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2019-04-21gnu: r-hdf5r: Update to 1.2.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-hdf5r): Update to 1.2.0.
2019-04-21gnu: guile-parted: Update to 0.0.1.Mathieu Othacehe
* gnu/packages/guile-xyz.scm (guile-parted): Update to 0.0.1.
2019-04-21gnu: guile-newt: Update to 0.0.1.Mathieu Othacehe
* gnu/packages/guile-xyz.scm (guile-newt): Update to 0.0.1.
2019-04-21gnu: mtools: 'mformat' initializes boot sector before writing it.Ludovic Courtès
This is the last bit fixing <https://bugs.gnu.org/35283>. Previously, 'mformat' (used by 'grub-mkrescue') would pass uninitialized bytes to write(2), leading to non-deterministic FAT image contents. This patch fixes that. * gnu/packages/patches/mtools-mformat-uninitialized.patch: New file. * gnu/packages/mtools.scm (mtools)[source]: Use it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-04-21gnu: valgrind: Add 3.15.0.Ludovic Courtès
* gnu/packages/valgrind.scm (valgrind-3.15): New variable.
2019-04-21gnu: grub: 'grub-mkrescue' honors 'GRUB_FAT_SERIAL_NUMBER'.Ludovic Courtès
* gnu/packages/patches/grub-efi-fat-serial-number.patch: New file. * gnu/packages/bootloaders.scm (grub)[source](patches): Add it. * gnu/local.mk (dist_patch_DATA): Add it.
2019-04-20gnu: Add git-lfs.Kei Kebreau
* gnu/packages/version-control.scm (git-lfs): New variable.
2019-04-20gnu: ibus-libpinyin: Add missing runtime input.Ricardo Wurmus
* gnu/packages/ibus.scm (ibus-libpinyin)[inputs]: Add python-pygobject.
2019-04-20gnu: libpinyin: Update to 2.3.0.Ricardo Wurmus
* gnu/packages/ibus.scm (libpinyin): Update to 2.3.0.
2019-04-20gnu: ibus-libpinyin: Update to 1.11.0.Ricardo Wurmus
* gnu/packages/ibus.scm (ibus-libpinyin): Update to 1.11.0.
2019-04-20gnu: ibus: Update to 1.5.20.Ricardo Wurmus
* gnu/packages/ibus.scm (ibus): Update to 1.5.20. [arguments]: Remove make-flags; remove "--disable-python2" from configure-flags; add build phase "patch-python-target-directories". [inputs]: Replace intltool with gnu-gettext.
2019-04-19gnu: rct: Be more idiomatic.Leo Famulari
* gnu/packages/cpp.scm (rct): Move the call to 'git-version' into the package definition. [source]: Explicitly include the source URI rather than using 'home-page'.
2019-04-19gnu: linux-libre: Update to 5.0.8.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 5.0.8. (%linux-libre-hash): Update hash.
2019-04-19gnu: linux-libre@4.19: Update to 4.19.35.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.19-version): Update to 4.19.35. (%linux-libre-4.19-hash): Update hash.
2019-04-19gnu: linux-libre@4.14: Update to 4.14.112.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.112. (%linux-libre-4.14-hash): Update hash.
2019-04-19gnu: linux-libre@4.9: Update to 4.9.169.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.169.
2019-04-19gnu: Add r-styler.Nicolò Balzarotti
* gnu/packages/cran.scm (r-styler): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-04-19gnu: grammalecte: Update to 1.0.1.Nicolas Goaziou
* gnu/packages/dictionaries.scm (grammalecte): Update to 1.0.1. [source]: Update URL.
2019-04-19gnu: linkchecker: Shorten patch file name.Ludovic Courtès
This file name was too long for 'tar', as reported by 'guix lint'. * gnu/packages/patches/linkchecker-mark-more-tests-that-require-the-network.patch: Rename to... * gnu/packages/patches/linkchecker-tests-require-network.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/web.scm (linkchecker)[source]: Likewise.
2019-04-19gnu: ocaml-dose3: Shorten patch file name.Ludovic Courtès
This file name was too long for 'tar', as reported by 'guix lint'. * gnu/packages/patches/ocaml-dose3-Add-unix-as-dependency-to-dose3.common-in-META.in.patch: Rename to... * gnu/packages/patches/ocaml-dose3-add-unix-dependency.patch: ... this. * gnu/local.mk (dist_patch_DATA): Adjust accordingly. * gnu/packages/ocaml.scm (ocaml-dose3)[source]: Adjust accordingly.
2019-04-19gnu: r-seurat: Update to 3.0.0.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (r-seurat): Update to 3.0.0. [propagated-inputs]: Remove r-dosnow, r-dplyr, r-dtw, r-foreach, r-fpc, r-gplots, r-hdf5r, r-hmisc, r-httr, r-lars, r-mixtools, r-reshape2, and r-tidyr; add r-future, r-future-apply, r-ggrepel, r-kernsmooth, r-rlang, r-rsvd, r-scales, and r-sctransform.
2019-04-19gnu: Add r-sctransform.Ricardo Wurmus
* gnu/packages/cran.scm (r-sctransform): New variable.
2019-04-19gnu: r-urltools: Update to 1.7.3.Ricardo Wurmus
* gnu/packages/cran.scm (r-urltools): Update to 1.7.3.
2019-04-19gnu: r-rdpack: Update to 0.11-0.Ricardo Wurmus
* gnu/packages/cran.scm (r-rdpack): Update to 0.11-0.
