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2017-08-07gnu: texlive: Remove texlive-minimal.Leo Famulari
This package is superseded by the modular TeX Live distribution. * gnu/packages/tex.scm (texlive-minimal, texlive-texmf-minimal): Remove variables.
2017-08-07gnu: biber: Update to 2.7.Leo Famulari
* gnu/packages/tex.scm (biber)[name]: Rename to 'biber'. (biber-2.5): Remove variable.
2017-08-07gnu: texlive: Update to 2017.Leo Famulari
* gnu/packages/tex.scm (texlive, texlive-texmf): Update to 2017. (texlive-texmf-src): Update to 20170524. Remove 'texlive-texmf-CVE-2016-10243.patch'. (texlive-bin, texlive-extra-src): Update to 20170524. * gnu/packages/patches/texlive-texmf-CVE-2016-10243.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-06Merge branch 'master' into core-updatesMark H Weaver
2017-08-06gnu: libtasn1: Add replacement to fix CVE-2017-10790.Mark H Weaver
Based on commit 01a61d7040b1794f36547b107abce6e967d59f21 by Leo Famulari <leo@famulari.name>. * gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (libtasn1)[replacement]: New field. (libtasn1/fixed): New variable.
2017-08-05gnu: libtasn1: Fix CVE-2017-10790.Leo Famulari
* gnu/packages/patches/libtasn1-CVE-2017-10790.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/tls.scm (libtasn1/fixed)[source]: Use it.
2017-08-05gnu: emacs-exwm-x: Do not set DISPLAY.Feng Shu
* gnu/packages/emacs.scm (emacs-exwm-x): Do not set DISPLAY. The issue has been fixed upstream in exwm-0.15. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05gnu: emacs-exwm: Update to 0.15.Feng Shu
* gnu/packages/emacs.scm (emacs-exwm): Update to 0.15. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-08-05gnu: git: Update to 2.14.0.Marius Bakke
* gnu/packages/version-control.scm (git): Update to 2.14.0.
2017-08-05gnu: lftp: Update to 4.7.8.Marius Bakke
* gnu/packages/ftp.scm (lftp): Update to 4.7.8.
2017-08-05gnu: Add cubicle.Julien Lepiller
* gnu/packages/maths.scm (cubicle): New variable.
2017-08-05gnu: perl: Work around more "dotless @INC" build issues.Ludovic Courtès
* gnu/packages/web.scm (perl-www-curl)[arguments]: Add 'set-search-path' phase. * gnu/packages/bioinformatics.scm (ngs-sdk)[arguments]: Augment 'configure' phase to set PERL5LIB. * gnu/packages/image.scm (steghide)[arguments]: Add #:phases argument.
2017-08-05gnu: python-argcomplete: Add dependency on the full Bash.Ludovic Courtès
Fixes a regression introduced in 704243e0c6ec5ac86e2f45aaa469717e60b89124. * gnu/packages/python.scm (python-argcomplete)[native-inputs]: Add BASH.
2017-08-05gnu: bluez: Work around test failure on ARM.Ludovic Courtès
This aims to skip the segfaulting test at <https://hydra.gnu.org/build/2195551>. * gnu/packages/linux.scm (bluez)[arguments]: Add #:make-flags when (%current-system) is "armhf-linux".
2017-08-04gnu: php: Update to 7.1.8.Julien Lepiller
* gnu/packages/patches/gd-CVE-2017-7890.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it * gnu/packages/php.scm (php): Update to 7.1.8.
2017-08-04gnu: Add r-crosstalk.Ricardo Wurmus
* gnu/packages/web.scm (r-crosstalk): New variable.
2017-08-04gnu: Add r-shiny.Ricardo Wurmus
* gnu/packages/web.scm (r-shiny): New variable.
2017-08-04gnu: Add js-es5-shim.Ricardo Wurmus
* gnu/packages/javascript.scm (js-es5-shim): New variable.
2017-08-04gnu: Add js-selectize.Ricardo Wurmus
* gnu/packages/javascript.scm (js-selectize): New variable.
2017-08-04gnu: Add js-datatables.Ricardo Wurmus
* gnu/packages/javascript.scm (js-datatables): New variable.
2017-08-04gnu: Add js-highlight.Ricardo Wurmus
* gnu/packages/javascript.scm (js-highlight): New variable.
2017-08-04gnu: Add js-strftime.Ricardo Wurmus
* gnu/packages/javascript.scm (js-strftime): New variable.
2017-08-04gnu: Add js-json2.Ricardo Wurmus
* gnu/packages/javascript.scm (js-json2): New variable.
