| Age | Commit message (Collapse) | Author |
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Conflicts:
gnu/packages/bioinformatics.scm
gnu/packages/cmake.scm
gnu/packages/curl.scm
gnu/packages/emacs-xyz.scm
gnu/packages/gpodder.scm
gnu/packages/music.scm
gnu/packages/patches/glibc-bootstrap-system.patch
gnu/packages/python-xyz.scm
gnu/packages/shells.scm
gnu/packages/statistics.scm
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* gnu/packages/simulation.scm (python-dolfin-adjoint): New variable.
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* gnu/packages/simulation.scm (python-pygmsh): New variable.
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* gnu/packages/simulation.scm (python-meshio): New variable.
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* gnu/packages/algebra.scm (fftwf, fftw-openmpi),
gnu/packages/audio.scm (ztoolkit-rsvg),
gnu/packages/bioinformatics.scm (python2-dendropy),
gnu/packages/boost.scm (boost-with-python2),
gnu/packages/check.scm (python2-mock, python2-pytest-mock),
gnu/packages/cups.scm (hplip-minimal),
gnu/packages/freedesktop.scm (libinput-minimal),
gnu/packages/gettext.scm (gnu-gettext),
gnu/packages/glib.scm (python2-pygobject),
gnu/packages/gnome.scm (gdl-minimal, libsoup-minimal, python2-pyatspi),
gnu/packages/groff.scm (groff-minimal),
gnu/packages/jami.scm (ffmpeg-jami),
gnu/packages/libcanberra.scm (libcanberra/gtk+-2),
gnu/packages/lirc.scm (python2-lirc),
gnu/packages/llvm.scm (clang-runtime-3.5),
gnu/packages/mpi.scm (java-openmpi, openmpi-thread-multiple),
gnu/packages/node.scm (libnode),
gnu/packages/onc-rpc.scm (libtirpc/hurd),
gnu/packages/python-compression.scm (bitshuffle-for-snappy),
gnu/packages/python-crypto.scm (python2-pycrypto, python2-cryptography)
(python2-cryptography, python2-m2crypto),
gnu/packages/python-web.scm (python2-html2text, python2-tornado)
(python2-terminado, python2-ndg-httpsclient, python2-websocket-client)
(python2-rauth, python2-url, python2-s3transfer),
gnu/packages/python-xyz.scm (python2-psutil, python2-serpent)
(python2-humanfriendly, python2-empy, python2-parse-type, python2-polib)
(python2-jsonschema, python2-pystache, python2-cython, python2-numpydoc)
(python2-ipyparallel, python2-traitlets, python2-dbus)
(python2-beautifulsoup4, python2-pep517, python2-flake8, python2-llfuse)
(python2-tlsh, python-file, python2-notebook, python-jupyter-console-minimal)
(python2-contextlib2, python2-promise, python2-anyjson, python2-amqp)
(python2-kombu, python2-billiard, python2-celery, python2-whoosh)
(python2-jellyfish, python-rope, ptpython-2, python2-binaryornot)
(python2-setproctitle, python2-argcomplete, python2-xopen, python2-isort)
(python2-radon, python2-rfc6555, python2-activepapers, python2-send2trash)
(python2-cloudpickle, python2-reparser),
gnu/packages/python.scm (python2-called-python),
gnu/packages/qt.scm (python2-sip, python-pyqt-without-qtwebkit, python2-pyqt)
(python-qscintilla, python-pyqt+qscintilla),
gnu/packages/scanner.scm (sane-backends),
gnu/packages/sdl.scm (guile3.0-sdl2),
gnu/packages/selinux.scm (checkpolicy, libselinux, libsemanage, secilc)
(python-sepolgen, policycoreutils),
gnu/packages/serialization.scm (lua5.1-libmpack, lua5.2-libmpack),
gnu/packages/simulation.scm (fenics),
gnu/packages/statistics.scm (python2-statsmodels),
gnu/packages/texinfo.scm (info-reader),
gnu/packages/wxwidgets.scm (wxwidgets-gtk2, wxwidgets-gtk2-3.1),
gnu/packages/xml.scm (xmlsec-nss),
gnu/packages/xorg.scm (uim-gtk, uim-qt),
guix/build-system/python.scm (package-with-explicit-python)
(strip-python2-variant): Use PACKAGE/INHERIT.
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* gnu/packages/simulation.scm (fenics)[phases]: Delete trailing #t.
