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The changes to linux-libre-*.conf are by Jason Self <j@jxself.org>.
* gnu/packages/patches/linux-libre-libreboot-fix.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/linux.scm (linux-libre): Update to version 3.19.3.
Add patch.
* gnu/packages/linux-libre-i686.conf,
gnu/packages/linux-libre-x86_64.conf: Update for 3.19.x.
Co-Authored-By: Jason Self <j@jxself.org>
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* gnu/packages/bioinformatics.scm (clustal-omega): New variable.
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* gnu/packages/popt.scm (argtable): New variable.
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* gnu/packages/patches/pulseaudio-longer-test-timeout.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
* gnu/packages/pulseaudio.scm (pulseaudio)[source]: Add patch.
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* gnu/packages/xorg.scm (xterm): Update to 317.
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* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[inputs]: Add missing
runtime inputs.
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* gnu/packages/bioinformatics.scm (pbtranscript-tofu)[arguments]: Delete
"build" directory and any shared objects after unpacking.
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* gnu/packages/python.scm (python-networkx, python2-networkx): New variables.
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* gnu/packages/python.scm (python-decorator, python2-decorator): New
variables.
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* gnu/packages/bioinformatics.scm (vcftools): New variable.
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* gnu/packages/bioinformatics.scm (cutadapt): New variable.
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* gnu/packages/messaging.scm (ngircd): Overwrite getpid.sh with a more
reliable version.
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* gnu/packages/graphics.scm: Add copyright line for 87bafa0.
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This reverts commit 41fd23334d9932c978579576fd86c5f89894c015.
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* gnu/packages/audacity.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
* gnu/packages/patches/audacity-fix-ffmpeg-binding.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/audio.scm (portaudio): Add a patch for Audacity compatibility.
* gnu/packages/patches/portaudio-audacity-compat.patch: New file.
* gnu-system.am (dist_patch_DATA): Add it.
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* gnu/packages/base.scm (tzdata): Update to 2015b.
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* gnu/packages/video.scm (liba52)[arguments]: Pass --build to configure.
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* gnu/packages/xdisorg.scm (xbindkeys)[arguments]: Pass --build to
configure.
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* gnu/packages/search.scm (libtocc, tocc): New variables.
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* gnu/packages/databases.scm (unqlite): New variable.
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* gnu/packages/check.scm (catch-framework): New variable.
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* gnu/packages/linux.scm (linux-libre): Update to version 3.18.10.
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* gnu/packages/video.scm (mpv): New variable.
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* gnu/packages/video.scm (vapoursynth): New variable.
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* gnu/packages/ocr.scm (tesseract-ocr): New variable.
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* gnu/packages/ocrad.scm: Deleted.
* gnu/packages/ocr.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Change ocrad.scm to ocr.scm.
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* gnu/packages/image.scm (leptonica): New variable.
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* gnu/packages/image.scm (libwebp): New variable.
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* gnu/packages/gl.scm (freeglut): Add mesa to propagated inputs.
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* gnu/packages/video.scm (libva): New variable.
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* gnu/packages/admin.scm (wpa-supplicant): Install DBUS configuration file.
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* gnu/packages/code.scm (global): Update to 6.4.
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* gnu/packages/tor.scm (tor): Update to 0.2.5.11.
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* gnu/packages/nano.scm (nano): Update to 2.4.0.
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* gnu/packages/lirc.scm: New file.
* gnu/packages/patches/lirc-localstatedir.patch: New file.
* gnu-system.am: Add them.
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* gnu/packages/ibus.scm: New file.
* gnu-system.am (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/maths.scm (openblas)[arguments]: Add "DYNAMIC_ARCH=1" to
make flags. Remove "#:substitutable? #f".
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* gnu/packages/ssh.scm (openssh): Update to 6.8p1. Make 'patch-tests'
substitution more robust.
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* gnu/packages/gnome.scm (gnome-mines): New variable.
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* gnu/packages/patches/icecat-CVE-2015-0817.patch,
gnu/packages/patches/icecat-CVE-2015-0818-pt1.patch,
gnu/packages/patches/icecat-CVE-2015-0818-pt2.patch,
gnu/packages/patches/icecat-bug-1127780.patch,
gnu/packages/patches/icecat-bug-1144991.patch,
gnu/packages/patches/icecat-bug-1145870.patch,
gnu/packages/patches/icecat-bug-1146339.patch: New files.
* gnu-system.am (dist_patch_DATA): Add them.
* gnu/packages/gnuzilla.scm (icecat): Add patches.
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* gnu/packages/python.scm (python-2): Add rpath for lib directory of output to
LDFLAGS. Remove 'patchelf' from inputs. Remove #:modules and
#:imported-modules from arguments. Remove 'add-lib-to-runpath' phase.
(python): Do not add #:modules to inherited package arguments.
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* gnu/packages/patches/calibre-no-updates-dialog.patch: New file.
* gnu-system.am (dist_patch_DATA): Register patch.
* gnu/packages/ebook.scm (calibre): Use patch.
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* gnu/packages/bioinformatics.scm (pbtranscript-tofu): New variable.
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* gnu/packages/bioinformatics.scm (python2-bx-python): New variable.
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* gnu/packages/bioinformatics.scm (python2-pbcore): New variable.
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* gnu/packages/package-management.scm (guix-devel): Update.
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* gnu/packages/emacs.scm (geiser)[description]: Tweak.
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* gnu/packages/emacs.scm (geiser): Update to 0.7.
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* gnu/packages/maths.scm (lapack, gmsh), gnu/packages/ssh.scm (libssh): Remove
unused patchelf from native-inputs.
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