Age | Commit message (Collapse) | Author |
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Bug 20765 is solved since we build all Python packages using
option "--single-version-externally-managed".
* gnu/packages/bioinformatics.scm (pbtranscript-tofu): Remove
configure-flags. (pepr): remove phase "disable-egg-generation".
* gnu/packages/pdf.scm (reportlab): Remove configure-flags.
* gnu/packages/python.scm (python-sphinx-rtd-theme, python2-elib.intl,
python-pkgconfig, python-pytest-pep8, python-pytest-flakes): Remove
configure-flags. (python-pillow) remove phase
"disable-egg-generation". (python-libarchive-c) Remove patching
setup.cfg.
* gnu/packages/statistics.scm (python-patsy): remove phase
"prevent-generation-of-egg-archive".
* gnu/packages/tls.scm (python-acme): remove phase
"disable-egg-compression".
* gnu/packages/tor.scm (onionshare): Remove configure-flags.
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This is installed together with Python 3 anyway and for our build
of Python 2.
* gnu/packages/python.scm (python2-fixtures): [inputs] remove "python-pip".
* gnu/packages/pdf.scm (python2-reportlab): [native-inputs] remove
"python2-pip". (python-reportlab)[properties]: remove "python2-variant".
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This patch contains the changes in python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited packge was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (where applicable).
* gnu/packages/python.scm.scm: Remove inheriting Python 2 packages inheriting
from a Python 3 package if adding python-setuptools respective
python2-setuptools to [inputs], [native-inputs] and [propagated-inputs] have
been the sole reason for inheriting. Remove now needless [properties]
"python2-variant" where applicable.
(python2-lockfile, python2-keyring, python2-dateutil-2,
python2-parsedatetime, python2-pandas, python2-pyicu, python2-pytest-cov,
python2-pytest-runner, python2-pytest-xdist, python2-cov-core,
python2-itsdangerous, python2-numexpr, python2-q, python2-sqlalchemy-utils,
python2-alembic, python2-beautifulsoup4, python2-msgpack, python2-ipaddress,
python2-atomicwrites, python2-apipkg, python2-execnet, python2-pytest-cache,
python2-wtforms, python2-mako, python2-waitress, python2-wsgiproxy2,
python2-pyquery, python2-webtest, python2-translitcodec, python2-editor,
python2-sphinxcontrib-programoutput, python2-psycopg2, python2-vobject,
python2-flask, python2-cookies, python2-responses, python2-future,
python2-ply, python2-wcwidth, python2-prompt-toolkit, python2-jedi,
python2-requests-oauthlib, python2-pyserial, python2-nltk, python2-pymongo,
python2-sh, python2-schematics, python2-publicsuffix, python2-publicsuffix2,
python2-url, python2-freezegun, python2-cachecontrol, python2-lit,
python2-pytest-pep8, python2-pytest-flakes, python2-glances,
python2-betamax, python2-file, python2-flask-babel, python2-furl,
python2-imagesize python2-orderedmultidict, python2-pycodestyle,
python2-vcversioner, python2-graphql-core, python2-graphql-relay,
python2-validictory): Remove neesless input "python2-setuptools", don't
inherit, don't call strip-python2-variant.
(python-lockfile, python-keyring, python-dateutil-2, python-parsedatetime,
python-pandas, python-pyicu, python-pytest-cov, python-pytest-runner,
python-pytest-xdist, python-cov-core, python-itsdangerous, python-numexpr,
python-q, python-sqlalchemy-utils, python-alembic, python-beautifulsoup4,
python-msgpack, python-ipaddress, python-atomicwrites, python-apipkg,
python-execnet, python-pytest-cache, python-wtforms, python-mako,
python-waitress, python-wsgiproxy2, python-pyquery, python-webtest,
python-translitcodec, python-editor, python-sphinxcontrib-programoutput,
python-psycopg2, python-vobject, python-flask, python-cookies,
python-responses, python-future, python-ply, python-wcwidth,
python-prompt-toolkit, python-jedi, python-requests-oauthlib,
python-pyserial, python-nltk, python-pymongo, python-sh, python-schematics,
python-nltk, python-publicsuffix2, python-cachecontrol, python-lit,
python-pytest-pep8, python-pytest-flakes, python-glances, python-betamax,
python-file, python-flask-babel, python-furl, python-imagesize,
python-orderedmultidict, python-pycodestyle, python-vcversioner,
python-graphql-core, python-graphql-relay, python-validictory): Remove
"python2-variant" property.
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This patch contains the changes for all modules beside python.scm where
setuptools are used in an inherited package and removing this input also
removes the need for inheriting the package. This is the case if adding
setuptools in the inherited package was the only change.
