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2018-10-05gnu: Add ghc-pqueue.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-pqueue): New variable.
2018-10-05gnu: Add ghc-bzlib-conduit.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-bzlib-conduit): New variable.
2018-10-05gnu: Add ghc-lzma-conduit.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-lzma-conduit): New variable.
2018-10-05gnu: Add ghc-bindings-dsl.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-bindings-dsl): New variable.
2018-10-05gnu: Add ghc-stm-conduit.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-stm-conduit): New variable.
2018-10-05gnu: Add ghc-lzma.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-lzma): New variable.
2018-10-05gnu: Add ghc-cereal-conduit.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-cereal-conduit): New variable.
2018-10-05gnu: Add ghc-atomic-write.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-atomic-write): New variable.
2018-10-05gnu: Add ghc-chart-cairo.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-chart-cairo): New variable.
2018-10-05gnu: Add ghc-cairo.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-cairo): New variable.
2018-10-05gnu: ghc-regex: Fix build.Ricardo Wurmus
* gnu/packages/haskell.scm (ghc-regex)[arguments]: Add build phase to relax version checks.
2018-10-05gnu: ghc-http-conduit: Remove ghc-http-client from native-inputs.Ricardo Wurmus
* gnu/packages/haskell-web.scm (ghc-http-conduit)[native-inputs]: Remove ghc-http-client.
2018-10-05gnu: ruby-sass: Update to 3.6.0.Christopher Baines
* gnu/packages/ruby.scm (ruby-sass)[version]: Update to 3.6.0. [source]: Update sha256. [native-inputs]: Add ruby-mathn, as this is needed when using Ruby 2.5.
2018-10-05gnu: Add ruby-mathn.Christopher Baines
* gnu/packages/ruby.scm (ruby-mathn): New variable.
2018-10-05gnu: ruby-sass-spec: Fix spec expectation.Christopher Baines
This fixes building ruby-sass with Ruby 2.5. * gnu/packages/ruby.scm (ruby-sass-spec)[arguments]: Add patch-test phase to fix the expectation of one of the tests. Also change the comment regarding the tests not being run.
2018-10-05gnu: ruby-term-ansicolor: Fix test for Ruby 2.5.Christopher Baines
* gnu/packages/ruby.scm (ruby-term-ansicolor)[arguments]: Add new fix-test phase to fix a test that fails under Ruby 2.5.
2018-10-05gnu: ruby-shindo: Remove -rubygems flags.Christopher Baines
These have been removed in Ruby 2.5. * gnu/packages/ruby.scm (ruby-shindo)[arguments]: Change fix-tests phase to also remove the -rubygems flags.
2018-10-05gnu: bioruby: Update to 1.5.2.Christopher Baines
This works with Ruby 2.5. * gnu/packages/bioinformatics.scm (bioruby): Update to 1.5.2.
2018-10-05gnu: gnucash-docs: Update to 3.3.Kei Kebreau
The documentation on SourceForge is now located in the same directory as the source code. * gnu/packages/gnucash.scm (gnucash-docs): Update to 3.3.
2018-10-05gnu: gnucash: Update to 3.3.Kei Kebreau
* gnu/packages/patches/gnucash-disable-failing-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it. * gnu/packages/gnucash.scm (gnucash): Update to 3.3. [source]: Add patch. [arguments]: Add 'set-env-vars', 'glib-or-gtk-compile-schemas', and 'glib-or-gtk-wrap' phases.
2018-10-05gnu: Add bastet.Tobias Geerinckx-Rice
* gnu/packages/games.scm (bastet): New public variable. * gnu/packages/patches/bastet-change-source-of-unordered_set.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2018-10-05gnu: fdroidserver: Update to 1.0.10.Tobias Geerinckx-Rice
* gnu/packages/android.scm (fdroidserver): Update to 1.0.10.
2018-10-05gnu: audacity: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/audio.scm (audacity)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-10-05gnu: filezilla: Update to 3.37.4.Tobias Geerinckx-Rice
* gnu/packages/ftp.scm (filezilla): Update to 3.37.4.
2018-10-05gnu: libfilezilla: Update to 0.14.0.Tobias Geerinckx-Rice
* gnu/packages/ftp.scm (libfilezilla): Update to 0.14.0.
2018-10-05gnu: samtools-0.1: Adjust to match changes in samtools.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools-0.1)[arguments]: Override make flags.
