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2018-03-21gnu: Add tinyscheme.Tobias Geerinckx-Rice
* gnu/packages/scheme.scm (tinyscheme): New public variable.
2018-03-21gnu: libosinfo: Update usb.ids.Tobias Geerinckx-Rice
This follows up commit 0def9120882f90372fd6bb2e80e8330d67745610, which tried to use the CVS ID as the SVN revision, which unfortunately doesn't work. * gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Update revision and hash for ‘usb.ids’.
2018-03-21gnu: rawtherapee: Update to 5.4.Leo Famulari
* gnu/packages/photo.scm (rawtherapee): Update to 5.4.
2018-03-21gnu: pigx-chipseq: Update to 0.0.10.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.10. [inputs]: Remove r-rcas and duplicate of snakemake; add r-biocparallel, r-biostrings, r-dplyr, r-genomicalignments, rsamtools, r-s4vectors, r-tibble, r-tidyr, r-htmlwidgets, and r-rmarkdown.
2018-03-21gnu: libosinfo: Fix URL for usb.ids.Danny Milosavljevic
Fixes <http://bugs.gnu.org/30890>. * gnu/packages/virtualization.scm (libosinfo)[native-inputs]: Fix URL of "usb.ids".
2018-03-21gnu: texlive-fonts-amsfonts: Make build reproducible.Danny Milosavljevic
* gnu/packages/tex.scm (texlive-fonts-amsfonts)[arguments]<#:phases>[build]: Make build reproducible.
2018-03-20gnu: util-linux: Fix CVE-2018-7738 without grafting.Leo Famulari
* gnu/packages/linux.scm (util-linux)[replacement]: Remove field. (util-linux-2.31.1): New variable. * gnu/system.scm (%base-packages): Use util-linux-2.31.1.
2018-03-20gnu: gparted: Update to 0.31.0.Tobias Geerinckx-Rice
* gnu/packages/disk.scm (gparted): Update to 0.31.0.
2018-03-20gnu: coq-flocq: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/ocaml.scm (coq-flocq)[arguments]: Substitute INVOKE for SYSTEM* and end all phases with an explicit #t.
2018-03-20gnu: leocad: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/lego.scm (leocad)[home-page]: Use HTTPS.
2018-03-20gnu: leocad: Update phase style.Tobias Geerinckx-Rice
* gnu/packages/lego.scm (leocad)[arguments]: Substitute INVOKE for SYSTEM* and end all phases with an explicit #t.
2018-03-20gnu: leocad: Update to 18.02.Tobias Geerinckx-Rice
* gnu/packages/lego.scm (leocad): Update to 18.02.
2018-03-20gnu: gmp-ecm: Update to 7.0.4.Tobias Geerinckx-Rice
* gnu/packages/algebra.scm (gmp-ecm): Update to 7.0.4. [source]: Use predictable URI.
2018-03-20gnu: r-spams: Use predictable source URI.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-spams)[source]: Use predictable URI.
2018-03-20gnu: pigx-chipseq: Update to 0.0.9.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-chipseq): Update to 0.0.9. [inputs]: Add coreutils and grep.
2018-03-20gnu: Add python-logwrap.Vijayalakshmi
* gnu/packages/python.scm (python-logwrap): New variable. Co-authored-by: Ricardo Wurmus <rekado@elephly.net>
2018-03-20gnu: python-ptyprocess: Update source URL.Oleg Pykhalov
* gnu/packages/python.scm (python-ptyprocess)[origin](source): Update URL.
2018-03-20gnu: rofi: Update source hash.Marius Bakke
The tarball was updated in-place with a bugfix; see <https://github.com/DaveDavenport/rofi/issues/782>. * gnu/packages/xdisorg.scm (rofi)[source](sha256): Adjust hash. [arguments]: Remove phase 'add-missing-configuration-files'.