Change this to not inherit and remove the new needless call to
"strip-python2-variant (if applicable).
* gnu/packages/bioinformatics.scm (python-biopython, python2-biopython,
python-twobitreader, python2-twobitreader,
python-plastid, python2-plastid,
python2-pybigwig,
python2-screed,
sra-tools): No longer "inherit" Python 2 packages
inheriting from a Python 3 package if the sole reason for inheriting was
adding python-setuptools respective python2-setuptools to [inputs],
[native-inputs] or [propagated-inputs]. Remove now needless [properties]
"python2-variant" where applicable.
* gnu/packages/django.scm (python-pytest-django, python2-pytest-django,
python-django-filter, python2-django-filter): Likewise.
* gnu/packages/gnupg.scm (python2-pygpgme): Likewise.
* gnu/packages/mail.scm (python-mailmanclient, python2-mailmanclient):
Likewise.
* gnu/packages/mpd.scm (python-msp, python2-mpd2): Likewise.
* gnu/packages/music.scm (python-pylast, python2-pylast): Likewise.
* gnu/packages/openstack.scm (python-requests-mock, python2-requests-mock,
python2-git-review): Likewise.
* gnu/packages/password-utils.scm (python2-bcrypt): Likewise.
* gnu/packages/protobuf.scm (python-protobuf, python2-protobuf): Likewise.
* gnu/packages/statistics.scm (python-patsy, python2-patsy): Likewise.
* gnu/packages/web.scm (python2-feedparser): Likewise.
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This patch contains the changes where setuptools are used in an inherited
package and removing this input keeps the need for inheriting the package.
* gnu/packages/bioinformatics.scm (python2-biom-format): Remove
python-setuptools respective python2-setuptools from [inputs],
[native-inputs] and [propagated-inputs] in Python 2 packages inheriting from
a Python 3 package.
* gnu/packages/python.scm (python2-pytest-mock,
python2-oauthlib,
python2-seaborn,
python2-tornado,
python2-terminado,
python2-rauth,
python2-anyjson,
python2-amqp,
python2-kombu,
python2-billiard,
python2-celery,
python2-jellyfish,
python2-binaryornot,
python2-natsort,
python2-graphene): Likewise.
* gnu/packages/statistics.scm (python2-statsmodels): Likewise.
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This patch contains the changes where removing setuptools from the inputs
affected some code-lines beside.
* gnu/packages/admin.scm (ansible): Remove all [inputs], [native-inputs] and
[propagated-inputs] where python-setuptools or python2-setuptools are the
sole entries. Remove python-setuptools and python2-setuptools listed on a
line by its own from [inputs], [native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (duplicity): Likewise.
* gnu/packages/bioinformatics.scm (bamm, python2-pybedtools,
python2-bx-python, python2-dendropy, python-pysam, python2-pysam, clipper,
crossmap, cutadapt, deeptools, grit, idr, python2-warpedlmm,
pbtranscript-tofu, seqmagick): Likewise.
* gnu/packages/docbook.scm (dblatex): Likewise.
* gnu/packages/freedesktop.scm (python-pyxdg, python2-pyxdg): Likewise.
* gnu/packages/lirc.scm (python2-lirc): Likewise.
* gnu/packages/mp3.scm (eyed3): Likewise.
* gnu/packages/nutrition.scm (gourmet): Likewise.
* gnu/packages/openstack.scm (python-hacking, python2-hacking,
python-os-testr, python2-os-testr,
python-stevedore, python2-stevedore,
python-tempest-lib, python2-tempest-lib,
python-oslo.log, python2-oslo.log,
python-keystoneclient, python2-keystoneclient): Likewise.
* gnu/packages/password-utils.scm (assword): Likewise.