2019-04-19gnu: r-sdmtools: Update to 1.1-221.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sdmtools): Update to 1.1-221.1.
2019-04-19gnu: r-hardyweinberg: Update to 1.6.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-hardyweinberg): Update to 1.6.2.
2019-04-19gnu: r-clipr: Update to 0.6.0.Ricardo Wurmus
* gnu/packages/cran.scm (r-clipr): Update to 0.6.0.
2019-04-19gnu: r-caret: Update to 6.0-83.Ricardo Wurmus
* gnu/packages/statistics.scm (r-caret): Update to 6.0-83.
2019-04-19gnu: klick: Fix build with latest scons.Ricardo Wurmus
* gnu/packages/music.scm (klick)[arguments]: Patch "SConstruct" file to make it compatible with the current version of scons.
2019-04-19gnu: perl-datetime-timezone: Fix missing timezone data.Christopher Baines
I noticed this when using Sqitch, on systems without /usr/share/zoneinfo, actions like deploy fail. * gnu/packages/perl.scm (perl-datetime-timezone)[arguments]: Add 'patch-tzdata phase to replace /usr/share/zoneinfo with a reference to the tzdata package. [inputs]: Add the tzdata package.
2019-04-19gnu: python2-send2trash: Don't inherit properties from python-send2trash.Marius Bakke
This is a follow-up to commit 20b3fde7763a14f605ac8a0aba1abfa73a6e7dda. Commits and beer do not mix well. * gnu/packages/python-xyz.scm (python2-send2trash): Inherit using STRIP-PYTHON2-VARIANT.
2019-04-19gnu: python-send2trash: Really delay Python2 variant.Marius Bakke
This is a follow-up to commit 4782a06f45d515eebc4d1ee8e958def409a0ef9f, which somehow solved my problem, but did so incorrectly. * gnu/packages/python-xyz.scm (python-send2trash)[properties]: Refer to PYTHON2-SEND2TRASH.
2019-04-19gnu: gpgme: Update to 1.13.0.Marius Bakke
* gnu/packages/gnupg.scm (gpgme): Update to 1.13.0. [source](patches): Remove.
2019-04-19gnu: python-send2trash: Properly delay python2 variant.Marius Bakke
* gnu/packages/python-xyz.scm (python2-send2trash)[properties]: Move from here ... (python-send2trash)[properties]: ... to here.
2019-04-19gnu: python-service-identity: Update to 18.1.0.Marius Bakke
* gnu/packages/python-crypto.scm (python-service-identity): Update to 18.1.0.
2019-04-19gnu: python-jsonschema: Update to 3.0.1.Marius Bakke
* gnu/packages/python-xyz.scm (python-jsonschema): Update to 3.0.1. [arguments]: Adjust check phase for Twisted instead of nosetests. [native-inputs]: Remove PYTHON-NOSE and PYTHON-VCVERSIONER. Add PYTHON-SETUPTOOLS-SCM and PYTHON-TWISTED. [propagated-inputs]: Add PYTHON-ATTRS, PYTHON-PYRSISTENT and PYTHON-SIX. (python2-jsonschema)[native-inputs, propagated-inputs]: Inherit.
2019-04-19gnu: Add python-pyrsistent.Marius Bakke
* gnu/packages/python-xyz.scm (python-pyrsistent, python2-pyrsistent): New public variables.
2019-04-19gnu: python-twisted: Update to 19.2.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-twisted): Update to 19.2.0. [propagated-inputs]: Add PYTHON-PYHAMCREST.
2019-04-19gnu: python-automat: Update to 0.7.0.Marius Bakke
* gnu/packages/python-xyz.scm (python-automat): Update to 0.7.0.
2019-04-19gnu: python-m2r: Update to 0.2.1.Marius Bakke
* gnu/packages/python-xyz.scm (python-m2r): Update to 0.2.1.
2019-04-19gnu: python-idna: Update to 2.8.Marius Bakke
* gnu/packages/python-xyz.scm (python-idna): Update to 2.8.
2019-04-19gnu: python-hyperlink: Update to 19.0.0.Marius Bakke
* gnu/packages/python-web.scm (python-hyperlink): Update to 19.0.0.
2019-04-19gnu: python-zope-interface: Update to 4.6.0.Marius Bakke
* gnu/packages/python-web.scm (python-zope-interface): Update to 4.6.0.
2019-04-19gnu: xmlsec: Update to 1.2.28.Marius Bakke
* gnu/packages/xml.scm (xmlsec): Update to 1.2.28.
2019-04-18gnu: gnuastro: Update to 0.9.Efraim Flashner
* gnu/packages/astronomy.scm (gnuastro): Update to 0.9. [native-inputs]: Add libtool.
2019-04-18gnu: nano: Update to 4.1.Efraim Flashner
* gnu/packages/nano.scm (nano): Update to 4.1.
2019-04-18gnu: xpra: Update to 2.5.1.Rutger Helling
* gnu/packages/xorg.scm (xpra): Update to 2.5.1.
2019-04-17gnu: rclone: Update to 1.47.0.Tobias Geerinckx-Rice
* gnu/packages/sync.scm (rclone): Update to 1.47.0.
2019-04-17gnu: console-setup: Update to 1.191.Tobias Geerinckx-Rice
* gnu/packages/xorg.scm (console-setup): Update to 1.191.
2019-04-17gnu: guix: Update to b8b1e4d.Ludovic Courtès
* gnu/packages/package-management.scm (guix): Update to b8b1e4d.
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