summary refs log tree commit diff
path: root/gnu/packages
AgeCommit message (Collapse)Author
2017-08-03gnu: r-rcpp: Update to 0.12.12.Ricardo Wurmus
* gnu/packages/statistics.scm (r-rcpp): Update to 0.12.12.
2017-08-03gnu: r-plogr: Move to (gnu packages cran).Ricardo Wurmus
* gnu/packages/statistics.scm (r-plogr): Move from here... * gnu/packages/cran.scm (r-plogr): ...to here.
2017-08-03gnu: Add r-glue.Ricardo Wurmus
* gnu/packages/cran.scm (r-glue): New variable.
2017-08-03gnu: Add grub-hybrid.Danny Milosavljevic
* gnu/packages/bootloaders.scm (grub-hybrid): New variable.
2017-08-03gnu: htseq: Use PyPI URI.Ben Woodcroft
This is a follow-up to 92971d68ac942cd4a38092b4ccb20a8192a56aaf. * gnu/packages/bioinformatics.scm (htseq)[source]: Use 'pypi-uri'.
2017-08-03gnu: htseq: Update to 0.9.1.Ben Woodcroft
* gnu/packages/bioinformatics.scm (htseq): Update to 0.9.1. [arguments]: Use python-3 by removing field. [native-inputs]: Add 'python-cython'. [propagated-inputs]: Use python3 numpy package. [inputs]: Use python3 pysam package. Add 'python-matplotlib'. (python2-htseq): New variable. (clipper)[inputs]: Use it.
2017-08-03gnu: vc: Limit to x86_64 and i686.Efraim Flashner
* gnu/packages/maths.scm (vc)[supported-systems]: New field.
2017-08-03gnu: openscenegraph: Add 'Release' configure flag.Manolis Ragkousis
* gnu/packages/graphics.scm (openscenegraph)[arguments]: Add "-DCMAKE_BUILD_TYPE=Release".
2017-08-03gnu: Add LeoCAD.Eric Bavier
* gnu/packages/lego.scm (leocad): New variable.
2017-08-03gnu: youtube-dl: Update to 2017.07.30.1.Tobias Geerinckx-Rice
* gnu/packages/video.scm (youtube-dl): Update to 2017.07.30.1.
2017-08-03gnu: tor: Update to 0.3.0.10.Tobias Geerinckx-Rice
* gnu/packages/tor.scm (tor): Update to 0.3.0.10.
2017-08-02gnu: glibc@2.22: Fix security issues.Efraim Flashner
Fixes CVE-2015-{5180,7547}, CVE-2016-{3075,3706,4429}. * gnu/packages/base.scm (glibc@2.22)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2015-7547.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02gnu: glibc@2.23: Fix CVE-2015-5180, CVE-2016-{3075,3706,4429}.Efraim Flashner
* gnu/packages/base.scm (glibc@2.23)[source]: Add patches. * gnu/packages/patches/glibc-CVE-2016-3075.patch, gnu/packages/patches/glibc-CVE-2016-3706.patch, gnu/packages/patches/glibc-CVE-2016-4429.patch: New files. * gnu/local.mk (dist_patch_DATA): Register them.
2017-08-02gnu: glibc@2.24: Fix CVE-2015-5180.Efraim Flashner
* gnu/packages/base.scm (glibc@2.24)[source]: Add patch. * gnu/packages/patches/glibc-CVE-2015-5180.patch: New file. * gnu/local.mk (dist_patch_DATA): Register it.
2017-08-02gnu: python2-conda: Fix build by building with enum34.Leo Famulari
* gnu/packages/package-management.scm (python2-conda): Use 'python2-variant'. [native-inputs]: Add python2-enum34.
2017-08-02gnu: calibre: Add python2-msgpack as an input.Manolis Ragkousis
* gnu/packages/ebook.scm (calibre)[inputs]: Add python2-msgpack.
2017-08-02gnu: gcc@4.7: Don't built on aarch64.Efraim Flashner
* gnu/packages/gcc.scm (gcc@4.7, gcc@4.8, gcc@4.9)[supported-systems]: New field.
2017-08-02gnu: libpng-apng: Be sure to apply the APNG patch.Leo Famulari
* gnu/packages/image.scm (libpng-apng)[arguments]: Check the return status of the patching procedures.
