-02gnu: Python: Move arm-alignment.patch to a native-input + phase.Marius Bakke
This follows up 67ca82e6ddc9f1c87fa8c033729a1f53b7c2b3ba which was ineffective when running 'guix build --system=armhf-linux python' on e.g. x86_64-linux because the conditional would always return the native system. * gnu/packages/python.scm (python-3.8)[native-inputs]: Add "arm-alignment.patch". [arguments]: Add phase to apply it. [source](patches): Remove it. * gnu/packages/commencement.scm (python-boot0): Prevent inheriting the phase.
2020-04-01gnu: Python: Fix test failure on ARMv7.Marius Bakke
* gnu/packages/patches/python-3-arm-alignment.patch: New file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-3.8)[source](patches): Add it when the current system is ARM.
2020-03-05gnu: Python: Update to 3.8.2.Marius Bakke
* gnu/packages/python.scm (python-3.8): Update to 3.8.2.
2020-01-24gnu: Python: Update to 3.8.1.Marius Bakke
* gnu/packages/python.scm (python-3.7): Rename to ... (python-3.8): ... this. Update to 3.8.1. [source](patches): Add "python-3.8-fix-tests.patch". [source](snippet): Adjust for renamed file. (python-3): Alias to PYTHON-3.8. * gnu/packages/patches/python-3-search-paths.patch: Adjust for 3.8. * gnu/packages/patches/python-3.8-search-paths.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2020-01-14gnu: python2: Update to 2.7.17.Marius Bakke
* gnu/packages/python.scm (python-2.7): Update to 2.7.17.
2019-12-05gnu: libffi: Update to 3.3.Marius Bakke
* gnu/packages/patches/libffi-3.2.1-complex-alpha.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/libffi.scm (libffi): Update to 3.3. [source](patches): Remove. * gnu/packages/python.scm (python-3.7)[arguments]: Remove workaround.
2019-12-05Merge branch 'master' into core-updatesMarius Bakke
2019-11-20gnu: Add python-3.8.Tanguy Le Carrour
* gnu/packages/python.scm (python-3.8): New public variable. [source]: Add patches to skip four tests. * gnu/packages/patches/python-3.8-search-paths.patch: New file. * gnu/packages/patches/python-3.8-fix-tests.patch: New file. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-09-24gnu: python: Further cross-compilation fixes.Mathieu Othacehe
* gnu/packages/patches/python-2.7-search-paths.patch: Add cross-compilation support. * gnu/packages/patches/python-3-search-paths.patch: Ditto. * gnu/packages/patches/python-cross-compile.patch: New patch. * gnu/local.mk (dist_patch_DATA): Add above new patch. * gnu/packages/python.scm (python-2.7)[patches]: Add new patch above, [arguments]: Set _PYTHON_HOST_PLATFORM env variable when cross compiling.
2019-09-24gnu: python: Fix cross compilation.Mathieu Othacehe
* gnu/packages/python.scm (python-2.7)[arguments]: Add a configure flag to disable a check failing when cross-compiling. This is covered here: https://lists.yoctoproject.org/pipermail/poky/2013-June/008997.html, [native-inputs]: Add self and which when cross-compiling, (python-3.7)[arguments]: Refer to native python when cross-compiling.
2019-09-17Merge branch 'master' into core-updatesLudovic Courtès
2019-09-08gnu: micropython: Update to 1.11.Efraim Flashner
* gnu/packages/python.scm (micropython): Update to 1.11.
2019-07-09gnu: Python: Update to 3.7.4.Marius Bakke
* gnu/packages/python.scm (python-3.7): Update to 3.7.4. [source](snippet): Move disabled tests ... [arguments]<#:make-flags>: ... here. Enable previously failing tests. <#:phases>: Add 'set-TZDIR'. [native-inputs]: Add TZDATA-FOR-TESTS. * gnu/packages/commencement.scm (python-boot0)[arguments]: Clear <#:make-flags>. Delete 'set-TZDIR' phase. * gnu/packages/patches/python-3-fix-tests.patch: Disable two new tests that do not work in the build container. Adjust context.
2019-07-07gnu: Python: Avoid needless reference on coreutils.Marius Bakke
* gnu/packages/python.scm (python-2.7)[arguments]: Pass "INSTALL" and "MKDIR_P" in <#:configure-flags>.
2019-07-02gnu: glibc: Update to 2.29.Marius Bakke
* gnu/packages/patches/glibc-bootstrap-system.patch, gnu/packages/patches/glibc-supported-locales.patch: Adjust for glibc 2.29. * gnu/packages/patches/glibc-2.28-supported-locales.patch, gnu/packages/patches/glibc-CVE-2019-7309.patch, gnu/packages/patches/glibc-CVE-2019-9169.patch, gnu/packages/patches/glibc-2.29-git-updates.patch: New files. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/base.scm (glibc): Update to 2.29. [source](patches): Add 'glibc-CVE-2019-7309.patch', 'glibc-CVE-2019-9169.patch', and 'glibc-2.29-git-updates.patch'. Remove 'glibc-hurd-magic-pid.patch'. [native-inputs]: Add PYTHON-MINIMAL. (glibc-2.28): New public variable. * gnu/packages/commencement.scm (expat-sans-tests, python-boot0): New variables. (glibc-final-with-bootstrap-bash)[native-inputs]: Add PYTHON-BOOT0. * gnu/packages/python.scm (python-3.7)[arguments]: Disable test that fails with glibc 2.29.
2019-06-20gnu: python: Allow building on low-memory systems.Jeremiah@pdp10.guru
* gnu/packages/python.scm (python-3.7)[source]: Delete memory-intensive test. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2019-06-20Merge branch 'staging' into core-updatesMarius Bakke
2019-06-18gnu: python2: Add 'cpe-name' property.Efraim Flashner
* gnu/packages/python.scm (python2)[properties]: New field.
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