2018-10-05gnu: deeptools: Update to 3.1.2.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (deeptools): Update to 3.1.2. [source]: Fetch from git. [arguments]: Delete reset-gzip-timestamps phase. [inputs]: Add python-plotly.
2018-10-05gnu: python-pysam: Update to 0.15.1.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (python-pysam): Update to 0.15.1. [source]: Fetch from git. [arguments]: Delete tests requiring internet access; use "invoke". [inputs]: Add curl.
2018-10-05gnu: python-plotly: Add python-pandas to inputs.Ricardo Wurmus
* gnu/packages/graph.scm (python-plotly)[propagated-inputs]: Add python-pandas.
2018-10-05gnu: bcftools: Update to 1.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bcftools): Update to 1.9. [arguments]: Remove obsolete make flags.
2018-10-05gnu: samtools: Update to 1.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (samtools): Update to 1.9. [origin]: Remove bundled htslib sources. [arguments]: Remove obsolete make-flags.
2018-10-05gnu: htslib: Update to 1.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib): Update to 1.9.
2018-10-04gnu: icecat: Add fixes from mozilla-esr60 [security fixes].Mark H Weaver
Includes fixes for CVE-2018-12386 and CVE-2018-12387. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr60 repository.
2018-10-04gnu: linux-libre: Update to 4.18.12.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.18.12. (%linux-libre-hash): Update hash.
2018-10-04gnu: linux-libre@4.14: Update to 4.14.74.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.74. (%linux-libre-4.14-hash): Update hash.
2018-10-04gnu: linux-libre@4.9: Update to 4.9.131.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.131.
2018-10-04gnu: petsc-openmpi: Configure with support for MUMPS solver.Paul Garlick
* gnu/packages/maths.scm (petsc-openmpi)[inputs]: Add metis, mumps-openmpi, scalapack and pt-scotch. [arguments]: Add "--with-PACKAGENAME=1" flags. Move 'mpi-setup' phase ahead of 'configure' phase. Signed-off-by: Leo Famulari <leo@famulari.name>
2018-10-04gnu: hiawatha: Set sane run-time directory defaults.Tobias Geerinckx-Rice
* gnu/packages/web.scm (hiawatha)[arguments]: Set sane default directories. Replace the 'remove-empty-dirs' phase with a 'install-no-empty-directories' one.
2018-10-04gnu: hwloc: Update to 2.0.2.Tobias Geerinckx-Rice
* gnu/packages/mpi.scm (hwloc): Update to 2.0.2.
2018-10-04gnu: Add nsd.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (nsd): New public variable.
2018-10-04gnu: guile-next: Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.David Thompson
* gnu/packages/guile.scm (guile-next): Update to commit 6f3357b0df64c4be17e72079864c09a542f1c779.
2018-10-04gnu: guile-next: Add the correct native search paths.David Thompson
* gnu/packages/guile.scm (guile-next): Add native search paths for version 3.0.
2018-10-04gnu: hiawatha: Support HTTP/2.Tobias Geerinckx-Rice
* gnu/packages/web.sck (hiawatha)[arguments]: USE_SYSTEM_NGHTTP2 to ENABLE_HTTP2. [inputs]: Add nghttp2:lib.
2018-10-04gnu: hiawatha: Update to 10.8.3.Tobias Geerinckx-Rice
* gnu/packages/web.scm (hiawatha): Update to 10.8.3. [source]: Also delete bundled copy of nghttp2. [inputs]: Use mbedtls-for-hiawatha instead of vanilla mbedtls-apache. * gnu/packages/tls.scm (mbedtls-for-hiawatha): New public variable.
2018-10-04gnu: mbedtls-apache: Update to 2.13.0 [security fixes].Tobias Geerinckx-Rice
* gnu/packages/tls.scm (mbedtls-apache): Update to 2.13.0. [native-inputs]: Add python.
2018-10-04gnu: geos: Update to 3.7.0.Arun Isaac
* gnu/packages/geo.scm (geos): Update to 3.7.0.
2018-10-04gnu: hexedit: Update to 1.4.2.Tobias Geerinckx-Rice
* gnu/packages/hexedit.scm (hexedit): Update to 1.4.2. [source]: Use the author's more up-to-date git repository. [native-inputs]: Add autoconf and automake.
2018-10-04gnu: html-xml-utils: Update to 7.7.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (html-xml-utils): Update to 7.7.
2018-10-04gnu: perl-xml-feed: Update to 0.54.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-feed): Update to 0.54.
2018-10-04gnu: guix: Update to 1d0be47.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to 1d0be47.
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