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2021-12-05gnu: java-native-access: Use older GCC.Ricardo Wurmus
* gnu/packages/java.scm (java-native-access)[native-inputs]: Add gcc-7 to fix the build.
2021-12-05gnu: java-commons-math3: Remove trailing #T.Ricardo Wurmus
* gnu/packages/java.scm (java-commons-math3)[arguments]: Remove trailing #T from build phase.
2021-12-05gnu: salmon: Remove reference to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (salmon)[arguments]: Use a gexp to remove reference to %build-inputs.
2021-12-04gnu: libhandy: Skip test that requires librsvg on non-x86_64.Ludovic Courtès
* gnu/packages/gnome.scm (libhandy)[arguments]: Add 'skip-test-that-requires-svg' phase on non-x86_64.
2021-12-04gnu: gtranslator: Update to 40.0.Ludovic Courtès
* gnu/packages/gnome.scm (gtranslator): Update to 40.0. [inputs]: Add LIBHANDY.
2021-12-04gnu: gtranslator: Fix compilation.Ludovic Courtès
* gnu/packages/gnome.scm (gtranslator)[inputs]: Replace LIBSOUP with LIBSOUP-MINIMAL-2. [arguments]: Pass #:meson.
2021-12-04gnu: libgda: Do not use the bundled sqlite.Ludovic Courtès
* gnu/packages/gnome.scm (libgda)[source]: Add snippet. [arguments]: Pass "--enable-system-sqlite". [inputs]: Add SQLITE.
2021-12-04gnu: java-commons-math3: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/java.scm (java-commons-math3)[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: java-commons-collections4: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/java.scm (java-commons-collections4)[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: java-commons-exec-1.1: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/java.scm (java-commons-exec-1.1)[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: java-commons-exec: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/java.scm (java-commons-exec)[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: maven-components-parent-pom-22: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (maven-components-parent-pom-22) [arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: java-sonatype-oss-parent-pom-9: Remove references to %build-inputs.Julien Lepiller
* gnu/packages/maven-parent-pom.scm (java-sonatype-oss-parent-pom-9) [arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: sailfish: Remove references to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sailfish)[arguments]: Use a gexp to remove references to %build-inputs.
2021-12-04gnu: sailfish: Simplify snippet.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sailfish)[source]: Remove trailing #T from snippet.
2021-12-04gnu: piranha: Remove references to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (piranha)[arguments]: Use gexp to remove references to %build-inputs.
2021-12-04gnu: piranha: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (piranha)[arguments]: Remove trailing #T from build phases.
2021-12-04gnu: emboss: Remove reference to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (emboss)[arguments]: Use gexp to remove reference to %build-inputs.
2021-12-04gnu: vcftools: Replace references to %outputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (vcftools)[arguments]: Use gexp to remove references to %outputs.
2021-12-04gnu: seqan-1: Use gexp for builder.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (seqan-1)[arguments]: Use a gexp to remove references to %build-inputs and %outputs.
2021-12-04gnu: seqan-2: Use gexp for builder.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (seqan-2)[arguments]: Use a gexp to remove references to %build-inputs and %outputs.
2021-12-04gnu: sra-tools: Remove references to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (sra-tools)[arguments]: Use a gexp instead of referencing %build-inputs.
2021-12-04gnu: preseq: Remove references to %outputs and %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (preseq)[arguments]: Replace references to %outputs and %build-inputs by using a gexp.
2021-12-04gnu: preseq: Simplify snippet.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (preseq)[source]: Simplify snippet.
2021-12-04gnu: julia-forwarddiff: Disable tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-forwarddiff)[arguments]<#:tests?>: Conditionally disable tests. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-geometrybasics: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz (julia-geometrybasics)[arguments]<#:phases>: Conditionally replace the incorrect type in test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-structarrays: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-structarrays)[arguments]<#:phases>: Conditionally replace the incorrect type in the test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-mutablearithmetics: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-mutablearithmetics)[arguments]<#:phases>: Conditionally disable the failing test. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-woodburymatrices: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-woodburymatrices)[arguments]<#:phases>: Conditionally disable the failing test. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-intervalsets: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-intervalsets)[arguments]<#:phases>: Conditionally disable the failing test. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-reversediff: Disable tests on i686-linux.zimoun
* gnu/packages/julia-xyz (julia-reversediff)[arguments]<#:tests?>: Conditionally disable tests. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-interpolations: Disable tests in i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-interpolations)[arguments]<#:tests?>: Conditionally disable tests. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-arrayinterface: Disable tests for i686.zimoun
* gnu/packages/julia-xyz.scm (julia-arrayinterface)[arguments]<#:tests?>: Conditionally disable tests. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-mappedarrays: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-mappedarrays)[arguments]<#:phases>: Conditionally replace the incorrect type in test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-blockarrays: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-blockarrays)[arguments]<#:phases>: Conditionally replace the incorrect type in test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-lazyarrays: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-lazyarrays)[arguments]<#:phases>: Conditionally replace the incorrect type in test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-configurations: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-configurations)[arguments]<#:phases>: Conditionally replace the incorrect type in test suite. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-finitedifferences: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz (julia-finitedifferences)[arguments]<#:phases>: Conditionnally disable the failing test. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-benchmarktools: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-benchmarktools)[arguments]<#:phases>: Conditionnally disable the failing tests. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: julia-datastructures: Fix tests on i686-linux.zimoun
* gnu/packages/julia-xyz.scm (julia-datastructures)[arguments]<#:phases>: Conditionnally disable the failing test. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: libunwind-julia: Fix build on i686-linux.zimoun
* gnu/packages/julia.scm (libunwind)[origin]<patches>: Add patch. * gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: New file. * gnu/local/mk (dist_patch_DATA): Register it. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04gnu: plink-ng: Enable tests.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (plink-ng)[arguments]: Replace 'check phase to run tests; do not disable tests via arguments. [native-inputs]: Add diffutils, plink, and python.
2021-12-04gnu: plink-ng: Replace reference to %outputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (plink-ng)[arguments]: Remove reference to %outputs by using a gexp.
2021-12-04gnu: plink: Remove reference to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (plink)[arguments]: Use a gexp to replace reference to %build-inputs.
2021-12-04gnu: plink: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (plink)[arguments]: Remove trailing #T from build phase.
2021-12-04gnu: rsem: Update to 1.3.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem): Update to 1.3.3. [arguments]: Build with gnu++11 standard; patch sources for compatibility.
2021-12-04gnu: rsem: Remove trailing #T.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem)[arguments]: Remove trailing #T from build phases.
2021-12-04gnu: rsem: Remove references to %build-inputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem)[arguments]: Use a gexp.
2021-12-04gnu: rsem: Remove trailing #T from snippet.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (rsem)[source]: Remove trailing #T.
2021-12-04gnu: prodigal: Remove reference to %outputs.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (prodigal)[arguments]: Remove reference to %outputs by using a gexp.
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