Age | Commit message (Collapse) | Author |
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* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
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* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
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* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix
the spelling of ‘millennia’.
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* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7.
[inputs]: Add coreutils, sed, and grep.
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* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to
gunzip executable.
[inputs]: Add gzip.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3.
[inputs]: Add coreutils and perl.
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* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
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* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko):
Update to 2.1.5.
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* gnu/packages/python-crypto.scm (python-pynacl): Update to 1.2.0.
[native-inputs]: Add python-hypothesis.
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* gnu/packages/bioinformatics.scm (pigx): Update to 0.0.2.
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* gnu/packages/bioinformatics.scm (r-rcas)[inputs]: Replace
ghc-pandoc-citeproc with ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/bash.scm (bash-completion): Update to 2.8.
* gnu/packages/patches/bash-completion-directories.patch: Update context.
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* gnu/packages/linux.scm (hdparm): Update to 9.55.
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* gnu/packages/onc-rpc.scm (libtirpc): Update to 1.0.3.
[source]: Remove patch.
* gnu/packages/patches/libtirpc-missing-headers.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
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* gnu/packages/onc-rpc.scm (libtirpc)[arguments]: End phase with #t.
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* gnu/packages/freedesktop.scm (perl-file-basedir): Update to 0.08.
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* gnu/packages/enlightenment.scm (enlightenment): Update to 0.22.2.
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* gnu/packages/openstack.scm (python-oslo.utils): Update to 3.36.0.
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* gnu/packages/openstack.scm (python-oslo.i18n): Update to 3.20.0.
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* gnu/packages/statistics.scm (r-withr): Update to 2.1.2.
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* gnu/packages/terminals.scm (tilda): Update to 1.4.1.
[arguments]: Rename 'autogen phase to 'bootstrap. Clean up 'bootstrap
phase.
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* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.8.
[inputs]: Add python-magic, python-xlrd, and trim-galore.
[arguments]: Disable tests.
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* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/bioinformatics.scm (pigx-bsseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/bioinformatics.scm (pigx-chipseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/bioinformatics.scm (pigx-rnaseq)[inputs]: Replace ghc-pandoc
with ghc-pandoc-1, and ghc-pandoc-citeproc with
ghc-pandoc-citeproc-with-pandoc-1.
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* gnu/packages/haskell.scm (ghc-pandoc-citeproc-with-pandoc-1): New variable.
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* gnu/packages/cran.scm (r-abbyyr): New variable.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/video.scm (youtube-dl): Update to 2018.03.14.
Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
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* gnu/packages/gnome.scm (shotwell): Update to 0.28.0.
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* gnu/packages/ruby.scm (ruby-ruby-engine): New variable.
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* gnu/packages/ruby.scm (ruby-rake): New variable.
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* gnu/packages/ruby.scm (ruby-erubis): New variable.
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* gnu/packages/ruby.scm (ruby-sporkmonger-rack-mount): New variable.
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* gnu/packages/ruby.scm (ruby-creole): New variable.
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* gnu/packages/ruby.scm (ruby-contest): New variable.
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* gnu/packages/ruby.scm (ruby-rack-protection): New variable.
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* gnu/packages/ruby.scm (ruby-rack-test): New variable.
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* gnu/packages/ruby.scm (ruby-asciidoctor): New variable.
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* gnu/packages/maths.scm (ruby-asciimath): New variable.
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Includes fixes for CVE-2018-5146 and CVE-2018-5147.
* gnu/packages/gnuzilla.scm (icecat)[source]: Add selected fixes from
the upstream mozilla-esr52 repository.
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* gnu/packages/terraform.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.
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* gnu/packages/golang.scm (go-github-com-hashicorp-hcl): New variable.
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* gnu/packages/golang.scm (go-github-com-tj-docopt): New variable.
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* gnu/packages/guile.scm (guile-git): Update to 2bb9fbb.
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Fixes <https://bugs.gnu.org/30613>.
Regression introduced in 550f4509acf2c0f67882260414b0bb2843e07465.
Reported by George myglc2 Clemmer <myglc2@gmail.com>.
* gnu/packages/avahi.scm (nss-mdns)[arguments]: Remove
#:configure-flags. Add #:phases.
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* gnu/packages/datamash.scm (datamash): Update to 1.3.
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* gnu/packages/fvwm.scm (fvwm)[arguments]: Add new phase to create '.desktop' file.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/patches/javas-simple-xml-fix-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/java.scm (java-simple-xml)[source](patches): Add it.
Signed-off-by: Ludovic Courtès <ludo@gnu.org>
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* gnu/packages/vulkan.scm (shaderc)[version]: Remove extra '-'.
[arguments]: Remove extra 'mkdir-p' calls and refer to inputs directly.
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