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2017-03-10gnu: hmmer: Build reproducibly.Ben J. Woodcroft
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10gnu: Add sambamba.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
2017-03-10gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].Leo Famulari
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-09gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.ng0
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet' and '--with-lmdb'. [inputs]: Add 'lmdb' and 'kyotocabinet'. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: neomutt: Update to 20170306.ng0
* gnu/packages/mail.scm (neomutt): Update to 20170306. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."ng0
'kyotocabinet' is more current than tokyocabinet in development and supported in neomutt aswell. This reverts commit ef91e2b964ec0952698dd1bf7daf76624fed2145. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: hiawatha: Adjust description.ng0
* gnu/packages/web.scm (hiawatha)[description]: Adjust it. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: Add font-tamzen.ng0
* gnu/packages/fonts.scm (font-tamzen): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: btrfs-progs/static: Correct description.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct name of the btrfs-progs package and @command{} mark-up.
2017-03-09gnu: btrfs-progs: Update to 4.10.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09gnu: ibus-anthy: Update to 1.5.9.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09gnu: ibus: Update to 1.5.15.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09gnu: pius: Update to 2.2.4.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09gnu: youtube-dl: Update to 2017.03.07.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09gnu: graphicsmagick: Build with 16 bit quantum depth.Arun Isaac
Octave requires graphicsmagick to be built with 16 bit quantum depth. * gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add "--with-quantum-depth=16" and "--enable-quantum-library-names" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: octave: Build with curl and graphicsmagick.Arun Isaac
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: xf86-input-libinput: Update to 0.25.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09gnu: Add python2-larch.Arun Isaac
* gnu/packages/python.scm (python2-larch): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-tracing.Arun Isaac
* gnu/packages/python.scm (python2-tracing): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-ttystatus.Arun Isaac
* gnu/packages/python.scm (python2-ttystatus): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-cliapp.Arun Isaac
* gnu/packages/python.scm (python2-cliapp): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: python-numpy-documentation: Use full git commit hash in submodule.Marius Bakke
* gnu/packages/python.scm (python-numpy-documentation, python2-numpy-documentation)[native-inputs]: Update hash of SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09gnu: Remove obsolete numpy comment.Marius Bakke
* gnu/packages/python.scm: Remove comment.
2017-03-09gnu: inetutils: Disable parallel tests.Marius Bakke
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09gnu: python-pandas: Really fix build on 32bit.Marius Bakke
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion with same-named test.
2017-03-09gnu: Add rsnapshot.Thomas Danckaert
* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09gnu: python-fake-factory: Add back missing patch file.Mark H Weaver
This reverts the removal of "python-fake-factory-fix-build-32bit.patch" by commit ce7911ddae5d30ba73c8c9552b7d4e71268e5db3. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-03-09gnu: inetutils: Set the $localstatedir.Leo Famulari
This is a followup to commit 6f5d28f9d05aaa9743b3aac6bceb2c6323122d2d. * gnu/packages/admin.scm (inetutils)[arguments]: Pass '--localstatedir=/var' to #:configure-flags.
2017-03-09gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.Mark H Weaver
Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402, CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and CVE-2017-5410. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr45 repository.
2017-03-09gnu: icecat: Update to 45.7.0-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches included in 45.7.0.
2017-03-09gnu: r: Remove obsolete configure flags.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09gnu: r: Update to 3.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.3.
2017-03-08gnu: Add lensfun.Roel Janssen
* gnu/packages/photo.scm (lensfun): New variable.
2017-03-08gnu: Add guile2.2-haunt.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-haunt): New variable.
2017-03-08gnu: Add guile2.2-reader.Ludovic Courtès
* gnu/packages/guile.scm (guile2.2-reader): New variable.
2017-03-08gnu: guile-reader: Update to 0.6.2.Ludovic Courtès
* gnu/packages/guile.scm (guile-reader): Update to 0.6.2. [arguments]: Remove.
2017-03-08gnu: Remove unneeded imports.Ludovic Courtès
* gnu/packages/backup.scm: Remove unneeded (guix build utils) import. * gnu/packages/finance.scm: Likewise.
