Age | Commit message (Collapse) | Author |
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* gnu/packages/video.scm (libva): Update to 1.8.2.
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* gnu/packages/gnome.scm (gjs): Update to 1.48.3.
[source]: Remove snippet.
[arguments]: Disable failing tests.
[propagated-inputs]: Use mozjs-38 instead of mozjs-24; add cairo.
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* gnu/packages/glib.scm (gobject-introspection): Update to 1.52.1.
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* gnu/packages/bioinformatics.scm (fraggenescan): Update to 1.30.
[arguments]: Update patching of paths, install procedure. Add new test
case.
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* gnu/packages/bioinformatics.scm (roary): Update to 3.8.2.
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* gnu/packages/bioinformatics.scm (taxtastic): Update to 0.6.4.
[source]: Use PyPI URI.
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* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Update to 1.2.1.
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* gnu/packages/video.scm (v4l-utils): Update to 1.12.5.
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* gnu/packages/video.scm (x265): Update to 2.4.
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* gnu/packages/video.scm (vlc): Update to 2.2.5.1.
[source]: Remove obsolete snippet.
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* gnu/packages/video.scm (libaacs): Update to 0.9.0.
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* gnu/packages/bioinformatics.scm (diamond): Update to 0.9.0.
[license]: Change to AGPL3+.
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* gnu/packages/bioinformatics.scm (fasttree): Update to 2.1.10.
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* gnu/packages/bioinformatics.scm (python-biom-format): Update to 2.1.6.
[propagated-inputs]: Add python-pandas.
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* gnu/packages/python.scm (python-future): Update to 0.16.0.
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* gnu/packages/security-token.scm (ccid): Update to 1.4.27.
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* gnu/packages/benchmark.scm (fio): Update to 2.20.
[arguments]<#:phases>: Drop removed script from 'move-outputs' phase.
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* gnu/packages/nano.scm (nano): Update to 2.8.4.
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* gnu/packages/vim.scm (vim, vim-full): Update to 8.0.0600.
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* gnu/packages/vim.scm (vim-full)[arguments]<#:phases>: Add substitution.
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* gnu/packages/linux.scm (%linux-libre-version): Update to 4.11.2.
(%linux-libre-hash): Update hash.
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This removes support for the "shared memory communications over RDMA" (SMC-R)
networking protocol, which was added in 4.11 without the knowledge of the RDMA
maintainers, and which is thought to contain significant security flaws. For
details, see <https://lwn.net/Articles/723081> and
<https://lwn.net/Articles/723070>.
* gnu/packages/aux-files/linux-libre/4.11-x86_64.conf,
gnu/packages/aux-files/linux-libre/4.11-i686.conf: Disable CONFIG_SMC.
723# 0001-gnu-libevent-2.0-Add-fix-from-upstream.patch
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* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.29.
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* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.69.
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This avoids pulling in glibc & co. Fixes a regression introduced in
2f861edf5cf5118ad560737343312c9a5efe5b2f (the 'unionfsctl' executable
did not exist in unionfs-fuse 0.26).
* gnu/packages/linux.scm (unionfs-fuse/static)[arguments]
<post-install>: Remove 'unionfsctl' binary.
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* gnu/packages/ghostscript.scm (ghostscript): Add comment.
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* gnu/packages/patches/jbig2dec-CVE-2017-7885.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7975.patch,
gnu/packages/patches/jbig2dec-CVE-2017-7976.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/image.scm (jbig2dec)[source]: Use them.
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* gnu/packages/security-token.scm (pcsc-lite): Update to 1.8.21.
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* gnu/packages/java.scm (icedtea-8)[native-inputs]: Add aarch32-drop.
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Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-8): Update to 3.4.0.
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* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.8-6.
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* gnu/packages/package-management.scm (guile2.0-guix): New variable.
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* gnu/packages/ssh.scm (libssh)[outputs]: New field.
(guile-ssh)[outputs]: New field.
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Fixes CVE-2017-{3509,3511,3512,3514,3526,3533,3539,3544}.
* gnu/packages/java.scm (icedtea-7): Update to 2.6.10.
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* gnu/packages/shells.scm (loksh): New variable.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ssh.scm (dropbear): Update to 2017.75.
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* gnu/packages/ebook.scm (calibre)[arguments]<#:phases>. Add 'patch-source' phase.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebook.scm (calibre): Add exhaustive license list.
(chmlib)[license]: Use license: prefix.
Co-authored-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebook.scm (calibre)[inputs]: Add poppler, python2-dnspython,
and python2-pygments.
[arguments]: Remove old TODO comments. libwmf and psutil are no longer used.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebook.scm (calibre)[source]: Delete bundled chardet.
[inputs]: Add python2-chardet.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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*gnu/packages/ebook.scm (calibre)[source]: Delete liberation .ttf files.
[native-inputs]: Add font-liberation.
[arguments]: Calibre still references the bundled fonts, so we install the
packaged fonts to the directory the bundled fonts would have been.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebook.scm (calibre)[snippet]: Replace python references to
bundled markdown with packaged. Remove markdown from source.
[inputs]: Add python2-markdown as a dependency.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebook.scm (calibre)[source]: Reference new patch file.
[inputs]: Add python2-feedparser as an input.
* gnu/packages/patches/calibre-use-packaged-feedparser.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/patches/calibre-dont-load-remote-icons.patch: New file.
* gnu/packages/ebooks.scm (calibre)[source]: Add reference to patch file.
* gnu/local.mk (dist_path_DATA): Add it.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/ebooks.scm (calibre): Update to 2.85.1.
* gnu/packages/patches/calibre-drop-unrar.patch: Delete incompatible patch
file. Recreate debian patch file from the latest calibre git revision.
Signed-off-by: Marius Bakke <mbakke@fastmail.com>
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* gnu/packages/qt.scm (python-pyqt-4): Update to 4.12.
[source]: Adjust URI to file rename.
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* gnu/packages/qt.scm (python-pyqt): Update to 5.8.2.
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* gnu/packages/qt.scm (python-sip): Update to 4.19.2.
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Fixes <http://bugs.gnu.org/26976>.
Reported by Mark H Weaver <mhw@netris.org>.
* gnu/packages/patches/guile-ssh-double-free.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ssh.scm (guile-ssh)[source](patches): Add it.
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