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2019-09-14gnu: r-sjstats: Update to 0.17.6.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjstats): Update to 0.17.6. [propagated-inputs]: Add r-parameters.
2019-09-14gnu: r-emmeans: Update to 1.4.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-emmeans): Update to 1.4.1.
2019-09-14gnu: r-sjlabelled: Update to 1.1.1.Ricardo Wurmus
* gnu/packages/cran.scm (r-sjlabelled): Update to 1.1.1.
2019-09-14gnu: r-circlize: Update to 0.4.8.Ricardo Wurmus
* gnu/packages/cran.scm (r-circlize): Update to 0.4.8.
2019-09-14gnu: r-httpuv: Update to 1.5.2.Ricardo Wurmus
* gnu/packages/cran.scm (r-httpuv): Update to 1.5.2.
2019-09-14gnu: Add r-insol.Ricardo Wurmus
* gnu/packages/cran.scm (r-insol): New variable.
2019-09-14gnu: Add r-rgdal.Ricardo Wurmus
* gnu/packages/cran.scm (r-rgdal): New variable.
2019-09-14gnu: Add r-parameters.Ricardo Wurmus
* gnu/packages/cran.scm (r-parameters): New variable.
2019-09-13gnu: gnujump: Add desktop file.Efraim Flashner
This fixes bug#37069. * gnu/packages/games.scm (gnujump)[arguments]: Add custom 'create-desktop-entry phase to install a desktop file.
2019-09-13gnu: tipp10: Fix path in desktop entry.Efraim Flashner
* gnu/packages/patches/tipp10-fix-compiling.patch: Remove changes to hardcode executable path.
2019-09-13gnu: gmsh: Update home page.Paul Garlick
This addresses a 'guix lint' warning. * gnu/packages/maths.scm (gmsh)[home-page]: Update to avoid URL redirection.
2019-09-13gnu: mcron: Update to 1.1.2.Efraim Flashner
* gnu/packages/guile-xyz.scm (mcron): Update to 1.1.2. [arguments]: Remove custom 'set-timezone phase. [native-inputs]: Add autoconf, automake, help2man, texinfo. [inputs]: Remove ed, which.
2019-09-13gnu: shellutils.scm: Sort module inputs.Efraim Flashner
* gnu/packages/shellutils.scm: Sort module inputs alphabetically.
2019-09-13gnu: Add zsh-autosuggestions.Collin J. Doering
* gnu/packages/shellutils.scm (zsh-autosuggestions): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13gnu: Add ruby-rspec-wait.Collin J. Doering
* gnu/packages/ruby.scm (ruby-rspec-wait): New variable. Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2019-09-13gnu: Add sh-z shell toolCollin J. Doering
* gnu/packages/shellutils.scm (sh-z): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-13gnu: Thunar: Update to 1.8.9.L p R n d n
* gnu/packages/xfce.scm (thunar): Update to 1.8.9. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-13gnu: openblas: Set 'NUM_THREADS'.Ludovic Courtès
Until now, OpenBLAS would use at most the N threads, where N is the number of cores that happened to be available on the build machine (typically N=8). * gnu/packages/maths.scm (openblas/fixed-num-threads): New variable. (openblas)[replacement]: New field. (openblas-ilp64): Use 'package/inherit'.
2019-09-13gnu: python-matplotlib-documentation: Add missing input.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-matplotlib-documentation)[native-inputs]: Add python-sphinx-copybutton. (python2-matplotlib-documentation)[native-inputs]: Remove python-sphinx-copybutton.
2019-09-13gnu: Add python-sphinx-copybutton.Ricardo Wurmus
* gnu/packages/sphinx.scm (python-sphinx-copybutton): New variable.
2019-09-13gnu: python-matplotlib: Update to 3.1.1.Ricardo Wurmus
* gnu/packages/python-xyz.scm (python-matplotlib): Update to 3.1.1. [native-inputs]: Remove python-nose; add python-pytest and unzip; add jquery-ui. [arguments]: Add build phases "fix-and-disable-failing-tests" and "install-jquery-ui", and move the "check" phase after the "install" phase; use the default backend in setup.cfg. (python2-matplotlib): Keep at version 2.2.3. (python-matplotlib-documentation)[arguments]: Remove "check" phase.
2019-09-13gnu: Add r-assertr.Wiktor Żelazny
* gnu/packages/cran.scm (r-assertr): New variable. Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
2019-09-12gnu: emacs-interactive-align: Update to 0.4.2.Brian Leung
* gnu/packages/emacs-xyz.scm (emacs-interactive-align): Update to 0.4.2. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-12gnu: Add emacs-doom-themes.Tim Gesthuizen
* gnu/packages/emacs-xyz.scm (emacs-doom-themes): New variable. Co-authored-by: Brett Gilio <brettg@posteo.net> Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2019-09-12gnu: gmsh: Fetch source from Git.Paul Garlick
* gnu/packages/maths.scm (gmsh)[source]: Switch to GIT-FETCH.
2019-09-13gnu: python-pytest-virtualenv: Enable tests.Maxim Cournoyer
* gnu/packages/python-check.scm (python-pytest-virtualenv) [phases]{patch-virtualenv-executable}: New phase. [propagated-inputs]: Move python-virtualenv from here... [inputs]: ...to here.
