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2017-04-21gnu: proteinortho: Update to 5.16.Ben Woodcroft
* gnu/packages/bioinformatics.scm (proteinortho): Update to 5.16.
2017-04-21gnu: diamond: Update to 0.8.38.Ben Woodcroft
* gnu/packages/bioinformatics.scm (diamond): Update to 0.8.38.
2017-04-21gnu: miniupnpc: Use @dfn mark-up.Tobias Geerinckx-Rice
gnu/packages/upnp.scm (miniupnpc)[description]: Use @dfn.
2017-04-21gnu: miniupnpc: Update to 2.0.20170421.Tobias Geerinckx-Rice
gnu/packages/upnp.scm (miniupnpc): Update to 2.0.20170421.
2017-04-21gnu: fortify-headers: Use @code mark-up.Tobias Geerinckx-Rice
* gnu/packages/suckless.scm (fortify-headers)[description]: Use @code.
2017-04-21gnu: Use HTTPS on 2f30.org.Tobias Geerinckx-Rice
* gnu/packages/suckless.scm (spoon, xbattmon, wificurse, skroll, sbm) (prout, noice, fortify-headers, colors)[source, home-page]: Use HTTPS. (human)[home-page]: Likewise. * gnu/packages/version-control.scm (stagit)[source, home-page]: Likewise.
2017-04-21gnu: version-control: Use HTTPS where possible.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (git)[home-page]: Use HTTPS. (cvs)[source, home-page]: Likewise.
2017-04-21gnu: git-crypt: Double-space Texinfo mark-up.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (git-crypt)[description]: Use two spaces where one would suffice.
2017-04-21gnu: diffstat: Use @command mark-up.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (diffstat)[synopsis, description]: Use @command.
2017-04-21gnu: diffstat: Update to 1.61.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (diffstat): Update to 1.61. [source]: Add http://invisible-mirror.net mirror.
2017-04-21gnu: neon: Use @enumerate mark-up.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (neon)[description]: Use @enumerate.
2017-04-21gnu: neon: Update to 0.30.2.Tobias Geerinckx-Rice
* gnu/packages/version-control.scm (neon): Update to 0.30.2.
2017-04-21gnu: cgit: Update to 1.1.Vasile Dumitrascu
* gnu/packages/version-control.scm (cgit): Update to 1.1. (git@2.9): Rename to... (git@2.10): ... this. Update to 2.10. (cgit)[inputs]: Replace git@2.9 with git@2.10. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-21gnu: tmux: Update to 2.4.Vasile Dumitrascu
* gnu/packages/tmux.scm (tmux): Update to 2.4. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-04-21gnu: cargo: Simplify unpacking.Danny Milosavljevic
Fixes <http://bugs.gnu.org/26166>. * gnu/packages/rust.scm (cargo) [arguments]<:modules>: Add (srfi srfi-1). [arguments]<:phases>: Adapt 'unpack-submodule-sources' phase to more clearly seperate the tasks it does. Add helper procedures 'unpack', 'touch', 'install-rust-library'. [arguments]<:phases>: Rename 'set-cargo-home' to 'set-environment-up' and make it use official cargo directories. [arguments]<:phases>: Remove 'configure' phase.
2017-04-21gnu: icecat: Update to 52.0.2-gnu1; add fixes from ESR 52.1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 52.0.2-gnu1. [source]: Remove all patches except "icecat-avoid-bundled-libraries.patch". Add selected fixes from the upstream mozilla-esr52 repository, up to 52.1. Remove "dom/devicestorage" in the snippet. [inputs]: Remove gstreamer and gst-plugins-base. Add ffmpeg and gtk+3. Move yasm to native-inputs. [native-inputs]: Add autoconf-2.13 and yasm. [arguments]: In configure-flags, remove the following switches which are no longer accepted: --enable-{pango,svg,canvas,mathml,gstreamer=1.0} and "--disable-gnomevfs". Use "--enable-default-toolkit=cairo-gtk3" to switch to Gtk+3. Remove the 'remove-h264parse-from-blacklist' phase. Adapt the 'arrange-to-link-libxul-with-libraries-it-might-dlopen' phase as needed. In the 'configure' phase, set the AUTOCONF environment variable. (mozilla-patch): Update the URL pattern to fetch from the mozilla-esr52 repository. * gnu/packages/patches/icecat-avoid-bundled-libraries.patch: Adapt to mozilla-esr52. * gnu/packages/patches/icecat-binutils.patch: Remove file. * gnu/packages/patches/icecat-bug-1299500-pt10.patch: New file. * gnu/local.mk (dist_patch_DATA): Remove "icecat-binutils.patch". Add "icecat-bug-1299500-pt10.patch".
