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2023-04-22Merge remote-tracking branch 'origin/master' into core-updatesAndreas Enge
2023-04-21gnu: python-cffsubr: Depend on python-afdko@3.6.1.Ludovic Courtès
This removes the dependency of GNOME on Java: gnome -> font-abattis-cantarell -> ... -> openjdk Discussed at <https://lists.gnu.org/archive/html/guix-devel/2022-10/msg00226.html>. * gnu/packages/fontutils.scm (python-cffsubr)[inputs]: Switch to PYTHON-AFDKO-3.6.1.
2023-04-21gnu: python-afdko: Add version 3.6.1.Ludovic Courtès
* gnu/packages/fontutils.scm (python-afdko-3.6.1): New variable.
2023-04-21gnu: libotr: Fix compilation with glibc 2.35.Ludovic Courtès
* gnu/packages/messaging.scm (libotr)[source]: Add 'snippet'.
2023-04-21Revert "gnu: lxqt-admin: Fix path for timezone file."Leo Famulari
The timezone database should not be depended on by packages, but rather found at runtime in the environment. Otherwise, this package will eventually report the incorrect time, because time zones change regularly. This reverts commit 99c1c7a30c59c3514a4ced6e0cad0e5c2860331d.
2023-04-21gnu: ghc-9.0: Make testsuite compatible with Python 3.10.Lars-Dominik Braun
* gnu/packages/haskell.scm (ghc-9.0)[native-inputs]: Add patch and snippet to ghc-testsuite input.
2023-04-21gnu: guile-dsv: Update to 0.5.2.Artyom V. Poptsov
* gnu/packages/guile-xyz.scm (guile-dsv): Update to 0.5.2. [native-inputs]: Add "help2man". Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: Add emacs-gerbil-mode.Juliana Sims
* gnu/packages/emacs-xyz.scm (emacs-gerbil-mode): Add emacs-gerbil-mode. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: kicad: Update to 7.0.2.Peter Polidoro
* gnu/packages/engineering.scm (kicad): Update to 7.0.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2023-04-21gnu: kdoctools: Compile with docbook-xml@4.5.Andreas Enge
* gnu/packages/kde-frameworks.scm (kdoctools): Use docbook-xml-4.5 instead of docbook-xml.
2023-04-21gnu: freerdp: Update to 2.2.0 [security fixes].Maxim Cournoyer
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319, CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282, CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160. * gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0. [arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
2023-04-21gnu: freerdp: Update to 2.2.0 [security fixes].Maxim Cournoyer
This fixes CVE-2022-39316, CVE-2022-39317, CVE-2022-39318, CVE-2022-39319, CVE-2022-39320, CVE-2022-41877, CVE-2022-39347, CVE-2022-39282, CVE-2022-39283, CVE-2021-41159 and CVE-2021-41160. * gnu/packages/rdesktop.scm (freerdp): Update to 2.2.0. [arguments]: Use gexps. Do not set DOCBOOKXSL_DIR in #:configureflags.
2023-04-21gnu: libxml++: Remove fix-documentation phase.Maxim Cournoyer
* gnu/packages/gnome.scm (libxml++) [arguments]: Delete field.
2023-04-21gnu: opensp: Fix build.Maxim Cournoyer
This is a follow up commit to b84d0b81b2. * gnu/packages/xml.scm (opensp) [arguments]: Properly quote.
2023-04-21gnu: bppsuite: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bppsuite): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build. [inputs]: Use list. [home-page]: Changed to github page.
2023-04-21gnu: bpp-popgen: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-popgen): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21gnu: Add maffilter.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (maffilter): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2023-04-21gnu: tensorflow: Adjust for Python 3.10 compatibility.Ricardo Wurmus
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Replace build phase 'python3.9-compatibility with 'python3.10-compatibility; patch for move from "collections" to "collections.abc"; add well-meaning but potentially reckless patch to remove overwrite error for __or__ and __ror__ methods; adjust farmhash sources to build with GCC 11; do not use distutils.sysconfig.
2023-04-21gnu: python-protobuf-3.6: Patch for Python 3.10.Ricardo Wurmus
* gnu/packages/protobuf.scm (python-protobuf-3.6)[arguments]: Patch collections import. [native-inputs]: Add python-setuptools-for-tensorflow.
2023-04-21gnu: python-setuptools-for-tensorflow: Patch for Python 3.10 compatibility.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-setuptools-for-tensorflow)[arguments]: Patch collections imports; remove wininst support.
2023-04-21gnu: grpc-1.16.1: Correct input modifications.Ricardo Wurmus
abseil-cpp is not part of the native-inputs but of the inputs. * gnu/packages/rpc.scm (grpc-1.16.1)[native-inputs]: Only replace protobuf. [inputs]: Replace abseil-cpp.