2017-08-02gnu: libpng-apng: Update to 1.6.28.ng0
Fixes <https://bugs.gnu.org/27556>. * gnu/packages/image.scm (libpng-apng): Update to 1.6.28. Remove inherit of 'libpng'. [version]: Use own version, remove 'package-version libpng'. [source]: Don't inherit the source of libpng. [arguments]: Update hash of libpng-apng source. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-08-02gnu: eyed3: Update to 0.8, build with python3.Thomas Danckaert
* gnu/packages/mp3.scm (eyed3): [source] Update to 0.8. [arguments]: Disable tests; don't use python-2. [propagated-inputs]: Add python-six and python-grako. [native-inputs]: Remove.
2017-08-02gnu: Add python-grakoThomas Danckaert
* gnu/packages/python.scm (python-grako): New variable.
2017-08-02gnu: hdf4: Update to 4.12.13.Thomas Danckaert
* gnu/packages/maths.scm (hdf4): Update to 4.12.13.
2017-08-02gnu: libvirt: Update to 3.6.0.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt): Update to 3.6.0.
2017-08-02gnu: libvirt: Use HTTPS.Tobias Geerinckx-Rice
* gnu/packages/virtualization.scm (libvirt)[source, home-page]: Use HTTPS.
2017-08-02gnu: Add r-rlang.Roel Janssen
* gnu/packages/statistics.scm (r-rlang): New variable.
2017-08-02gnu: r-deseq2: Update to 1.16.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-deseq2): Update to 1.16.1.
2017-08-02gnu: r-annotationforge: Update to 1.18.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotationforge): Update to 1.18.1.
2017-08-02gnu: r-category: Update to 2.42.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-category): Update to 2.42.1.
2017-08-02gnu: r-biocstyle: Update to 2.4.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocstyle): Update to 2.4.1.
2017-08-02gnu: r-dnacopy: Update to 1.50.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-dnacopy): Update to 1.50.1.
2017-08-02gnu: r-iranges: Update to 2.10.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-iranges): Update to 2.10.2.
2017-08-02gnu: r-genomeinfodb: Update to 1.12.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomeinfodb): Update to 1.12.2.
2017-08-02gnu: r-variantannotation: Update to 1.22.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-variantannotation): Update to 1.22.3.
2017-08-02gnu: r-limma: Update to 3.32.5.Roel Janssen
* gnu/packages/bioinformatics.scm (r-limma): Update to 3.32.5.
2017-08-02gnu: r-biobase: Update to 2.36.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biobase): Update to 2.36.2.
2017-08-02gnu: r-annotationdbi: Update to 1.38.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-annotationdbi): Update to 1.38.2.
2017-08-02gnu: r-biomart: Update to 2.32.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biomart): Update to 2.32.1.
2017-08-02gnu: r-biocparallel: Update to 1.10.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biocparallel): Update to 1.10.1.
2017-08-02gnu: r-biostrings: Update to 2.44.2.Roel Janssen
* gnu/packages/bioinformatics.scm (r-biostrings): Update to 2.44.2.
2017-08-02gnu: r-delayedarray: Update to 0.2.7.Roel Janssen
* gnu/packages/bioinformatics.scm (r-delayedarray): Update to 0.2.7.
2017-08-02gnu: r-summarizedexperiment: Update to 1.6.3.Roel Janssen
* gnu/packages/bioinformatics.scm (r-summarizedexperiment): Update to 1.6.3.
2017-08-02gnu: r-genomicalignments: Update to 1.12.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomicalignments): Update to 1.12.1.
2017-08-02gnu: r-rtracklayer: Update to 1.36.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-rtracklayer): Update to 1.36.4.
2017-08-02gnu: r-genomicfeatures: Update to 1.28.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-genomicfeatures): Update to 1.28.4.
2017-08-02gnu: r-copywriter: Update to 2.8.1.Roel Janssen
* gnu/packages/bioinformatics.scm (r-copywriter): Update to 2.8.1.
2017-08-02gnu: r-sva: Update to 3.24.4.Roel Janssen
* gnu/packages/bioinformatics.scm (r-sva): Update to 3.24.4.
2017-08-02gnu: r-rsqlite: Update to 2.0.Roel Janssen
* gnu/packages/statistics.scm (r-rsqlite): Update to 2.0.
2017-08-02gnu: Add r-blob.Roel Janssen
* gnu/packages/statistics.scm (r-blob): New variable.
2017-08-02gnu: Add r-pkgconfig.Roel Janssen
* gnu/packages/statistics.scm (r-pkgconfig): New variable.
2017-08-01gnu: re2: Update to 2017-08-01.Marius Bakke
* gnu/packages/regex.scm (re2): Update to 2017-08-01.
generated by cgit-pink 1.4.1 (git 2.36.1) at 2024-12-23 11:15:10 +0000