* gnu/packages/python.scm (python-passlib, python2-passlib,
python-babel, python2-babel,
python-parse-type,
python-pytest, python2-pytest,
python-scripttest, python2-scripttest,
python-testtools, python2-testtools,
python-testscenarios, python2-testscenarios,
python-subunit, python2-subunit,
python-pbr-0.11,
python-pbr, python2-pbr,
python-testrepository, python2-testrepository,
behave,
python-wheel, python2-wheel,
python-requests, python2-requests,
python-jsonschema, python2-jsonschema,
python-pyjwt, python2-pyjwt,
python-virtualenv, python2-virtualenv,
python-jinja2, python2-jinja2,
python-joblib, python2-joblib,
python-sphinx, python2-sphinx,
python-feedgenerator, python2-feedgenerator,
python-scikit-image, python2-scikit-image,
python-redis, python2-redis,
python2-fastlmm,
python-numpydoc, python2-numpydoc,
python-matplotlib, python2-matplotlib,
python2-pysnptools,
python-rpy2, python2-rpy2,
python-pillow, python2-pillow,
python-pycparser, python2-pycparser,
python-cffi, python2-cffi,
python-cairocffi, python2-cairocffi,
python-drmaa, python2-drmaa,
python-pathpy, python2-pathpy,
python-simplegeneric, python2-simplegeneric,
python-ipython, python2-ipython,
python-apsw, python2-apsw,
python-lxml, python2-lxml,
python-networkx, python2-networkx,
python-pyzmq, python2-pyzmq,
python-mccabe, python2-mccabe,
python-mccabe-0.2.1,
python-flake8, python2-flake8,
python-flake8-2.2.4,
python-mistune, python2-mistune,
python-ptyprocess, python2-ptyprocess,
python-llfuse, python2-llfuse,
python-webob, python2-webob,
python-xlrd, python2-xlrd,
python-tables, python2-tables,
python-pip, python2-pip,
python-libarchive-c, python2-libarchive-c,
python-docopt, python2-docopt,
python-pyrfc3339, python2-pyrfc3339,
python-configobj, python2-configobj,
python-clint, python2-clint,
python-rply, python2-rply,
python2-rpython,
python-widgetsnbextension, python2-widgetsnbextension
jupyter,
python-jupyter-console, python2-jupyter-console,
python-hy, python2-hy,
python-urllib3, python2-urllib3,
python-rsa, python2-rsa,
python-tox, python2-tox,
python2-hypothesis,
python-paste, python2-paste,
python-pastescript, python2-pastescript,
python2-unicodecsv,
python-pkgconfig, python2-pkgconfig,
python2-rope,
python-sqlparse, python2-sqlparse,
python-gevent, python2-gevent,
python-tabulate, python2-tabulate,
python-arrow, python2-arrow,
python-cleo, python2-cleo,
python-fake-factory, python2-fake-factory,
ptpython): Likewise.
* gnu/packages/rdf.scm (python-rdflib, python2-rdflib): Likewise.
* gnu/packages/terminals.scm (asciinema): Likewise.
* gnu/packages/version-control.scm (git-annex-remote-hubic): Likewise.
* gnu/packages/xdisorg.scm (arandr): Likewise.
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This patch contains the changes in all modules beside python.scm where
removing setuptools from the inputs could be achieved by removing complete
lines.
* gnu/packages/admin.scm (graphios, thefuck): Remove all [inputs],
[native-inputs] and [propagated-inputs] where python-setuptools or
python2-setuptools are the sole entries. Remove python-setuptools and
python2-setuptools listed on a line by its own from [inputs],
[native-inputs] and [propagated-inputs].
* gnu/packages/backup.scm (rdiff-backup): Likewise.
* gnu/packages/bioinformatics.scm (htseq, macs, python2-pbcore, rseqc,
multiqc): Likewise.
* gnu/packages/django.scm (python-django, python2-django,
python-django-simple-math-captcha, python2-django-simple-math-captcha):
Likewise.
* gnu/packages/docker.scm (python-docker-py, docker-compose): Likewise.
* gnu/packages/game-development.scm (python-pygame): Likewise.
* gnu/packages/key-mon.scm (key-mon): Likewise.
* gnu/packages/mail.scm (khard): Likewise.
* gnu/packages/music.scm (beets, python2-pyechonest): Likewise.
* gnu/packages/openstack.scm (python-bandit, python2-bandit,
python-debtcollector, python2-debtcollector,
python-mox3, python2-mox3,
python-os-client-config, python2-os-client-config,
python-oslo.config, python2-oslo.config,
python-oslo.context, python2-oslo.context,
python-oslo.i18n, python2-oslo.i18n,
python-oslo.serialization, python2-oslo.serialization,
python-oslosphinx, python2-oslosphinx,
python-oslotest, python2-oslotest,
python-oslo.utils, python2-oslo.utils,
python-swiftclient, python2-swiftclient): Likewise.
* gnu/packages/pdf.scm (pdfposter): Likewise.
* gnu/packages/tls.scm (python-acme, python2-acme): Likewise.
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This patch contains the changes in python.scm where removing setuptools from
the inputs could be achieved by removing complete lines.