2017-04-21gnu: Add autoconf@2.13.Mark H Weaver
* gnu/packages/autotools.scm (autoconf-2.13): New variable.
2017-04-21gnu: nss: Disable long b64 tests.Mark H Weaver
Suggested by Marius Bakke <mbakke@fastmail.com> in <https://lists.gnu.org/archive/html/guix-devel/2017-04/msg00440.html>. * gnu/packages/patches/nss-disable-long-b64-tests.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/gnuzilla.scm (nss)[source]: Add patch.
2017-04-21gnu: nss: Update to 3.30.2 [fixes CVE-2017-5461].Mark H Weaver
* gnu/packages/gnuzilla.scm (nss): Update to 3.30.2.
2017-04-21gnu: graphite2: Add fixes for CVE-2017-5436 and other bugs.Mark H Weaver
* gnu/packages/fontutils.scm (graphite2)[replacement]: New field. (graphite2/fixed): New variable. * gnu/packages/patches/graphite2-CVE-2017-5436.patch, gnu/packages/patches/graphite2-check-code-point-limit.patch, gnu/packages/patches/graphite2-fix-32-bit-wrap-arounds.patch, gnu/packages/patches/graphite2-non-linear-classes-even-number.patch: New files. * gnu/local.mk (dist_patch_DATA): Add them.
2017-04-20gnu: hypre: Delete unused patches.Eric Bavier
* gnu/packages/patches/hypre-doc-tables.patch, gnu/packages/patches/hypre-ldflags.patch: Delete. * gnu/local.mk (dist_patch_DATA): Remove them.
2017-04-20gnu: ceph: Disable SSE3 instructions.Marius Bakke
Some early 64-bit AMD processors do not support this instruction set. * gnu/packages/patches/ceph-disable-cpu-optimizations.patch: Disable SSE3.
2017-04-20gnu: nss-certs: Update to 3.30.2.Marius Bakke
* gnu/packages/certs.scm (nss-certs): Update to 3.30.2.
2017-04-20gnu: gst-plugins-base: Remove dead comment.Leo Famulari
This is a followup to 1d8e7273578e95f6b5e4293ac34c4f6fe5d5c579. * gnu/packages/gstreamer.scm (gst-plugins-base): Remove dead comment.
2017-04-20gnu: qemu: Update to 2.9.0 [security fixes].Leo Famulari
Fixes CVE-2017-{5857,5973,5987,6058,6505,7377,7471,7718}. * gnu/packages/qemu.scm (qemu): Update to 2.9.0. [source]: Remove obsolete patches. * gnu/packages/patches/qemu-CVE-2016-10155.patch, gnu/packages/patches/qemu-CVE-2017-5525.patch, gnu/packages/patches/qemu-CVE-2017-5526.patch, gnu/packages/patches/qemu-CVE-2017-5552.patch, gnu/packages/patches/qemu-CVE-2017-5578.patch, gnu/packages/patches/qemu-CVE-2017-5579.patch, gnu/packages/patches/qemu-CVE-2017-5856.patch, gnu/packages/patches/qemu-CVE-2017-5898.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2017-04-20gnu: tuxpaint: Disable parallel build.Marius Bakke
* gnu/packages/games.scm (tuxpaint)[arguments]<#:parallel-build?>: New parameter.
2017-04-20gnu: xorg-server: Hide the for-test variant.Ludovic Courtès
* gnu/packages/xorg.scm (xorg-server-1.19.2): Wrap in 'hidden-package' call.
2017-04-20gnu: Add Meson.Corentin Bocquillon
* gnu/packages/build-tools.scm (meson): New variables. Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2017-04-20gnu: gnurl: Update to 7.54.0 [fixes CVE-2017-7468]ng0
* gnu/packages/gnunet.scm (gnurl): Update to 7.54.0. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-04-20gnu: icu4c: Fix CVE-2017-{7867,7868}.Leo Famulari
* gnu/packages/patches/icu4c-CVE-2017-7867-CVE-2017-7868.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/icu4c.scm (icu4c/fixed)[source]: Use it.