2017-03-08gnu: inetutils: Enable tests.Maxim Cournoyer
* gnu/packages/admin.scm (inetutils)[arguments]: Remove '#:tests? #f' and #:configure-flags. [native-inputs]: Add net-tools. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-08gnu: python-pandas: Fix build on 32-bit.Marius Bakke
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/python.scm (python-pandas, python2-pandas): Use it.
2017-03-08gnu: Add python-faker.Marius Bakke
* gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: Adjust paths. Also rename to ... * gnu/packages/patches/python-faker-fix-build-32bit.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/python.scm (python-faker, python2-faker): New variables. (python-fake-factory)[properties]: Superseded by PYTHON-FAKER. (python2-fake-factory)[properties]: Superseded by PYTHON2-FAKER. (python-orator, python2-orator)[propagated-inputs]: Replace PYTHON-FAKE-FACTORY with PYTHON-FAKER.
2017-03-08gnu: python-matplotlib-documentation: Fix build.Thomas Danckaert
* gnu/packages/python.scm (python-matplotlib-documentation)[native-inputs]: Add python-mock and graphviz. [arguments]: Use separate build and install phases; correctly set latex paper size. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-08gnu: iperf: Update to 3.1.7.Marius Bakke
* gnu/packages/networking.scm (iperf): Update to 3.1.7.
2017-03-08gnu: libinput: Update to 1.6.3.Marius Bakke
* gnu/packages/freedesktop.scm (libinput, libinput-minimal): Update to 1.6.3.
2017-03-08gnu: r: Fix more reproducibility problems.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Patch locations in the build system that need special treatment for reproducibility.
2017-03-08gnu: r: Fix syntax for INSTALL_OPTS.Ricardo Wurmus
This is a follow-up to commit 4621acfd8272fa93d0530faa5f015b26a194b587. * gnu/packages/statistics.scm (r)[arguments]: Ensure that "--built-timestamp" appears on the same line as the other INSTALL_OPTS.
2017-03-07gnu: bash: Use the bootstrap Guile in 'url-fetch/reset-patch-level'.Ludovic Courtès
Fixes <http://bugs.gnu.org/25775>. Reported by Sirgazil, Ricardo Wurmus, Andy Wingo, and others. * guix/download.scm (in-band-download): Always use GUILE. This reverts 9f05908fb1e3707cae593d94688748294717a546. * gnu/packages/bash.scm (url-fetch/reset-patch-level): Remove #:guile. Pass %BOOTSTRAP-GUILE as #:guile to 'url-fetch'. Remove #:guile-for-build argument in 'gexp->derivation' call.
2017-03-07gnu: kdevelop: Upgrade to 5.0.4.Thomas Danckaert
* gnu/packages/kde.scm (kdevelop, kdevplatform): Upgrade to 5.0.4. (kdevplatform)[source]: Use kde mirror instead of github. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-07gnu: pcre2: Update to 10.23.Marius Bakke
* gnu/packages/pcre.scm (pcre2): Update to 10.23. [source]: Remove patch. [arguments]: Add phase to substitute /bin/echo reference. * gnu/packages/patches/pcre2-CVE-2016-3191.patch: Delete file. * gnu/local.mk (dist_patch_DATA): Remove it.
2017-03-07gnu: khal: Update to 0.9.3.Leo Famulari
* gnu/packages/calendar.scm (khal): Update to 0.9.3. [native-inputs]: Use python-pytest-2.9.2.
2017-03-07gnu: gnupg: Update to 2.1.19.Leo Famulari
* gnu/packages/gnupg.scm (gnupg): Update to 2.1.19. [arguments]: Add 'patch-test-paths' phase and remove 'set-gnupg-home' phase. Add '--enable-gnupg-builddir-envvar' to #:configure-flags. [source]: Add 'gnupg-2.1-fix-Y2038-test-failure.patch'. * gnu/packages/patches/gnupg-2.1-fix-Y2038-test-failure.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
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