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2019-04-28Merge branch 'staging'Ludovic Courtès
2019-04-27gnu: gnome-shell: Add gdk-pixbuf+svg to inputs.Ricardo Wurmus
* gnu/packages/gnome.scm (gnome-shell)[inputs]: Add gdk-pixbuf+svg.
2019-04-27gnu: r-rhtslib: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-rhtslib)[arguments]: Add "--no-staged-install" to configure flags.
2019-04-27gnu: r-ggbio: Fix build.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-ggbio)[arguments]: Add build phase to patch out typo.
2019-04-27gnu: r-sjplot: Update to 2.6.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjplot): Update to 2.6.3. [propagated-inputs]: Add r-bayestestr, r-insight, and r-performance.
2019-04-27gnu: Add r-performance.Ricardo Wurmus
* gnu/packages/cran.scm (r-performance): New variable.
2019-04-27gnu: Add r-bayestestr.Ricardo Wurmus
* gnu/packages/cran.scm (r-bayestestr): New variable.
2019-04-27gnu: guix: Update to 0c329bf.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 0c329bf.
2019-04-27gnu: ocaml-qtest: Update to 2.9.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-qtest): Update to 2.9. [source]: Use git-fetch. [build-system]: Use dune-build-system.
2019-04-27gnu: ocaml-ezjsonm: Update to 1.1.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ezjsonm): Update to 1.1.0.
2019-04-27gnu: ocaml-re: Update to 1.9.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-re): Update to 1.9.0. (ocaml-uri): Fix build.
2019-04-27gnu: ocaml-csv: Update to 2.2.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-csv): Update to 2.2. [source]: Use git-fetch. [build-system]: Use dune-build-system.
2019-04-27gnu: ocaml-spawn: Update to 0.13.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-spawn): Update to 0.13.0.
2019-04-27gnu: bubblewrap: Fix Texinfo markup in description.Ludovic Courtès
Fixes a regression introduced in 7ecd1761a236a2256e420032d561aa6c372d95a8. * gnu/packages/virtualization.scm (bubblewrap): Fix typo.
2019-04-27gnu: gajim: Update to 1.1.3.Clément Lassieur
* gnu/packages/messaging.scm (gajim): Update to 1.1.3.
2019-04-27gnu: python-nbxmpp: Update to 0.6.10.Clément Lassieur
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.6.10.
2019-04-27gnu: r-quadprog: Update to 1.5-6.Ricardo Wurmus
* gnu/packages/maths.scm (r-quadprog): Update to 1.5-6.
2019-04-27gnu: r-caret: Update to 6.0-84.Ricardo Wurmus
* gnu/packages/statistics.scm (r-caret): Update to 6.0-84.
2019-04-27gnu: r-fpc: Update to 2.1-11.2.Ricardo Wurmus
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.2.
2019-04-27gnu: r-rngtools: Update to 1.3.1.1.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rngtools): Update to 1.3.1.1.
2019-04-27gnu: r-mass: Update to 7.3-51.4.Ricardo Wurmus
* gnu/packages/statistics.scm (r-mass): Update to 7.3-51.4.
2019-04-27gnu: r-boot: Update to 1.3-22.Ricardo Wurmus
* gnu/packages/statistics.scm (r-boot): Update to 1.3-22.
2019-04-27gnu: r-sf: Update to 0.7-4.Ricardo Wurmus
* gnu/packages/cran.scm (r-sf): Update to 0.7-4.
2019-04-27gnu: r-classint: Update to 0.3-3.Ricardo Wurmus
* gnu/packages/cran.scm (r-classint): Update to 0.3-3. [propagated-inputs]: Add r-kernsmooth.
2019-04-27gnu: r-survey: Update to 3.36.Ricardo Wurmus
* gnu/packages/cran.scm (r-survey): Update to 3.36. [propagated-inputs]: Add r-mitools.
2019-04-27gnu: r-ordinal: Update to 2019.4-25.Ricardo Wurmus
* gnu/packages/cran.scm (r-ordinal): Update to 2019.4-25.
