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2020-03-28gnu: armadillo: Fix typo in description.Nicolas Goaziou
* gnu/packages/maths.scm (armadillo): Fix spaces after "eg.".
2020-03-28gnu: KOrganizer: Fix typo in description.Marius Bakke
* gnu/packages/kde-pim.scm (korganizer)[description]: clanedaring -> calendaring.
2020-03-28gnu: youtube-viewer: Add missing comment.Efraim Flashner
This is a follow-up to 315b98b9eb71e1a56de6a49ffbfed0af3c92be7e. * gnu/packages/video.scm (youtube-viewer)[arguments]: Add comment explaining why we don't install the gtk3 variant.
2020-03-28Revert "gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default."Leo Famulari
This commit didn't work: https://issues.guix.gnu.org/issue/24076#13 This reverts commit c7af9d0b5ebaa1fdb08ff5d8a56004998bcd8103.
2020-03-28gnu: pagekite: Update to 1.5.0.200327.Alex Griffin
* gnu/packages/networking.scm (pagekite): Update to 1.5.0.200327.
2020-03-28gnu: python-socksipychain: Update to 2.1.1-1.eb5ee87.Alex Griffin
* gnu/packages/python-xyz.scm (python-socksipychain): Update to 2.1.1-1.eb5ee87.
2020-03-28gnu: sbcl-cl-containers: Update to 20200212.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (sbcl-cl-containers): Update to 20200212.
2020-03-28gnu: lollypop: Update to 1.2.32.Christopher Baines
* gnu/packages/gnome.scm (lollypop): Update to 1.2.32.
2020-03-27gnu: r-curl: Fix patch to respect CURL_CA_BUNDLE.Ricardo Wurmus
Fixes <https://debbugs.gnu.org/40262>. * gnu/packages/cran.scm (r-curl)[arguments]: Ensure CURLOPT_CAINFO actually gets set.
2020-03-27gnu: grammalecte: Update to 1.8.0.Nicolas Goaziou
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.8.0.
2020-03-27gnu: fet: Update to 5.44.0.Nicolas Goaziou
* gnu/packages/education.scm (fet): Update to 5.44.0.
2020-03-27gnu: emacs-flycheck-grammalecte: Update to 1.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-flycheck-grammalecte): Update to 1.0.
2020-03-27gnu: tmate: Update to 2.4.0.Michael Rohleder
* gnu/packages/terminals.scm (tmate): Update to 2.4.0. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27gnu: Neofetch: Update to 7.0.0.Michael Rohleder
* gnu/packages/admin.scm (neofetch): Update to 7.0.0. Signed-off-by: Leo Famulari <leo@famulari.name>
2020-03-27gnu: mailutils: Update to 3.9.Ludovic Courtès
* gnu/packages/mail.scm (mailutils): Update to 3.9. [arguments]: In 'prepare-test-suite' phase, adjust name of the mda 'testsuite' files.
2020-03-27gnu: guile-next: Update to 3.0.2.Ludovic Courtès
* gnu/packages/guile.scm (guile-3.0): Update to 3.0.2. * gnu/packages/patches/guile-3.0-crash.patch: Remove. * gnu/local.mk (dist_patch_DATA): Remove it.
2020-03-27gnu: Add trivial-package-local-nicknames.Pierre Neidhardt
* gnu/packages/lisp-xyz.scm (cl-trivial-package-local-nicknames, sbcl-trivial-package-local-nicknames): New variables.
2020-03-27gnu: rust: Add 1.39Jakub Kądziołka
* gnu/packages/rust.scm (rust-1.39): New variable. (%cargo-reference-hash): Add a comment explaining the role of the variable.
2020-03-27gnu: rust: Add 1.38Jakub Kądziołka
All packages are still built with rustc 1.37, but users will see rustc 1.38 in their profiles, and packages that require newer compiler versions will be possible to add. * gnu/packages/rust.scm (rust-1.31): Factor out the patch-command-exec-tests phase to a separate procedure. (patch-command-exec-tests-phase): New procedure. (rust): Rename to rust-1.37, make rust an alias. (rust-1.38): New variable.
2020-03-27gnu: asymptote: Update to 2.65.Nicolas Goaziou
* gnu/packages/plotutils.scm (asymptote): Update to 2.65.
2020-03-27gnu: r-multiassayexperiment: Update to 1.12.6.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-multiassayexperiment): Update to 1.12.6.
2020-03-27gnu: r-locfit: Update to 1.5-9.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-locfit): Update to 1.5-9.4.
2020-03-27gnu: r-class: Update to 7.3-16.Ricardo Wurmus
* gnu/packages/statistics.scm (r-class): Update to 7.3-16.
2020-03-27gnu: r-xgboost: Update to 1.0.0.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-xgboost): Update to 1.0.0.2.
2020-03-27gnu: r-rjava: Update to 0.9-12.Ricardo Wurmus
* gnu/packages/cran.scm (r-rjava): Update to 0.9-12.