2017-08-04gnu: Add js-html5shiv.Ricardo Wurmus
* gnu/packages/javascript.scm (js-html5shiv): New variable.
2017-08-04gnu: python-lz4: Fix typo in synopsis.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (python-lz4)[synopsis]: Fix typo.
2017-08-04gnu: python-lz4: Update to 0.10.1.Tobias Geerinckx-Rice
* gnu/packages/compression.scm (python-lz4): Update to 0.10.1. [native-inputs]: Add python-setuptools-scm.
2017-08-04gnu: diffoscope: Use HTTPS.Tobias Geerinckx-Rice
* gnu/packages/package-management.scm (diffoscope)[home-page]: Use HTTPS.
2017-08-04gnu: sshoot: Update to 1.2.6.Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (sshoot): Update to 1.2.6. [home-page]: Update to new project home.
2017-08-04gnu: fabric: Update to 1.13.2.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (fabric): Update to 1.13.2. Remove outdated comments. [source]: Remove ‘patches’. * gnu/packages/patches/fabric-tests.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-08-04gnu: certbot, python-acme: Update to 0.17.0.Tobias Geerinckx-Rice
* gnu/packages/tls.scm (certbot, python-acme, python2-acme): Update to 0.17.0.
2017-08-04gnu: xonsh: Update to 0.5.12.Tobias Geerinckx-Rice
* gnu/packages/shells.scm (xonsh): Update to 0.5.12.
2017-08-04gnu: cmark: Update to 0.28.0.Tobias Geerinckx-Rice
* gnu/packages/markup.scm (cmark): Update to 0.28.0.
2017-08-04gnu: thefuck: Update to 3.19.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (thefuck): Update to 3.19.
2017-08-04gnu: zerofree: Update to 1.1.0.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree): Update to 1.1.0. [home-page, source]: Update from old, inaccessible location.
2017-08-04gnu: zerofree: Expand description.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree)[description]: Expand.
2017-08-04gnu: zerofree: Use ‘install-file’.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree)[arguments]: Simplify install phase, using ‘install-file’.
2017-08-04gnu: zerofree: Use ‘modify-phases’ syntax.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (zerofree)[arguments]: Use ‘modify-phases’.
2017-08-04gnu: sshfs-fuse: Update to 2.10.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (sshfs-fuse): Update to 2.10.
2017-08-04gnu: freerdp: Update to 2.0.0-rc0 [security fixes].Marius Bakke
Fixes CVE-2017-{2834,2835,2836,2837,2838,2839}. Reported by Leo Famulari in <https://bugs.gnu.org/27939>. * gnu/packages/rdesktop.scm (freerdp): Update to 2.0.0-rc0. [source]: Use tarball release. Adjust file-name. [arguments]: Remove #:phases.
2017-08-04gnu: git: Enable tests.Marius Bakke
* gnu/packages/version-control.scm (git)[arguments]: Remove #:tests?. Add 'patch-tests' phase.
2017-08-03gnu: gnupg@1.4: Update to 1.4.22 [fixes CVE-2017-7526].Leo Famulari
* gnu/packages/gnupg.scm (gnupg-1): Update to 1.4.22.
2017-08-03gnu: icedtea@3.5.0: Properly handle decoding error while substituting.Ludovic Courtès
* gnu/packages/java.scm (icedtea-8)[arguments] <patch-jni-libs>: Change 'encoding-error to 'decoding-error, which is what Guile 2.2 raises when failing to decode an input file.
2017-08-03gnu: Add missing references to (gnu packages cran).Ricardo Wurmus
This is a follow-up to commit a8cba9dd112528d67a946eee057c838221eb5249. Reported-by: Efraim Flashner <efraim@flashner.co.il>
2017-08-03gnu: bioinformatics.scm: Use (gnu packages cran) module.Efraim Flashner
This is a follow up to a8cba9dd112528d67a946eee057c838221eb5249. * gnu/packages/bioinformatics.scm: Add (gnu packages cran) to #:use-modules.
2017-08-03gnu: r-purrr: Update to 0.2.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r-purrr): Update to 0.2.3. [propagated-inputs]: Remove r-rcpp and r-lazyeval; add r-rlang.
2017-08-03gnu: r-desc: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-desc): Update to 1.1.1.
2017-08-03gnu: r-seqminer: Update to 6.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqminer): Update to 6.0.
2017-08-03gnu: r-wgcna: Update to 1.60.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-wgcna): Update to 1.60.
2017-08-03gnu: r-qtl: Update to 1.41-6.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-qtl): Update to 1.41-6.
2017-08-03gnu: r-seqinr: Update to 3.4-5.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seqinr): Update to 3.4-5.
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