* gnu/packages/python.scm (python-psutil, python2-psutil,
python-py-bcrypt, python2-py-bcrypt,
python-paramiko, python2-paramiko,
python-httplib2, python2-httplib2,
python-ecdsa, python2-ecdsa,
python-ccm, python2-ccm,
python2-backport-ssl-match-hostname,
python-pycrypto, python2-pycrypto,
python-six, python2-six,
python-dateutil, python2-dateutil,
python2-mechanize,
python-extras, python2-extras,
python-mimeparse, python2-mimeparse,
python-nose, python2-nose,
python-nose2, python2-nose2,
python-unittest2, python2-unittest2,
python-py, python2-py,
python-testresources, python2-testresources,
python-fixtures-0.3.16,
python-fixtures, python2-fixtures,
python-coverage, python2-coverage,
python-discover, python2-discover,
python-exif-read, python2-exif-read,
python-pyld, python2-pyld,
python-certifi, python2-certifi,
python-click, python2-click,
python-vcversioner, python2-vcversioner,
python-unidecode, python2-unidecode,
python-pyyaml, python2-pyyaml,
python-markupsafe, python2-markupsafe,
python-pystache, python2-pystache,
python-docutils, python2-docutils,
python-pygments, python2-pygments,
python-sphinx-rtd-theme, python2-sphinx-rtd-theme,
python-blinker, python2-blinker,
python-rq, python2-rq,
python-numpy, python2-numpy,
python-distutils-extra, python2-distutils-extra,
python2-elib.intl,
python-pillow, python2-pillow,
python-xcffib, python2-xcffib,
python-decorator, python2-decorator,
python-gridmap, python2-gridmap,
python-pickleshare, python2-pickleshare,
python-isodate, python2-isodate,
python-html5lib, python2-html5lib,
python2-cssutils,
python-cssselect, python2-cssselect,
python-netifaces, python2-netifaces,
python-sympy, python2-sympy,
python-testlib, python2-testlib,
python2-xlib,
python-singledispatch, python2-singledispatch,
python-backports-abc, python2-backports-abc,
python-pep8, python2-pep8,
python-pyflakes, python2-pyflakes,
python-fonttools, python2-fonttools,
python-ly,
python-appdirs, python2-appdirs,
python-netaddr, python2-netaddr,
python-wrapt, python2-wrapt,
python-iso8601, python2-iso8601,
python-monotonic, python2-monotonic,
python-prettytable, python2-prettytable,
python-pyasn1-modules, python2-pyasn1-modules,
python-idna, python2-idna,
python-pretend, python2-pretend,
python-cryptography-vectors, python2-cryptography-vectors,
python-cryptography, python2-cryptography,
python-pyopenssl, python2-pyopenssl,
python-debian, python2-debian,
python-chardet, python2-chardet,
python-zope-event, python2-zope-event,
python-zope-i18nmessageid, python2-zope-i18nmessageid,
python-websocket-client, python2-websocket-client,
python-args, python2-args,
python-astor, python2-astor,
python2-functools32,
python2-futures,
python2-promise,
python-colorama, python2-colorama,
python-pluggy, python2-pluggy,
python-jmespath, python2-jmespath,
python-botocore, python2-botocore,
awscli,
python-pytest-subtesthack, python2-pytest-subtesthack,
python-pastedeploy, python2-pastedeploy,
python-magic, python2-magic,
python2-s3cmd,
python2-bz2file,
python-cysignals, python2-cysignals,
python-py3status,
python-tblib, python2-tblib,
python-greenlet, python2-greenlet,
python-twisted, python2-twisted,
python-kazoo, python2-kazoo,
python-pykafka, python2-pykafka,
python2-jsonrpclib,
python-chai, python2-chai,
python-inflection, python2-inflection,
python-pylev, python2-pylev,
python-lazy-object-proxy, python2-lazy-object-proxy,
python-dnspython, python2-dnspython,
python-email-validator, python2-email-validator,
python-ukpostcodeparser, python2-ukpostcodeparser,
python-pyaml, python2-pyaml,
python-flexmock, python2-flexmock,
python-orator, python2-orator,
python-bleach, python2-bleach,
python-ipywidgets, python2-ipywidgets,
python-nbconvert, python2-nbconvert,
python-nbformat, python2-nbformat,
python-axolotl-curve25519, python-axolotl2-curve25519,
python-axolotl, python2-axolotl,
python-nautilus, python-s3transfer): Remove python-setuptools and
python2-setuptools from [inputs], [native-inputs] or [propagated-inputs].
Remove [inputs], [native-inputs] and [propagated-inputs] where
python-setuptools or python2-setuptools were the sole entry.
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* gnu/packages/patches/python-2.7-site-prefixes.patch: New file.
* gnu/packages/python.scm (python-2)[source]: Use it.
* gnu/local.mk (dist_patch_DATA): Add patch.