2019-04-27gnu: Add r-mitools.Ricardo Wurmus
* gnu/packages/cran.scm (r-mitools): New variable.
2019-04-27gnu: mozjs-38: Fix URI.Clément Lassieur
* gnu/packages/gnuzilla.scm (mozjs-38): Fix URI.
2019-04-27gnu: wine-staging: Update to 4.7.Rutger Helling
* gnu/packages/wine.scm (wine-staging-patchset-data): Update to 4.7. * gnu/packages/wine.scm (wine-staging): Update to 4.7.
2019-04-26gnu: ocaml-ppxlib: Update to 0.6.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppxlib): Update to 0.6.0. (dune): Update to 1.9.1.
2019-04-26gnu: ocaml-migrate-parsetree: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-migrate-parsetree)[properties]: New field.
2019-04-26gnu: ocaml-ppx-expect: Update to 0.12.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppx-inline-test): Update to 0.12.0. (ocaml-ppx-expect): Update to 0.12.0.
2019-04-26gnu: ocaml-frontc: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-frontc)[properties]: New field.
2019-04-26gnu: ocaml-ppx-tools: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppx-tools)[properties]: New field.
2019-04-26gnu: ocaml-lwt-log: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-lwt-log)[properties]: New field.
2019-04-26gnu: ocaml-ppx-tools-versioned: Add upstream-name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppx-tools-versioned)[properties]: New field.
2019-04-26gnu: ocaml-compiler-libs: Add upstream name.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-compiler-libs)[properties]: New field.
2019-04-26gnu: ocaml-ppx-derivers: Update to 1.2.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-ppx-derivers): Update to 1.2.1.
2019-04-26gnu: ocaml-pcre: Update to 7.4.1.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-pcre): Update to 7.4.1. [build-system]: Use dune-build-system. [source]: Use git-fetch.
2019-04-26gnu: ocaml-stringext: Update to 1.5.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-stringext): Update to 1.5.0. [source]: Use git-fetch. [build-system]: Use dune-build-system.
2019-04-26gnu: ocaml-zarith: Update to 1.7.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-zarith): Update to 1.7. [source]: Use git-fetch.
2019-04-26gnu: ocaml-topkg: Update to 1.0.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-topkg): Update to 1.0.0.
2019-04-26gnu: ocaml-mtime: Update to 1.1.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-mtime): Update to 1.1.0.
2019-04-26gnu: ocaml-qcheck: Update to 0.9.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.9.
2019-04-26gnu: r-with-tests: Update to 3.6.0.Ricardo Wurmus
* gnu/packages/statistics.scm (r-with-tests): Update to 3.6.0. [arguments]: Adjust "build-reproducibly" phase. [native-inputs]: Add a texlive-union consisting of texlive-fonts-amsfonts, texlive-fonts-ec, texlive-latex-amsfonts, texlive-latex-base, texlive-latex-fancyvrb, texlive-latex-graphics, texlive-latex-hyperref, texlive-latex-oberdiek, texlive-latex-tools, texlive-latex-upquote, and texlive-latex-url.
2019-04-26gnu: Add umi-tools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (umi-tools): New variable.
2019-04-26gnu: gdm: Install a placeholder desktop entry.Timothy Sample
This fixes <https://bugs.gnu.org/35068>. * gnu/packages/gnome.scm (gdm)[arguments]: Add a phase that installs a placeholder desktop entry file. Co-authored-by: Danny Milosavljevic <dannym@scratchpost.org>
2019-04-26gnu: MPD: Update to 0.21.8.Leo Famulari
* gnu/packages/mpd.scm (mpd): Update to 0.21.8.
2019-04-26gnu: mame: Update to 0.209.Nicolas Goaziou
* gnu/packages/emulators.scm (mame): Update to 0.209.
2019-04-26gnu: ocaml-integers: Update to 0.3.0.Julien Lepiller
* gnu/packages/ocaml.scm (ocaml-integers): Update to 0.3.0.
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