2019-09-13gnu: python-pathpy: Add a missing propagated input.Maxim Cournoyer
This fixes the build of 'python-pytest-shutil', amongst others. * gnu/packages/python-xyz.scm (python-pathpy)[propagated-inputs]: Add python-importlib-metadata.
2019-09-12gnu: gfbgraph: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (gfbgraph)[source]: Hard-code NAME.
2019-09-12gnu: openconnect: Update to 8.05 [fixes CVE-2019-16239].Tobias Geerinckx-Rice
* gnu/packages/vpn.scm (openconnect): Update to 8.05.
2019-09-12gnu: hypre: Update texlive-union.Ricardo Wurmus
* gnu/packages/maths.scm (hypre)[native-inputs]: Replace texlive-generic-xypic and texlive-fonts-xypic with texlive-xypic; add texlive-cm to the texlive-union.
2019-09-12gnu: texlive-xypic: Install all files.Ricardo Wurmus
Reported by numerobis on the #guix IRC channel. * gnu/packages/tex.scm (texlive-xypic)[source]: Install "tex/generic/xypic" files. [arguments]: Remove #:tex-directory.
2019-09-12gnu: python-language-server: Update to 0.28.3-1.c3cab77.Brian Leung
* gnu/packages/python-xyz.scm (python-language-server): Update to 0.28.3-1.c3cab77. Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2019-09-11gnu: r-bsgenome-celegans-ucsc-ce6: Permit substitution.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[arguments]: Remove field.
2019-09-11gnu: r-bsgenome-celegans-ucsc-ce6: Use bioconductor-uri.Ricardo Wurmus
* gnu/packages/bioconductor.scm (r-bsgenome-celegans-ucsc-ce6)[source]: Use BIOCONDUCTOR-URI.
2019-09-11gnu: python-ipython-documentation: Make reproducible.Ricardo Wurmus
Fixes <https://bugs.gnu.org/37373/>. * gnu/packages/python-xyz.scm (python-ipython)[arguments]: Add phase "make-docs-reproducible" to remove timestamps from documentation generated in dependent python-ipython-documentation package.
2019-09-11gnu: recode: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (recode)[source]: Hard-code NAME.
2019-09-11gnu: recode: Update to 3.7.5.Tobias Geerinckx-Rice
* gnu/packages/textutils.scm (recode): Update to 3.7.5. [native-inputs]: Use python@3 and python-cython@3.
2019-09-11gnu: glslang: Use GIT-FILE-NAME.Tobias Geerinckx-Rice
* gnu/packages/vulkan.scm (glslang)[source]: Use GIT-FILE-NAME.
2019-09-11gnu: nghttp2: Don't use NAME in source URI.Tobias Geerinckx-Rice
* gnu/packages/web.scm (nghttp2)[source]: Hard-code NAME.
2019-09-11gnu: neofetch: Update to 6.1.0.Tobias Geerinckx-Rice
* gnu/packages/admin.scm (neofetch): Update to 6.1.0.
2019-09-11gnu: youtube-dl: Update to 2019.09.12.Rutger Helling
* gnu/packages/video.scm (youtube-dl): Update to 2019.09.12.
2019-09-11gnu: openssl: Update to 1.1.1d [fix CVE-2019-{1547,1549,1552,1563}].Tobias Geerinckx-Rice
* gnu/packages/tls.scm (openssl-next): Update to 1.1.1d.
2019-09-11gnu: foo2zjs: Update to 20190909.Tobias Geerinckx-Rice
* gnu/packages/cups.scm (foo2zjs): Update to 20190909.
2019-09-11gnu: workrave: Correct the types of inputs used.Maxim Cournoyer
* gnu/packages/gnome.scm (workrave)[propagated-inputs]: Move them all to... [inputs]: ...here. [native-inputs]: Move libxscrnsaver to the 'inputs' field.
2019-09-11gnu: workrave: Update to version 1.10.34.Maxim Cournoyer
* gnu/packages/gnome.scm (workrave): Update version and hash strings. [inputs]: Remove python-cheetah. [native-inputs]: Add boost, python-3 and python-jinja2; remove the "bin" output of glib.
2019-09-11gnu: emacs-debbugs: Update to 0.19.Ludovic Courtès
* gnu/packages/emacs-xyz.scm (emacs-debbugs): Update to 0.19.
2019-09-11gnu: emacs-smart-mode-line: Update to 2.13.Ludovic Courtès
* gnu/packages/emacs-xyz.scm (emacs-smart-mode-line): Update to 2.13.
2019-09-11gnu: guile-json: Use "mirror://savannah" URL.Ludovic Courtès
* gnu/packages/guile.scm (guile-json, guile-json-3): Change URL to mirror://savannah.
2019-09-11gnu: guile-json: Update to 3.2.0.Ludovic Courtès
* gnu/packages/guile.scm (guile-json-3): Update to 3.2.0.
2019-09-11gnu: guile-gcrypt: Update to 0.2.0.Ludovic Courtès
* gnu/packages/gnupg.scm (guile-gcrypt): Update to 0.2.0.
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