2020-03-27gnu: r-sf: Update to 0.9-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.9-0. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-bayestestr: Update to 0.5.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): Update to 0.5.3. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-hdf5r: Update to 1.3.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.3.2. [native-inputs]: Add r-knitr.
2020-03-27gnu: r-ggally: Update to 1.5.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-ggally): Update to 1.5.0.
2020-03-26gnu: guix-data-service: Update to 0.0.1-19.d1c243f.Christopher Baines
These changes support the guix-data-service-backup-database and guix-data-service-create-small-backup scripts. These are shell scripts, so require coreutils from the build environment at runtime as well as binaries from postgresql, ephemeralpg and optionally util-linux (for ionice and renice). * gnu/packages/web.scm (guix-data-service): Update to 0.0.1-19.d1c243f. [arguments]: Add (ice-9 ftw) and (ice-9 match) to #:modules, change the 'install phase to wrap all bin files with some inputs as well. [inputs]: Add util-linux, include ephemeralpg from native-inputs and switch postgresql for postgresql-11. [native-inputs]: Move ephemeralpg to inputs.
2020-03-26gnu: Add python-json5.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-json5): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26gnu: Add python-pytest-check-links.Lars-Dominik Braun
* gnu/packages/python-xyz.scm (python-pytest-check-links): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2020-03-26gnu: Add ROPgadget.Jakub Kądziołka
* gnu/packages/cybersecurity.scm: New file. (ropgadget): New variable. * gnu/local.mk (GNU_SYSTEM_MODULES): Register the file.
2020-03-26gnu: java-tomcat: Update to 8.5.53.Björn Höfling
This fixes CVE-2020-1938 ("Ghostcat"). * gnu/packages/web.scm (java-tomcat): Update to 8.5.53. [properties]: Add cpe-name.
2020-03-26gnu: icu4c: Explicitly add patch flags in replacement package.Marius Bakke
This is to prevent a build failure when this gets merged to 'core-updates' which does not have any patch-flags to inherit. * gnu/packages/icu4c.scm (icu4c/fixed)[source](patch-flags): New field.
2020-03-26gnu: help2man: Update to 1.47.13.Marius Bakke
* gnu/packages/man.scm (help2man/latest): Update to 1.47.13.
2020-03-26gnu: Add python-pywinrm.Alexandros Theodotou
* gnu/packages/python-xyz.scm (python-pywinrm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-requests_ntlm.Alexandros Theodotou
* gnu/packages/python-web.scm (python-requests_ntlm): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-ntlm-auth.Alexandros Theodotou
* gnu/packages/python-crypto.scm (python-ntlm-auth): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Add python-kerberos.Alexandros Theodotou
* gnu/packages/python-crypto.scm (python-kerberos): New variable. Signed-off-by: Christopher Baines <mail@cbaines.net>
2020-03-26gnu: Update sambamba to 0.7.1.Roel Janssen
* gnu/packages/bioinformatics.scm (sambamba): Update to 0.7.1; Remove unneeded undead input.
2020-03-26gnu: Add 7kaa.Naga Malleswari
* gnu/packages/games.scm (7kaa): New variable.
2020-03-26gnu: boinc-client: Update to 7.16.5.Efraim Flashner
* gnu/packages/distributed.scm (boinc-client): Update to 7.16.5.
2020-03-26gnu: boinc-server: Fix build.Efraim Flashner
* gnu/packages/distributed.scm (boinc-server)[inputs]: Replace openssl with openssl-1.0, mariadb with mariadb:dev.
2020-03-26gnu: gnupg: Use ~/.guix-profile/bin/pinentry by default.Ludovic Courtès
Fixes <https://bugs.gnu.org/24076>. Reported by Danny Milosavljevic <dannym@scratchpost.org>. * gnu/packages/patches/gnupg-default-pinentry.patch: New file. * gnu/packages/gnupg.scm (gnupg)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2020-03-26gnu: youtube-viewer: Don't build gtk3 front-end.Efraim Flashner
* gnu/packages/video.scm (youtube-viewer)[arguments]: Update module-build-flags to only build gtk2 front-end.
2020-03-26gnu: youtube-viewer: Update to 3.7.5.Efraim Flashner
* gnu/packages/video.scm (youtube-viewer): Update to 3.7.5. [inputs]: Add perl-json-xs.
2020-03-26gnu: emacs-helm-exwm: Update to 0.0.2.Pierre Neidhardt
* gnu/packages/emacs-xyz.scm (emacs-helm-exwm): Update to 0.0.2.
2020-03-26gnu: r-argon2: Fix case in synopsis and use full sentence in description.Ricardo Wurmus
* gnu/packages/cran.scm (r-argon2)[synopsis]: Use lower case. [description]: Use full sentence.
2020-03-26gnu: r-getpass: Change case in synopsis and adjust indentation.Ricardo Wurmus
* gnu/packages/cran.scm (r-getpass): Adjust indentation. [synopsis]: Do not capitalize all words.
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