Age | Commit message (Collapse) | Author |
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* gnu/packages/databases.scm (kyotocabinet)[source, home-page]:
Use HTTPS.
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* gnu/packages/java.scm (java-xmlunit)[home-page]: Use HTTPS.
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* gnu/packages/web.scm (libyaml)[source, home-page]: Use HTTPS.
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* gnu/packages/bioinformatics.scm (r-genomation, r-genomationdata, pigx-rnaseq)
(pigx-chipseq, pigx-bsseq, pigx-scrnaseq, pigx)[home-page]: Use HTTPS.
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* gnu/packages/bioinformatics.scm (java-biojava-core)
(java-biojava-phylo, java-biojava-alignment, java-biojava-phylo-4.0)
(java-biojava-alignment-4.0)[home-page]: Use HTTPS.
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gnu/packages/audio.scm (jack-1)[source]: Use a working mirror.
[home-page]: Use HTTPS.
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* gnu/packages/graph.scm (igraph, r-igraph)[home-page]: Use HTTPS.
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* gnu/packages/haskell-xyz.scm (ghc-pandoc-types)[home-page]: Use HTTPS.
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* gnu/packages/haskell-web.scm (ghc-css-text, ghc-yesod-persistent)
[home-page]: Use HTTPS.
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* gnu/packages/bioconductor.scm (r-qvalue)[home-page]: Use HTTPS and
follow permanent redirection.
* gnu/packages/check.scm (python-codecov, python-nosexcover)
[home-page]: Likewise.
* gnu/packages/cran.scm (r-ffbase, r-ggrepel, r-valr)
[home-page]: Likewise.
* gnu/packages/crates-io.scm (rust-block-0.1, rust-dispatch-0.1)
(rust-objc-0.2, rust-objc-exception-0.1)
(rust-objc-foundation-0.1, rust-objc-id-0.1, rust-objc-test-utils-0.0)
(rust-onig-5.0, rust-onig-sys-69.2, rust-vergen-3.1)
[home-page]: Likewise.
* gnu/packages/finance.scm (ledger-agent, keepkey-agent)
[home-page]: Likewise.
* gnu/packages/haskell-check.scm (ghc-tasty-expected-failure)
[home-page]: Likewise.
* gnu/packages/haskell-web.scm (ghc-bsb-http-chunked, ghc-warp)
(ghc-warp-tls)[home-page]: Likewise.
* gnu/packages/haskell-xyz.scm (ghc-configurator, ghc-hasktags)
(ghc-linear, ghc-newtype-generics, ghc-retry, ghc-xdg-basedir)
(ghc-pretty-show)[home-page]: Likewise.
* gnu/packages/java.scm (java-javax-inject)[home-page]: Likewise.
* gnu/packages/libffi.scm (ruby-ffi)[home-page]: Likewise.
* gnu/packages/linux.scm (procenv)[home-page]: Likewise.
* gnu/packages/python-web.scm (python-aiodns, python-flask-htpasswd)
(python-pycares)[home-page]: Likewise.
* gnu/packages/python-xyz.scm (python-progressbar33, python-whatever)
(python-funcy)[home-page]: Likewise.
* gnu/packages/ruby.scm (ruby-rubyzip, ruby-spinach, ruby-gherkin-ruby)
(ruby-code-statistics, ruby-colorize, ruby-wwtd)[home-page]: Likewise.
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* gnu/packages/haskell-web.scm (ghc-hxt-regex-xmlschema)[home-page]:
Use HTTPS and follow permanent redirection.
* gnu/packages/haskell-xyz.scm (ghc-alsa-core, ghc-base-unicode-symbols)
(ghc-colour, ghc-data-accessor, ghc-data-accessor-transformers)
(ghc-gluraw, ghc-glut, ghc-gnuplot, ghc-haddock-test, ghc-opengl)
(ghc-openglraw, ghc-storablevector)[home-page]: Likewise.
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* gnu/packages/web-browsers.scm (bombadillo)[home-page]: Use HTTPS.
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* gnu/packages/lsof.scm (lsof)[home-page]: Use HTTPS.
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Also add a missing copyright line for an obvious nckx phase.
* gnu/packages/lirc.scm (lirc)[home-page]: Use HTTPS.
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* gnu/packages/audio.scm (lv2)[source, home-page]: Use HTTPS.
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* gnu/packages/lisp-xyz.scm (sbcl-opticl, cl-opticl): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-pngload, cl-pngload, ecl-pngload): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-zpb-exif, cl-zpb-exif, ecl-zpb-exif): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-3bz, cl-3bz, ecl-3bz): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-mmap, cl-mmap, ecl-mmap): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-retrospectiff, cl-retrospectiff,
ecl-retrospectiff): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-opticl-core, cl-opticl-core,
ecl-opticl-core): New variables.
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* gnu/packages/lisp-xyz.scm (sbcl-freetype2, cl-freetype2, ecl-freetype2): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-skippy, cl-skippy, ecl-skippy): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-deflate, cl-deflate, ecl-deflate): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-com.gigamonkeys.binary-data,
cl-com.gigamonkeys.binary-data, ecl-com.gigamonkeys.binary-data): New
variables.
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* gnu/packages/lisp-xyz.scm (sbcl-tga, cl-tga, ecl-tga): New variables.
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* gnu/packages/statistics.scm (r-quantreg): Update to 5.61.
[propagated-inputs]: Add r-conquer.
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* gnu/packages/statistics.scm (r-r-rsp): Update to 0.44.0.
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* gnu/packages/statistics.scm (r-tibble): Update to 3.0.3.
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* gnu/packages/statistics.scm (r-rlang): Update to 0.4.7.
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* gnu/packages/cran.scm (r-brms): Update to 2.13.3.
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* gnu/packages/cran.scm (r-gamlss): Update to 5.1-7.
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* gnu/packages/cran.scm (r-gamlss-dist): Update to 5.1-7.
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* gnu/packages/cran.scm (r-pillar): Update to 1.4.6.
[propagated-inputs]: Add r-ellipsis and r-lifecycle.
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* gnu/packages/cran.scm (r-mice): Update to 3.10.0.
[propagated-inputs]: Add r-generics.
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* gnu/packages/cran.scm (r-broom): Update to 0.7.0.
[propagated-inputs]: Remove r-nlme and r-reshape2; add r-ellipsis, r-glue, and
r-rlang.
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* gnu/packages/bioinformatics.scm (r-rhdf5lib): Update to 1.10.1.
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* gnu/packages/bioinformatics.scm (r-qtl2): Update to 0.22-11.
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* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.40.1.
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* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.18.2.
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* gnu/packages/bioconductor.scm (r-activepathways): Update to 1.0.2.
[propagated-inputs]: Remove r-metap.
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* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.2.4.
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* gnu/packages/cran.scm (r-conquer): New variable.
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* gnu/packages/statistics.scm (r-cairo): Update to 1.5-12.2.
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* gnu/packages/statistics.scm (r-gplots): Update to 3.0.4.
[native-inputs]: Add r-knitr.
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* gnu/packages/statistics.scm (r-xml): Update to 3.99-0.4.
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* gnu/packages/statistics.scm (r-tibble): Update to 3.0.2.
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* gnu/packages/statistics.scm (r-svglite): Update to 1.2.3.2.
[native-inputs]: Add r-knitr.
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* gnu/packages/cran.scm (r-rstan): Update to 2.21.1.
[propagated-inputs]: Add r-rcppparallel and r-v8.
[native-inputs]: Add r-knitr.
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