2023-04-21gnu: python-grpcio: Rebuild Cythonized source files.Ricardo Wurmus
* gnu/packages/rpc.scm (python-grpcio)[source]: Delete generated cpp file. [build-system]: Use pyproject-build-system. [arguments]: Patch setup.py to add grpc headers to search path. [inputs]: Replace abseil-cpp with abseil-cpp-20211102.0; add grpc-for-python-grpcio. [native-inputs]: Add python-cython.
2023-04-21gnu: Add grpc-for-python-grpcio.Ricardo Wurmus
* gnu/packages/rpc.scm (grpc-for-python-grpcio): New variable.
2023-04-21gnu: Add abseil-cpp-20211102.0.Ricardo Wurmus
* gnu/packages/cpp.scm (abseil-cpp-20211102.0): New variable.
2023-04-21gnu: Add bpp-phyl-omics.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-phyl-omics): New variable.
2023-04-21gnu: Add bpp-seq-omics.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-seq-omics): New variable.
2023-04-21gnu: bpp-phyl: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-phyl): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build and out-of-source. [home-page]: Changed to new host Université Claude-Bernard Lyon 1. [synopsis]: Use proper capitalization.
2023-04-21gnu: bpp-seq: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-seq): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github repo. [arguments]: Remove the disabled parallel-build and out-of-source. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21gnu: bpp-core: Update to 2.4.1.Mădălin Ionel Patrașcu
* gnu/packages/bioinformatics.scm (bpp-core): Update to 2.4.1. [source]: Remove the commit and use the release version. Changed to the github stored sources. [arguments]: Remove the disabled parallel-build. [home-page]: Changed to new host Université Claude-Bernard Lyon 1.
2023-04-21gnu: luakit: Further improve style.Nicolas Goaziou
This is a followup to d3bc56da0475bc643ccb065483c53c6d28cf8e39. * gnu/packages/web-browsers.scm (luakit)[arguments]<#:phases>: Remove unnecessary INPUTS key. [inputs]: Sort alphabetically.
2023-04-21gnu: luakit: Improve package style.Nicolas Goaziou
* gnu/packages/web-browsers.scm (luakit)[arguments]<#:tests?>: Properly disable tests instead of deleting CHECK phase. <#:make-flags, #:phases>: Use G-expressions. Remove trailing #T. <#:test-targes>: Add it, for the record. [inputs]: Remove labels.
2023-04-21gnu: Add alienblaster.Yovan Naumovski
* gnu/packages/games.scm (alienblaster): New variable. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: Add clog.Antero Mejr
* gnu/packages/parallel.scm (clog): New variable. * gnu/packages/patches/clog-fix-shared-build.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: a2ps: Update to 4.15.4Andy Tai
* gnu/packages/pretty-print.scm (a2ps): Update to 4.15.4 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: kakoune: update to 2022.10.31.Eidvilas Markevičius
* gnu/packages/text-editors.scm (kakoune): Update to 2022.10.31. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: terminator: Update to 2.1.3Andy Tai
* gnu/packages/gnome.scm (terminator): Update to 2.1.3 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: wlr-randr: Update to 0.3.0.kiasoc5
* gnu/packages/wm.scm (wlr-randr): Update to 0.3.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: mpdevil: Update to 1.10.2.kiasoc5
* gnu/packages/mpd.scm (mpdevil): Update to 1.10.2. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: icewm: Update to 3.3.3.Andy Tai
* gnu/packages/wm.scm (icewm): Update to 3.3.3. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: python-txtorcon: Fix build.Brendan Tildesley
gnu/packages/python-crypto.scm (python-txtorcon): Fix build failure. [propagated-inputs]: Add PYTHON-PYOPENSSL. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: wireshark: Update to 4.0.5.Nicolas Goaziou
* gnu/packages/networking.scm (wireshark): Update to 4.0.5.
2023-04-21gnu: komikku: Update to 1.17.0.Liliana Marie Prikler
This fixes a version incompatibility with WebkitGTK. * gnu/packages/gnome.scm (komikku): Update to 1.17.0. Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: luakit: Update to 2.3.3.Raphaël Mélotte
* gnu/packages/web-browsers.scm (luakit): Update to 2.3.3 Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2023-04-21gnu: emacs-no-littering: Update to 1.3.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-no-littering): Update to 1.3.0. [propagated-inputs]: Add EMACS-COMPAT.
2023-04-21gnu: emacs-embark: Update to 0.22.1.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-embark): Update to 0.22.1.
2023-04-21gnu: emacs-elfeed-score: Build and install info documentation.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score)[arguments]<#:phases>: Add a phase to build info files. [native-inputs]: Add TEXINFO.
2023-04-21gnu: emacs-elfeed-score: Update to 1.2.5.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-elfeed-score): Update to 1.2.5.
2023-04-21gnu: emacs-doom-modeline: Update to 3.4.0.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-doom-modeline): Update to 3.4.0.
2023-04-21gnu: emacs-buttercup: Update to 1.31.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-buttercup): Update to 1.31.
2023-04-21gnu: emacs-emms: Update to 15.Nicolas Goaziou
* gnu/packages/emacs-xyz.scm (emacs-emms): Update to 15.
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