2018-03-20Correct name and Email for ng0.ng0
* .mailmap: Correct name and Email for ng0. * Makefile.am, doc/guix.texi, etc/completion/fish/guix.fish gnu/packages/accessibility.scm, gnu/packages/admin.scm, gnu/packages/audio.scm, gnu/packages/autotools.scm, gnu/packages/cdrom.scm, gnu/packages/check.scm, gnu/packages/cinnamon.scm, gnu/packages/compression.scm, gnu/packages/crypto.scm, gnu/packages/databases.scm, gnu/packages/django.scm, gnu/packages/dns.scm, gnu/packages/emacs.scm, gnu/packages/enlightenment.scm, gnu/packages/fonts.scm, gnu/packages/fontutils.scm, gnu/packages/forth.scm, gnu/packages/fvwm.scm, gnu/packages/games.scm, gnu/packages/gl.scm, gnu/packages/gnome.scm, gnu/packages/gnunet.scm, gnu/packages/gnupg.scm, gnu/packages/gnuzilla.scm, gnu/packages/gtk.scm, gnu/packages/guile-wm.scm, gnu/packages/guile.scm, gnu/packages/haskell-check.scm, gnu/packages/haskell-crypto.scm, gnu/packages/haskell.scm, gnu/packages/image-viewers.scm, gnu/packages/image.scm, gnu/packages/irc.scm, gnu/packages/language.scm, gnu/packages/libcanberra.scm, gnu/packages/linux.scm, gnu/packages/lisp.scm, gnu/packages/lolcode.scm, gnu/packages/lxde.scm, gnu/packages/lxqt.scm, gnu/packages/mail.scm, gnu/packages/markup.scm, gnu/packages/mate.scm, gnu/packages/maths.scm, gnu/packages/mc.scm, gnu/packages/messaging.scm, gnu/packages/music.scm, gnu/packages/ncurses.scm, gnu/packages/networking.scm, gnu/packages/nickle.scm, gnu/packages/openbox.scm, gnu/packages/pdf.scm, gnu/packages/perl-check.scm, gnu/packages/perl.scm, gnu/packages/python-crypto.scm, gnu/packages/python-web.scm, gnu/packages/python.scm, gnu/packages/qt.scm, gnu/packages/ruby.scm, gnu/packages/rust.scm, gnu/packages/scheme.scm, gnu/packages/serialization.scm, gnu/packages/shells.scm, gnu/packages/ssh.scm, gnu/packages/suckless.scm, gnu/packages/tbb.scm, gnu/packages/telephony.scm, gnu/packages/text-editors.scm, gnu/packages/textutils.scm, gnu/packages/time.scm, gnu/packages/tls.scm, gnu/packages/tor.scm, gnu/packages/version-control.scm, gnu/packages/video.scm, gnu/packages/vim.scm, gnu/packages/web.scm, gnu/packages/wm.scm, gnu/packages/xdisorg.scm, gnu/packages/xfce.scm, gnu/packages/xml.scm, gnu/packages/xorg.scm, gnu/services/certbot.scm, gnu/services/desktop.scm, gnu/services/version-control.scm, gnu/services/web.scm, guix/import/hackage.scm, guix/licenses.scm: Likewise. Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2018-03-20gnu: ruby-sanitize: Update to 4.6.3.Kei Kebreau
This fixes CVE-2018-3740. * gnu/packages/ruby.scm (ruby-sanitize): Update to 4.6.3.
2018-03-20gnu: cdogs-sdl: Update to commit bab20313.宋文武
Fixes <https://bugs.gnu.org/30623>. * gnu/packages/games.scm (cdogs-sdl): Update to commit bab2031369b9ea2dbeb7eedbde10a43dd8ca83db. [source]: Use git-fetch.
2018-03-20gnu: Add r-dyn.Sahithi Yarlagadda
* gnu/packages/cran.scm (r-dyn): New variable.
2018-03-20gnu: pigx-bsseq: Update to 0.0.8.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.8.
2018-03-20Merge branch 'staging'Marius Bakke
2018-03-20gnu: pigx-rnaseq: Update to 0.0.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-rnaseq): Update to 0.0.3. [inputs]: Add gzip.
2018-03-20gnu: dnsmasq: Fix description typos.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (dnsmasq)[description]: Fix some typos.
2018-03-20gnu: dnsmasq: Update to 2.79.Tobias Geerinckx-Rice
* gnu/packages/dns.scm (dnsmasq): Update to 2.79.
2018-03-20gnu: certbot: Update to 0.22.1.Marius Bakke
* gnu/packages/tls.scm (python-acme, certbot): Update to 0.22.1.