[phases]{pre-check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (python-fenics-ffc)
[phases]{check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (python-fenics-ffc)
[phases]{check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (python-fenics-fiat)
[phases]{check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (python-fenics-ufl)
[phases]{check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (python-fenics-dijitso)
[phases]{check}: Do not alter PYTHONPATH.
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* gnu/packages/simulation.scm (fenics)[phases]{check}: Don't run the test
suite twice; run it once in parallel mode. Honor the number of jobs specified
via --cores, capped to 3 for memory reasons. Do not check the demos.
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* gnu/packages/simulation.scm (fullswof-2d): New variable.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/simulation.scm (fenics): Update to 2019.1.0.post0.
[arguments]: In the 'pre-check' phase, add three more demos to the
list of demos that are skipped.
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* gnu/packages/simulation.scm (fenics-dolfin): Update to 2019.1.0.post0.
[source](snippet): Remove three substitutions that are no longer needed.
[native-inputs]: Use compatible version of CATCH.
[arguments]: Use CMAKE version 3.15.5 to avoid EXCLUDE_FROM_ALL
regression. See <https://issues.guix.gnu.org/issue/38060>.
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* gnu/packages/simulation.scm (python-fenics-ffc): Update to 2019.1.0.post0.
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* gnu/packages/simulation.scm (python-fenics-fiat): Update to 2019.1.0.
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* gnu/packages/simulation.scm (python-fenics-ufl): Update to 2019.1.0.
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* gnu/packages/simulation.scm (python-fenics-dijitso): Update to 2019.1.0.
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This follows up commit 2f33a7321e5e37d37f57c229c8079cb4ffd10834 which
introduced a new CMAKE-MINIMAL variant for use in package inputs.
* gnu/packages/databases.scm (python-pyarrow)[native-inputs]: Replace CMAKE
with CMAKE-MINIMAL.
* gnu/packages/emacs-xyz.scm (emacs-scel)[native-inputs]: Likewise.
* gnu/packages/firmware.scm (ath9k-htc-firmware)[native-inputs]: Likewise.
* gnu/packages/games.scm (0ad, the-butterfly-effect)[native-inputs]: Likewise.
* gnu/packages/gnome.scm (deja-dup)[native-inputs]: Likewise.
* gnu/packages/ibus.scm (ibus-rime)[native-inputs]: Likewise.
* gnu/packages/rust.scm (rust-1.19)[native-inputs]: Likewise.
* gnu/packages/simulation.scm (fenics)[native-inputs]: Likewise.
* gnu/packages/squirrel.scm (squirrel)[native-inputs]: Likewise.
* gnu/packages/video.scm (handbrake)[native-inputs]: Likewise.
* gnu/packages/virtualization.scm (xen)[native-inputs]: Likewise.
* gnu/packages/vulkan.scm (shaderc)[native-inputs]: Likewise.
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* gnu/packages/simulation.scm (fenics-dolfin)[arguments]: Remove SNESTEST
mapping, no longer valid after update of PETSc to version 3.10.3.
Signed-off-by: Leo Famulari <leo@famulari.name>
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* gnu/packages/simulation.scm (python-fenics-dijitso)[arguments]: Skip
parallel tests.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/python.scm: Move hundreds of package definitions from here...
