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2017-03-10gnu: wget: Fix CVE-2017-6508.Leo Famulari
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-11gnu: Add r-fnn.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fnn): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-pbapply.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-pbapply): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-vgam.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-vgam): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: vsearch: Update to 2.4.2.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
2017-03-11gnu: Add r-ape.Raoul Jean Pierre Bonnal
* gnu/packages/bioinformatics.scm (r-ape): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-fpc.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fpc): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-trimcluster.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-trimcluster): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-robustbase.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-robustbase): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-deoptimr.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-deoptimr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-prabclus.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-prabclus): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-mclust.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-mclust): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-flexmix.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-flexmix): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-modeltools.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-modeltools): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-diptest.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-diptest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-10gnu: Add obnam.Arun Isaac
* gnu/packages/backup.scm (obnam): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-10gnu: icestorm: Replace reference in icebox_vlog.Theodoros Foradis
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase "fix-usr-local" to replace reference to /usr/local/share.
2017-03-10gnu: dub: Update to 1.2.2.Danny Milosavljevic
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
2017-03-10gnu: hmmer: Build reproducibly.Ben J. Woodcroft
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10gnu: Add sambamba.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
2017-03-10gnu: pidgin: Update to 2.12.0 [fixes CVE-2017-2640].Leo Famulari
* gnu/packages/messaging.scm (pidgin): Update to 2.12.0.
2017-03-09gnu: neomutt: Configure with 'lmdb' and 'kyotocabinet'.ng0
* gnu/packages/mail.scm (neomutt)[configure]: Add '--with-kyotocabinet' and '--with-lmdb'. [inputs]: Add 'lmdb' and 'kyotocabinet'. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: neomutt: Update to 20170306.ng0
* gnu/packages/mail.scm (neomutt): Update to 20170306. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09Revert "gnu: neomutt: Configure with 'lmdb' and 'tokyocabinet'."ng0
'kyotocabinet' is more current than tokyocabinet in development and supported in neomutt aswell. This reverts commit ef91e2b964ec0952698dd1bf7daf76624fed2145. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: hiawatha: Adjust description.ng0
* gnu/packages/web.scm (hiawatha)[description]: Adjust it. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: Add font-tamzen.ng0
* gnu/packages/fonts.scm (font-tamzen): New variable. Signed-off-by: Kei Kebreau <kei@openmailbox.org>
2017-03-09gnu: btrfs-progs/static: Correct description.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs/static)[description]: Use the correct name of the btrfs-progs package and @command{} mark-up.
2017-03-09gnu: btrfs-progs: Update to 4.10.Tobias Geerinckx-Rice
* gnu/packages/linux.scm (btrfs-progs): Update to 4.10.
2017-03-09gnu: ibus-anthy: Update to 1.5.9.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus-anthy): Update to 1.5.9.
2017-03-09gnu: ibus: Update to 1.5.15.Tobias Geerinckx-Rice
* gnu/packages/ibus.scm (ibus): Update to 1.5.15.
2017-03-09gnu: pius: Update to 2.2.4.Tobias Geerinckx-Rice
* gnu/packages/gnupg.scm (pius): Update to 2.2.4.
2017-03-09gnu: youtube-dl: Update to 2017.03.07.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.03.07.
2017-03-09gnu: graphicsmagick: Build with 16 bit quantum depth.Arun Isaac
Octave requires graphicsmagick to be built with 16 bit quantum depth. * gnu/packages/imagemagick.scm (graphicsmagick)[arguments]: Add "--with-quantum-depth=16" and "--enable-quantum-library-names" to #:configure-flags. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: octave: Build with curl and graphicsmagick.Arun Isaac
* gnu/packages/maths.scm (octave)[inputs]: Add curl and graphicsmagick. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-09gnu: xf86-input-libinput: Update to 0.25.0.Marius Bakke
* gnu/packages/xorg.scm (xf86-input-libinput): Update to 0.25.0.
2017-03-09gnu: Add python2-larch.Arun Isaac
* gnu/packages/python.scm (python2-larch): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-tracing.Arun Isaac
* gnu/packages/python.scm (python2-tracing): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-ttystatus.Arun Isaac
* gnu/packages/python.scm (python2-ttystatus): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: Add python2-cliapp.Arun Isaac
* gnu/packages/python.scm (python2-cliapp): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-09gnu: python-numpy-documentation: Use full git commit hash in submodule.Marius Bakke
* gnu/packages/python.scm (python-numpy-documentation, python2-numpy-documentation)[native-inputs]: Update hash of SCIPY-SPHINX-THEME. Fix indentation of a line.
2017-03-09gnu: Remove obsolete numpy comment.Marius Bakke
* gnu/packages/python.scm: Remove comment.
2017-03-09gnu: inetutils: Disable parallel tests.Marius Bakke
* gnu/packages/admin.scm (inetutils)[arguments]: Add #:parallel-tests? #f.
2017-03-09gnu: python-pandas: Really fix build on 32bit.Marius Bakke
* gnu/packages/patches/python-pandas-skip-failing-tests.patch: Fix confusion with same-named test.
2017-03-09gnu: Add rsnapshot.Thomas Danckaert
* gnu/packages/backup.scm (rsnapshot): New variable.
2017-03-09gnu: python-fake-factory: Add back missing patch file.Mark H Weaver
This reverts the removal of "python-fake-factory-fix-build-32bit.patch" by commit ce7911ddae5d30ba73c8c9552b7d4e71268e5db3. * gnu/packages/patches/python-fake-factory-fix-build-32bit.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it.
2017-03-09gnu: inetutils: Set the $localstatedir.Leo Famulari
This is a followup to commit 6f5d28f9d05aaa9743b3aac6bceb2c6323122d2d. * gnu/packages/admin.scm (inetutils)[arguments]: Pass '--localstatedir=/var' to #:configure-flags.
2017-03-09gnu: icecat: Add fixes from upstream Firefox ESR 45.8.0.Mark H Weaver
Includes fixes for CVE-2017-5398, CVE-2017-5400, CVE-2017-5401, CVE-2017-5402, CVE-2017-5404, CVE-2017-5405, CVE-2017-5407, CVE-2017-5408, CVE-2017-5409, and CVE-2017-5410. * gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from the upstream mozilla-esr45 repository.
2017-03-09gnu: icecat: Update to 45.7.0-gnu1.Mark H Weaver
* gnu/packages/gnuzilla.scm (icecat): Update to 45.7.0-gnu1. Remove patches included in 45.7.0.
2017-03-09gnu: r: Remove obsolete configure flags.Ricardo Wurmus
* gnu/packages/statistics.scm (r)[arguments]: Remove obsolete configure flags.
2017-03-09gnu: r: Update to 3.3.3.Ricardo Wurmus
* gnu/packages/statistics.scm (r): Update to 3.3.3.
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