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* gnu/packages/python.scm (python-2.7): Add "--with-ensurepip=install" to
configure-flags.
* doc/guix.texi (Python Modules): Document it.
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* gnu/packages/gnunet.scm (libmicrohttpd): Update to 0.9.52.
[home-page]: Use https.
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* gnu/packages/maths.scm (octave): Update to 4.2.0.
[native-inputs]: Add lzip.
[home-page]: Use https.
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* gnu/packages/parallel.scm (parallel): Update to 20161022.
[home-page]: Use https.
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* gnu/packages/cdrom.scm (libcdio): Update to 0.94.
[home-page]: Use https.
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* gnu/packages/vpn.scm (gvpe): Update to 3.0.
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* gnu/packages/cryptsetup.scm (cryptsetup): Update to 1.7.3.
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* gnu/packages/python.scm (python-vcversioner): Update to 2.16.0.0.
[inputs]: Remove python-setuptools.
[properties]: New field.
(python2-vcversioner): Use 'strip-python2-variant'.
[native-inputs]: Add python2-setuptools.
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* gnu/packages/shells.scm (fish): Update to 2.4.0.
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* gnu/packages/connman.scm (connman): Use localstatedir outside of store.
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* gnu/packages/python.scm (python-jsonschema)[arguments]: Replace 'check
phase with python nosetests.
[native-inputs]: Add python-nose.
[home-page]: Use https.
(python2-jsonschema)[native-inputs]: Add python2-mock.
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* gnu/packages/freedesktop.scm (accountsservice): Update to 0.6.43.
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* gnu/packages/package-management.scm (guix-devel): Update to commit
7ca37da855fd921fa3925bb62f8015f770b7e784.
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* gnu/packages/package-management.scm (guix-0.11.0)[arguments]: Update
pattern in 'disable-container-tests' to match 'test-equal'.
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* gnu/packages/web.scm (libpsl): Update to 0.15.0.
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* gnu/packages/freedesktop.scm (libinput)[inputs]: Add glib.
[native-inputs]: Add cairo, gtk+-3.
(libinput-minimal)[native-inputs]: Only pkg-config.
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* gnu/packages/freedesktop.scm: Reorder modules alphabetically.
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* gnu/packages/freedesktop.scm (libinput): Update to 1.5.1.
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* gnu/packages/freedesktop.scm (wayland-protocols): Update to 1.7.
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* gnu/packages/video.scm (mpv)[inputs]: Change 'lua' to 'lua-5.2'.
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* gnu/packages/patches/readline-6.2-CVE-2014-2524.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/readline.scm (readline-6.2): Use it.
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* gnu/packages/crypto.scm (signify): Update to 20.
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* gnu/packages/mail.scm (mailutils): Update to 3.0.
[arguments]: Adjust 'pre-build' phase.
* gnu/packages/patches/m4-gets-undeclared.patch: Remove.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
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* gnu/packages/guile.scm (guile-ncurses): Update to 2.1.
[home-page]: Use https.
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* gnu/packages/linux.scm (btrfs-progs): Update to 4.8.3.
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* gnu/packages/web.scm (tidy)[arguments]: Use the ‘modify-phases’ syntax.
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* gnu/packages/protobuf.scm (protobuf)[home-page]: Update it.
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* gnu/packages/mtools.scm (exfat-utils): Update to 1.2.4.
[source, home-page]: Move away from dead Google Code project.
[arguments, native-inputs]: Remove.
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* gnu/packages/lisp.scm (clisp)[inputs]: Use readline-6.2.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/syndication.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/ncurses.scm (stfl): New variable.
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* gnu/packages/perl.scm (perl-modern-perl): New variable.
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* gnu/packages/patches/libtiff-CVE-2016-9273.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/image.scm (libtiff/fixed): Use it.
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* gnu/packages/python.scm (python-flask-restplus): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python.scm (python-rednose): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/python.scm (python-termstyle): New variable.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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This is a followup to 166ba5b10207f44360e218d9e3f00772d09bc7cd.
* gnu/packages/package-management.scm (guix-devel): Update to commit
166ba5b10207f44360e218d9e3f00772d09bc7cd.
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* gnu/packages/lua.scm (lua5.1-sec-0.5): New variable.
* gnu/packages/messaging.scm (prosody):
[inputs]: Change lua5.1-sec to lua5.1-sec-0.5.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/ruby.scm (ruby-lumberjack): Update to 1.0.10.
[native-inputs]: Add 'ruby-timecop'.
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* gnu/packages/ruby.scm (ruby-arel): Update to 7.1.4.
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