2017-04-20gnu: python-nbxmpp: Update to 0.5.5.Tobias Geerinckx-Rice
* gnu/packages/messaging.scm (python-nbxmpp): Update to 0.5.5. [source]: Use PYPI-URI. [home-page]: Use HTTPS. [description]: Fix up.
2017-04-20gnu: moreutils: Update to 0.60.Efraim Flashner
* gnu/packages/moreutils.scm (moreutils): Update to 0.60.
2017-04-20gnu: ffmpeg: Update to 3.3.Efraim Flashner
* gnu/packages/video.scm (ffmpeg): Update to 3.3. [arguments]: Remove 'enable-x11grab' from #:configure-flags.
2017-04-19gnu: icecat: Label patches that have since been assigned CVEs.Mark H Weaver
Label patches that address the following CVEs: CVE-2017-5429, CVE-2017-5432, CVE-2017-5433, CVE-2017-5434, CVE-2017-5435, CVE-2017-5436, CVE-2017-5438, CVE-2017-5439, CVE-2017-5440, CVE-2017-5441, CVE-2017-5442, CVE-2017-5443, CVE-2017-5444, CVE-2017-5445, CVE-2017-5446, CVE-2017-5447, CVE-2017-5448, CVE-2017-5459, CVE-2017-5460, CVE-2017-5464, CVE-2017-5465, and CVE-2017-5469. * gnu/packages/gnuzilla.scm (icecat)[source][patches]: Add comments indicating CVE assignments.
2017-04-19gnu: Delete unused patches.Leo Famulari
* gnu/packages/patches/icu4c-CVE-2014-6585.patch, gnu/packages/patches/icu4c-CVE-2015-1270.patch, gnu/packages/patches/icu4c-CVE-2015-4760.patch: Delete files. * gnu/local.mk (dist_patch_DATA): Remove them.
2017-04-19gnu: curl: Replace with curl@7.54.0 [fixes CVE-2017-7468]Leo Famulari
* gnu/packages/curl.scm (curl)[replacement]: New field. (curl-7.54.0): New variable.
2017-04-19gnu: guile: Update to 2.2.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-2.2): Update to 2.2.1.
2017-04-19gnu: Add workaround for `date` regression in coreutils@8.26.Marius Bakke
See <https://bugs.gnu.org/23035> and <https://bugs.gnu.org/26238>. * gnu/packages/base.scm (coreutils-8.27): New variable. * gnu/system.scm (%base-packages): Use that instead of COREUTILS.
2017-04-19gnu: emacs-exwm: Let shell wrapper work with arguments.Feng Shu
* gnu/packages/emacs.scm (emacs-exwm): Pass shell wrapper arguments to emacs. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-19gnu: Add balsa.rennes
* gnu/packages/mail.scm (balsa): New variable. Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2017-04-18gnu: linux-libre: Update to 4.10.11.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.10.11. (%linux-libre-hash): Update hash.
2017-04-18gnu: linux-libre@4.9: Update to 4.9.23.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.23.
2017-04-18gnu: linux-libre@4.4: Update to 4.4.62.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.62.
2017-04-18gnu: baobab: Update to 3.24.0.Kei Kebreau
* gnu/packages/gnome.scm (baobab): Update to 3.24.0.
2017-04-18gnu: adwaita-icon-theme: Update to 3.24.0.Kei Kebreau
* gnu/packages/gnome.scm (adwaita-icon-theme): Update to 3.24.0.
2017-04-18gnu: gnome-terminal: Update to 3.24.1.Kei Kebreau
* gnu/packages/gnome.scm (gnome-terminal): Update to 3.24.1.
2017-04-18gnu: guix: Update development snapshot.Ludovic Courtès
* gnu/packages/package-management.scm (guix-devel): Update to d72b420.
2017-04-18gnu: libressl: Do not use 'getentropy'.Ludovic Courtès
* gnu/packages/tls.scm (libressl)[arguments]: New field.
2017-04-18gnu: Add adb.Julien Lepiller
* gnu/packages/android.scm: New file. * gnu/packages/patches/libbase-fix-includes.patch: New file. * gnu/packages/patches/libbase-use-own-logging.patch: New file. * gnu/local.mk (GNU_SYSTEM_MODULES, dist_patch_DATA): Add them. Co-Authored-By: Marius Bakke <mbakke@fastmail.com>
2017-04-18gnu: vte: Update to 0.48.2.Kei Kebreau
* gnu/packages/gnome.scm (vte): Update to 0.48.2.
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