* gnu/packages/python-xyz.scm: ...to this new module.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/ada.scm,
gnu/packages/admin.scm,
gnu/packages/android.scm,
gnu/packages/audio.scm,
gnu/packages/backup.scm,
gnu/packages/benchmark.scm,
gnu/packages/bioinformatics.scm,
gnu/packages/bittorrent.scm,
gnu/packages/calendar.scm,
gnu/packages/check.scm,
gnu/packages/chemistry.scm,
gnu/packages/cluster.scm,
gnu/packages/compression.scm,
gnu/packages/connman.scm,
gnu/packages/crypto.scm,
gnu/packages/cups.scm,
gnu/packages/databases.scm,
gnu/packages/dav.scm,
gnu/packages/direct-connect.scm,
gnu/packages/disk.scm,
gnu/packages/django.scm,
gnu/packages/dlang.scm,
gnu/packages/docker.scm,
gnu/packages/ebook.scm,
gnu/packages/elf.scm,
gnu/packages/emacs.scm,
gnu/packages/emulators.scm,
gnu/packages/engineering.scm,
gnu/packages/enlightenment.scm,
gnu/packages/finance.scm,
gnu/packages/fltk.scm,
gnu/packages/fontutils.scm,
gnu/packages/freedesktop.scm,
gnu/packages/game-development.scm,
gnu/packages/games.scm,
gnu/packages/geo.scm,
gnu/packages/gl.scm,
gnu/packages/glib.scm,
gnu/packages/gnome.scm,
gnu/packages/gnupg.scm,
gnu/packages/gnuzilla.scm,
gnu/packages/graph.scm,
gnu/packages/graphics.scm,
gnu/packages/graphviz.scm,
gnu/packages/gtk.scm,
gnu/packages/ham-radio.scm,
gnu/packages/image-processing.scm,
gnu/packages/image-viewers.scm,
gnu/packages/image.scm,
gnu/packages/irc.scm,
gnu/packages/jrnl.scm,
gnu/packages/julia.scm,
gnu/packages/kde-frameworks.scm,
gnu/packages/key-mon.scm,
gnu/packages/libffi.scm,
gnu/packages/libreoffice.scm,
gnu/packages/libusb.scm,
gnu/packages/lirc.scm,
gnu/packages/logging.scm,
gnu/packages/machine-learning.scm,
gnu/packages/mail.scm,
gnu/packages/mate.scm,
gnu/packages/maths.scm,
gnu/packages/medical.scm,
gnu/packages/messaging.scm,
gnu/packages/monitoring.scm,
gnu/packages/mp3.scm,
gnu/packages/mpd.scm,
gnu/packages/music.scm,
gnu/packages/networking.scm,
gnu/packages/nutrition.scm,
gnu/packages/openldap.scm,
gnu/packages/openstack.scm,
gnu/packages/package-management.scm,
gnu/packages/password-utils.scm,
gnu/packages/patchutils.scm,
gnu/packages/pdf.scm,
gnu/packages/photo.scm,
gnu/packages/polkit.scm,
gnu/packages/protobuf.scm,
gnu/packages/python-crypto.scm,
gnu/packages/python-web.scm,
gnu/packages/qt.scm,
gnu/packages/rdf.scm,
gnu/packages/ruby.scm,
gnu/packages/search.scm,
gnu/packages/selinux.scm,
gnu/packages/serialization.scm,
gnu/packages/shells.scm,
gnu/packages/simulation.scm,
gnu/packages/ssh.scm,
gnu/packages/statistics.scm,
gnu/packages/storage.scm,
gnu/packages/sync.scm,
gnu/packages/terminals.scm,
gnu/packages/textutils.scm,
gnu/packages/time.scm,
gnu/packages/tls.scm,
gnu/packages/tor.scm,
gnu/packages/tryton.scm,
gnu/packages/version-control.scm,
gnu/packages/video.scm,
gnu/packages/virtualization.scm,
gnu/packages/vpn.scm,
gnu/packages/web-browsers.scm,
gnu/packages/web.scm,
gnu/packages/wicd.scm,
gnu/packages/xdisorg.scm,
gnu/packages/xorg.scm: Update module references.
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* gnu/packages/batik.scm, gnu/packages/boost.scm,
gnu/packages/calendar.scm, gnu/packages/gl.scm,
gnu/packages/lua.scm, gnu/packages/qt.scm, gnu/packages/simulation.scm,
gnu/packages/terminals.scm: Remove unnecessary import of (guix build
utils).
* gnu/packages/emacs.scm: Remove unnecessary imports of (guix ...).
* gnu/packages/libcanberra.scm: Use (srfi srfi-1) instead of (guix build
utils) for 'alist-delete'.
* gnu/packages/wxwidgets.scm: Likewise.
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* gnu/packages/simulation.scm (fenics)[arguments]: Add 'curl-curl'
demo to list of demos that require meshes supplied by git-lfs.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (openfoam)[source](modules, snippet): New
fields.
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* gnu/packages/simulation.scm (fenics): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (fenics-dolfin): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-ffc): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-fiat): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-ufl): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (python-fenics-dijitso): New varaible.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This saves ~1GB.
* gnu/packages/simulation.scm (openfoam)[outputs]: Add debug.
[arguments]: Clean up .o and src after build.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (openfoam): Put capital 'D' in 'pitzDaily'.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/simulation.scm (openfoam)[description]: Add a period to
the end of the sentence.
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*gnu/packages/patches/openfoam-4.1-cleanup.patch: New file
*gnu/packages/simulation.scm: New file
*gnu/local.mk (GNU_SYSTEM_MODULES): Add module.
(dist_patch_DATA): Add patch.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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