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2019-05-31gnu: petsc: Update to 3.11.2.Eric Bavier
* gnu/packages/maths.scm (petsc): Update to 3.11.2.
2019-05-31gnu: petsc-complex-mpi: Setup MPI for tests.Eric Bavier
* gnu/packages/maths.scm (petsc-complex-mpi)[arguments]: Add 'mpi-setup phase.
2019-05-31gnu: Add mousepad.Kei Kebreau
* gnu/packages/xfce.scm (mousepad): New variable.
2019-05-31gnu: Add zbar.Guillaume LE VAILLANT
* gnu/packages/aidc.scm (zbar): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: Add patchwork.Christopher Baines
* gnu/packages/patchutils.scm (patchwork): New variable.
2019-05-31gnu: Go 1.4: Fix typo.Leo Famulari
* gnu/packages/golang.scm (go-1.4): Fix typo in comment.
2019-05-31gnu: gtksourceview-2: Fix finding default data.Julien Lepiller
* gnu/packages/patches/gtksourceview-2-add-default-directory.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gtk.scm (gtksourceview-2)[source]: Use it.
2019-05-31gnu: php: Update to 7.3.6.Julien Lepiller
* gnu/packages/php.scm (php): Update to 7.3.6.
2019-05-31gnu: Add r-birta.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-birta): New variable.
2019-05-31gnu: Add r-birewire.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-birewire): New variable.
2019-05-31gnu: r-seriation: Update to 1.2-5.Ricardo Wurmus
* gnu/packages/cran.scm (r-seriation): Update to 1.2-5.
2019-05-31gnu: emacs-diff-hl: Update to 1.8.6.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-diff-hl): Update to 1.8.6. [source]: Fetch from git. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-helm: Update to 3.2.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-helm): Update to 3.2. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-counsel-tramp: Update to 0.6.3.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-counsel-tramp): Update to 0.6.3. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-editorconfig: Update to 0.8.0.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-editorconfig): Update to 0.8.0. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: emacs-exec-path-from-shell: Update to 1.12.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-exec-path-from-shell): Update to 1.12. [source]: Use git-fetch. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: Add emacs-reformatter.LaFreniere, Joseph
* gnu/packages/emacs-xyz.scm (emacs-reformatter): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: Add emacs-ivy-pass.Joseph LaFreniere
* gnu/packages/emacs-xyz.scm (emacs-ivy-pass): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-31gnu: kitty: Update to 0.14.1.Rutger Helling
* gnu/packages/terminals.scm (kitty): Update to 0.14.1.
2019-05-30gnu: diffoscope: Update to version 115-1.7f3416f.Vagrant Cascadian
* gnu/packages/package-management (diffoscope): [package] Update to version 115-1.7f3416f. [source] Switch to using git-fetch. [inputs] Move python-pytest and python-chardet ... [native-inputs] ... to here. [arguments] Move comment to fit line length.
2019-05-30gnu: r-biocviews: Update to 1.52.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-biocviews): Update to 1.52.1.
2019-05-30gnu: r-tibble: Update to 2.1.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-tibble): Update to 2.1.2.
2019-05-30gnu: r-dose: Update to 3.10.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-dose): Update to 3.10.1.
2019-05-30gnu: Add gthumb.Andy Tai
* gnu/packages/gnome.scm (gthumb): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net> Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2019-05-29gnu: sddm: Add QtQuick-related dependencies to sddm.Reza Alizadeh Majd
* gnu/packages/display-managers.scm (sddm): add QtQuick related dependencies to sddm package in order to `sddm-greeter` application to load user defined themes which are based on QtQuick. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-05-29gnu: r-statmod: Update to 1.4.32.Ricardo Wurmus
* gnu/packages/statistics.scm (r-statmod): Update to 1.4.32.
2019-05-29gnu: r-fields: Update to 9.8-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-fields): Update to 9.8-3.
2019-05-29gnu: r-bayestestr: Update to 0.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.2.0.
2019-05-29gnu: Use make-linux-libre-headers.Carl Dong
* gnu/packages/linux.scm (make-linux-libre-headers): New variable. (linux-libre): Rename to... (linux-libre-5.1): ...this. (linux-libre-headers): Rename to... (linux-libre-headers-4.14.67): ...this. (linux-libre-5.1, linux-libre-headers-4.14.67): Use make-linux-libre-headers. (linux-libre-5.1, linux-libre-headers-5.1, linux-libre-headers-4.19, %linux-libre-4.15-version, %linux-libre-4.15-hash, linux-libre-4.15, linux-libre-headers-4.15, linux-libre-headers-4.14): New variables. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: cross-base: Allow non-default linux-headers.Carl Dong
* gnu/packages/cross-base.scm (cross-kernel-headers): Add LINUX-HEADERS optional argument. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add basic support for riscv64-linux-gnu targets.Carl Dong
* gnu/packages/bootstrap.scm (glibc-dynamic-linker): Add "riscv64-linux". * gnu/packages/linux.scm (system->linux-architecture): Add "riscv" prefix. Signed-off-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-05-29gnu: Add childsplay.Nicolas Goaziou
* gnu/packages/education.scm (childsplay): New variable.
2019-05-29gnu: awscli: Add missing input.Ricardo Wurmus
Fixes <https://bugs.gnu.org/35980>. * gnu/packages/python-web.scm (awscli)[arguments]: Add build phase "fix-reference-to-groff". [inputs]: Add groff.
2019-05-29gnu: r-scran: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scran): Update to 1.12.1.
2019-05-29gnu: r-scater: Update to 1.12.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-scater): Update to 1.12.2.
2019-05-29gnu: r-sva: Update to 3.32.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.32.1.
2019-05-29gnu: r-genomicfeatures: Update to 1.36.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.36.1.
2019-05-29gnu: r-edger: Update to 3.26.4.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-edger): Update to 3.26.4.
2019-05-29gnu: r-variantannotation: Update to 1.30.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.30.1.
2019-05-28gnu: r-atacseqqc: Update to 1.8.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-atacseqqc): Update to 1.8.1.
2019-05-28gnu: r-icobra: Update to 1.12.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.12.1.
2019-05-28gnu: r-chippeakanno: Update to 3.18.1.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.18.1.
2019-05-28gnu: r-geosphere: Update to 1.5-10.Ricardo Wurmus
* gnu/packages/cran.scm (r-geosphere): Update to 1.5-10.
2019-05-28gnu: r-ggfortify: Update to 0.4.7.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggfortify): Update to 0.4.7.
2019-05-28gnu: r-wgcna: Update to 1.68.Ricardo Wurmus
* gnu/packages/cran.scm (r-wgcna): Update to 1.68.
2019-05-28gnu: r-bookdown: Update to 0.11.Ricardo Wurmus
* gnu/packages/cran.scm (r-bookdown): Update to 0.11. [propagated-inputs]: Add ghc-pandoc; remove r-yaml.
2019-05-28gnu: r-upsetr: Update to 1.4.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-upsetr): Update to 1.4.0.
2019-05-28gnu: r-epi: Update to 2.37.Ricardo Wurmus
* gnu/packages/cran.scm (r-epi): Update to 2.37.
2019-05-28gnu: r-etm: Update to 1.0.5.Ricardo Wurmus
* gnu/packages/cran.scm (r-etm): Update to 1.0.5.
2019-05-28gnu: r-cmprsk: Update to 2.2-8.Ricardo Wurmus
* gnu/packages/cran.scm (r-cmprsk): Update to 2.2-8.
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