Age | Commit message (Collapse) | Author |
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* gnu/packages/java.scm (icedtea7): Bootstrap with GCJ rather than compile
with IcedTea6.
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* gnu/packages/bioinformatics.scm (couger): New variable.
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* gnu/packages/machine-learning.scm (randomjungle): New variable.
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* gnu/packages/machine-learning.scm (python-libsvm): New variable.
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* gnu/packages/machine-learning.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/bioinformatics.scm (ngs-sdk): Update to version 1.1.1.
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* gnu/packages/haskell.scm (ghc)[arguments]: Rename
'unpack-and-fix-testsuite' phase to 'unpack-testsuite-and-fix-bins'.
Patch source files that reference /bin/sh.
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This reverts commit 4f467e33de0b64b1afd935d14ec6a4839e03bdfc.
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* gnu/packages/openssl.scm (openssl): Update to 1.0.2b.
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* gnu/packages/package-management.scm (guix-devel): Update to a43b55f.
[source]: Add 'file-name' field.
[native-inputs]: Add HELP2MAN.
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* guix/packages.scm (<package>)[location]: Add 'innate' property.
* guix/build-system/gnu.scm (static-package): Remove 'loc' parameter and
'location' field.
* gnu/packages/autotools.scm (autoconf-wrapper): Remove 'location' field.
* gnu/packages/commencement.scm (gnu-make-boot0, diffutils-boot0, gcc-final):
Likewise.
* gnu/packages/cross-base.scm (cross): Likewise.
* gnu/packages/emacs.scm (emacs-no-x, emacs-no-x-toolkit): Likewise.
* gnu/packages/make-bootstrap.scm (tarball-package): Likewise.
* gnu/packages/maths.scm (petsc-complex): Likewise.
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* gnu/packages/gnupg.scm (gnupg): Update to 2.1.5.
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* gnu/packages/gnome.scm (librest): New variable.
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* gnu/packages/admin.scm (inetutils): Update to 1.9.4.
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* gnu/packages/patches/qemu-CVE-2015-3209.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/qemu.scm (qemu): Add patch.
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* gnu/packages/cups.scm (cups): Update to 2.0.3.
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* gnu/packages/linux.scm (linux-libre): Update to 4.0.5.
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* gnu/packages/databases.scm (mysql): Update to 5.6.25.
[source]: Use 'version-major+minor'.
[build-system]: Change to cmake-build-system. Adjust arguments
accordingly.
[inputs]: Add libaio. Remove procps. Move perl to 'native-inputs'.
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* gnu/packages/ocaml.scm (proof-general): New variable.
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* gnu/packages/video.scm (youtube-dl): Update to 2015.06.04.1.
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* gnu/packages/gnome.scm (evince): Update to 3.16.1.
[inputs]: Add djvulibre, libtiff, gnome-desktop and libsecret.
Co-authored-by: David Hashe <david.hashe@dhashe.com>
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* gnu/packages/gnome.scm (geoclue): Update to 2.2.0.
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* gnu/packages/python.scm (python-numpy)[inputs]: Use "openblas" instead of
"atlas".
* gnu/packages/python.scm (python-numpy)[arguments]: Configure build against
OpenBLAS.
Modified-By: Mark H Weaver <mhw@netris.org>
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* gnu/packages/patches/icecat-CVE-2015-0797.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-2708-pt4.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2710-pt3.patch,
gnu/packages/patches/icecat-CVE-2015-2713-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-2713-pt2.patch,
gnu/packages/patches/icecat-CVE-2015-2716.patch: Remove files.
* gnu-system.am (dist_patch_DATA): Remove them.
* gnu/packages/gnuzilla.scm (icecat): Update to 31.7.0-gnu1. Remove patches.
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* gnu/packages/tor.scm (tor): Update to 0.2.6.8.
[native-inputs]: Add python-2.
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* gnu/packages/emacs.scm (magit-svn): New variable.
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* gnu/packages/ocaml.scm (coq): New variable.
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* gnu/packages/ocaml.scm (hevea): New variable.
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* gnu/packages/ocaml.scm (camlp5): New variable.
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* gnu/packages/ocaml.scm (ocaml)[version]: Update to 4.02.1.
[source]: Use 'version-major+minor'. Use .xz tarball.
[home-page]: Update URI.
[license]: gpl2 -> lgpl2.0.
[inputs]: Add libx11, gcc:lib, and zlib. Remove perl.
[native-inputs]: New field, with perl and pkg-config.
[arguments]: In #:modules, remove (srfi srfi-1), add (web server). Use
'modify-phases'. Enable parallel build. Add 'patch-/bin/sh-references' and
'prepare-socket-test' phases. Rename 'check-after-install' phase to
'check'. Use 'with-directory-excursion' in 'check' phase. Remove unused
keyword arguments from custom phases.
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* gnu/packages/gnome.scm (devhelp): New variable.
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* gnu/packages/gl.scm (guile-opengl)[inputs]: Add glu.
[arguments]: Patch dynamic-link call for 'libGLU' to glu instead of
mesa in the 'patch-dynamic-link' phase.
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* gnu/packages/libreoffice.scm (xmlsec-src-libreoffice, libreoffice):
New variables.
Co-authored-by: John Darrington <jmd@gnu.org>
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* gnu/packages/guile.scm (guile-reader)[source, version]: Update to 0.6.1.
[arguments]: Remove #:locale argument.
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* gnu/packages/perl.scm (perl-data-stag): New variable.
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* gnu/packages/perl.scm (perl-io-string): New variable.
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* gnu/packages/gnupg.scm (gnupg-2.0): Update to 2.0.28.
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* gnu/packages/gnu-pw-mgr.scm (gnu-pw-mgr): Update to 1.4. Use .xz tarball.
Move 'which' to native-inputs. Add 'autogen' to native-inputs.
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* gnu/packages/compression.scm (sharutils): Update to 4.15.2.
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* gnu/packages/bioinformatics.scm (htslib): New variable.
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* gnu/packages/bioinformatics.scm (ncbi-vdb)[arguments]: Copy libraries from
"linux/gcc/i386" directory instead of "linux/gcc/i686" when building on
i686.
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* gnu/packages/guile.scm (guile-gdbm-ffi): New variable.
Co-authored-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/video.scm (avidemux): Set -DCMAKE_SHARED_LINKER_FLAGS
in the call to cmake.
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Reported by Alexander Vorobiev <alexander.vorobiev@gmail.com>.
* gnu/packages/tcsh.scm (tcsh)[source]: Add alternate URL.
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* gnu/packages/ruby.scm (ruby-useragent): New variable.
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* gnu/packages/ruby.scm (bundler): New variable.
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* gnu/packages/ruby.scm (ruby-rspec): New variable.
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* gnu/packages/ruby.scm (ruby-rspec-mocks): New variable.
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* gnu/packages/ruby.scm (ruby-diff-lcs-for-rspec, ruby-rspec-expectations):
New variables.
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* gnu/packages/ruby.scm (ruby-rspec-support, ruby-rspec-core): New variables.
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