2018-03-20gnu: python-cryptography: Update to 2.2.Marius Bakke
* gnu/packages/python-crypto.scm (python-cryptography-vectors, python-cryptography): Update to 2.2.
2018-03-20gnu: imlib2: Update to 1.5.1.Marius Bakke
* gnu/packages/image.scm (imlib2): Update to 1.5.1.
2018-03-20gnu: imagemagick: Update to 6.9.9-39.Marius Bakke
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.9-39.
2018-03-20gnu: zziplib: Correct license.Marius Bakke
* gnu/packages/compression.scm (zziplib)[license]: Add MPL1.1.
2018-03-20gnu: zziplib: Update to 0.13.69.Marius Bakke
* gnu/packages/compression.scm (zziplib): Update to 0.13.69. [home-page]: Use new GitHub home. [source](uri): Adjust accordingly. [arguments]: Remove.
2018-03-20gnu: rofi: Update to 1.5.1.Marius Bakke
* gnu/packages/xdisorg.scm (rofi): Update to 1.5.1.
2018-03-20Revert "Revert "gnu: patchelf: Update argument phase.""Marius Bakke
This change only affects armhf, which doesn't use PatchELF. My bad! This reverts commit b1d096f869ed53b84486855d73c7e9070fdf3ae2.
2018-03-20Revert "gnu: patchelf: Update argument phase."Marius Bakke
It causes too many rebuilds this late in the 'staging' cycle. This reverts commit c1d1cd817c7ab8d99e962e286c207943765a8e8f.
2018-03-19gnu: uwsgi: Update to 2.0.17 [fixes CVE-2018-7490].Leo Famulari
* gnu/packages/web.scm (uwsgi): Update to 2.0.17. [source]: Use HTTPS URL.
2018-03-19gnu: mcron: Update to 1.1 and deprecate "mcron2".Ludovic Courtès
* gnu/packages/guile.scm (mcron): Update to 1.1. [native-inputs]: Add TZDATA-FOR-TESTS. [arguments]: New field. (mcron2): Define using 'deprecated-package'. * gnu/services/mcron.scm: Replace 'mcron2' with 'mcron'. * doc/guix.texi (Scheduled Job Execution): Likewise. * gnu/tests/base.scm (%mcron-os): Remove comment about mcron2.
2018-03-19gnu: linux-libre: Update to 4.15.11.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-version): Update to 4.15.11. (%linux-libre-hash): Update hash.
2018-03-19gnu: linux-libre@4.14: Update to 4.14.28.Mark H Weaver
* gnu/packages/linux.scm (%linux-libre-4.14-version): Update to 4.14.28. (%linux-libre-4.14-hash): Update hash.
2018-03-19gnu: linux-libre@4.9: Update to 4.9.88.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.9): Update to 4.9.88.
2018-03-19gnu: linux-libre@4.4: Update to 4.4.122.Mark H Weaver
* gnu/packages/linux.scm (linux-libre-4.4): Update to 4.4.122.
2018-03-19gnu: weechat: Update to 2.1.Tobias Geerinckx-Rice
* gnu/packages/irc.scm (weechat): Update to 2.1.
2018-03-19gnu: perl-xml-compile-soap: Update to 3.24.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-compile-soap): Update to 3.24.
2018-03-19gnu: perl-xml-simple: Update to 2.25.Tobias Geerinckx-Rice
* gnu/packages/xml.scm (perl-xml-simple): Update to 2.25.
2018-03-19gnu: perl-math-random-secure: Fix typo.Tobias Geerinckx-Rice
* gnu/packages/crypto.scm (perl-math-random-secure)[description]: Fix the spelling of ‘millennia’.
2018-03-19gnu: pigx-bsseq: Update to 0.0.7.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-bsseq): Update to 0.0.7. [inputs]: Add coreutils, sed, and grep.
2018-03-19gnu: bismark: Fix references to gunzip.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (bismark)[arguments]: Keep reference to gunzip executable. [inputs]: Add gzip.
2018-03-19gnu: pigx-scrnaseq: Update to 0.0.3.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (pigx-scrnaseq): Update to 0.0.3. [inputs]: Add coreutils and perl.
2018-03-19patchelf: Use 'https' for source uri.Efraim Flashner
* gnu/packages/elf.scm (patchelf)[source]: Use 'https' for source uri.
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