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2018-08-22Merge branch 'master' into stagingMarius Bakke
2018-08-22gnu: mariadb: Remove huge mysql_embedded executable.Marius Bakke
* gnu/packages/databases.scm (mariadb)[arguments]: Adjust deletion regex.
2018-08-22gnu: mariadb: Propagate OpenSSL.Marius Bakke
* gnu/packages/databases.scm (mariadb)[inputs]: Move OPENSSL ... [propagated-inputs]: ... here. (r-rmysql)[inputs]: Remove OPENSSL.
2018-08-22gnu: ImageMagick: Update to 6.9.10-10.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.10-10.
2018-08-22gnu: GraphicsMagick: Update to 1.3.30.Leo Famulari
* gnu/packages/imagemagick.scm (graphicsmagick): Update to 1.3.30.
2018-08-22gnu: r-fpc: Update to 2.1-11.1.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-fpc): Update to 2.1-11.1.
2018-08-22gnu: r-survival: Update to 2.42-6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-survival): Update to 2.42-6.
2018-08-22gnu: Add sqlcrush.Tobias Geerinckx-Rice
* gnu/packages/databases.smc (sqlcrush): New public variable.
2018-08-22gnu: Add python-pymysql.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pymysql, python2-pymysql): New public variables.
2018-08-21gnu: luakit: Fix crash on startup.Raphaël Mélotte
* gnu/packages/web-browsers.scm (luakit): add XDG_CONFIG_DIRS to the wrapping phase. This fixes a crash when no configuration file is present in the user's home directory. It allows luakit to use it's own default configuration files. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2018-08-21gnu: guile-ssh: Don't build libguile-ssh.a.Ludovic Courtès
* gnu/packages/ssh.scm (guile-ssh)[arguments]: Add #:configure-flags.
2018-08-21gnu: openssh: Don't allow remote username enumeration [fixes CVE-2018-15473].Leo Famulari
* gnu/packages/patches/openssh-CVE-2018-15473.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/ssh.scm (openssh)[source]: Use it.
2018-08-21gnu: python-paramiko: Add some missing dependencies.Leo Famulari
* gnu/packages/python-crypto.scm (python-paramiko, python2-paramiko)[propagated-inputs]: Add python-bcrypt and python-pynacl.
2018-08-21gnu: asymptote: Use minimal texlive-union.Pierre Neidhardt
* gnu/packages/plotutils.scm (asymptote)[native-inputs]: Replace texlive with texlive-union.
2018-08-21gnu: texlive-latex-base: Include support files.Pierre Neidhardt
* gnu/packages/tex.scm (texlive-latex-base)[native-inputs]: Include support files.
2018-08-21gnu: mit-scheme: Use minimal texlive-union.Pierre Neidhardt
* gnu/packages/scheme.scm (mit-scheme)[native-inputs]: Replace texlive with texlive-union.
2018-08-21gnu: sl: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/toys.scm (sl)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-21gnu: python-rpy2: Update to 2.9.4.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2): Update to 2.9.4. [arguments]: Remove obsolete phases and substitute INVOKE for SYSTEM* now that we can.
2018-08-21gnu: python-rpy2: Update home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-rpy2)[home-page]: Update URI.
2018-08-21gnu: r-iterators: Update to 1.0.10.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-iterators): Update to 1.0.10.
2018-08-21gnu: r-foreign: Update to 0.8-71.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-foreign): Update to 0.8-71.
2018-08-21gnu: r-with-tests: Return #t from all phases.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-with-tests)[arguments]: Substitute INVOKE for SYSTEM*.
2018-08-21gnu: fftw: Update to 3.3.8.Tobias Geerinckx-Rice
* gnu/packages/algebra.scm (fftw): Update to 3.3.8.
2018-08-21gnu: at-spi2-atk: Update to 2.26.2.Tobias Geerinckx-Rice
* gnu/packages/gtk.scm (at-spi2-atk): Update to 2.26.2.
2018-08-21gnu: unixodbc: Update to 2.3.7.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (unixodbc): Update to 2.3.7.
2018-08-21gnu: r-openssl: Update to 1.0.2.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-openssl): Update to 1.0.2.
2018-08-21gnu: r-modeltools: Update to 0.2-22.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-modeltools): Update to 0.2-22.
2018-08-20gnu: mysql: Update to 5.7.23.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (mysql): Update to 5.7.23.
2018-08-20gnu: mysql: Fix build.Tobias Geerinckx-Rice
MySQL demands boost@1.59.0, and lying about it no longer works: sql/item_geofunc_internal.cc: In function ‘void handle_gis_exception(const char*)’: sql/item_geofunc_internal.cc:37:81: error: expected unqualified-id before ‘&’ token catch (const boost::geometry::detail::self_get_turn_points::self_ip_exception &) ^ [...] * gnu/packages/databases.scm (boost-for-mysql): New variable. (mysql)[inputs]: Use that instead of the regular boost. [arguments]: Remove now-unnecessary ‘patch-boost-version’ phase.
2018-08-20gnu: python-pyodbc: Update to 4.0.24.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-pyodbc): Update to 4.0.24.
2018-08-20gnu: python-mysqlclient: Update to 1.3.13.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (python-mysqlclient): Update to 1.3.13.
2018-08-20gnu: perl-dbd-sqlite: Update to 1.58.Tobias Geerinckx-Rice
* gnu/packages/databases.scm (perl-dbd-sqlite): Update to 1.58.
2018-08-20gnu: r-energy: Update to 1.7-5.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-energy): Update to 1.7-5.
2018-08-20gnu: r-tinytex: Update to 0.6.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-tinytex): Update to 0.6. [propagated-inputs]: Add r-xfun.
2018-08-20gnu: r-xfun: Update to 0.3.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-xfun): Update to 0.3.
2018-08-20gnu: r-jomo: Update to 2.6-3.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-jomo): Update to 2.6-3.
2018-08-20gnu: r-trend: Update to 1.1.1.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-trend): Update to 1.1.1.
2018-08-20gnu: r-lava: Update to 1.6.3.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-lava): Update to 1.6.3.
2018-08-20gnu: r-mitml: Update to 0.3-6.Tobias Geerinckx-Rice
* gnu/packages/cran.scm (r-mitml): Update to 0.3-6.
2018-08-20gnu: r-vgam: Update to 1.0-6.Tobias Geerinckx-Rice
* gnu/packages/statistics.scm (r-vgam): Update to 1.0-6.
2018-08-20gnu: python-py: Use HTTPS home page.Tobias Geerinckx-Rice
* gnu/packages/python.scm (python-py)[home-page]: Use HTTPS.
2018-08-20gnu: xpad: Update to 5.1.0.Tobias Geerinckx-Rice
* gnu/packages/gnome.scm (xpad): Update to 5.1.0. [arguments]: Remove obsolete ‘run-autogen’ phase.
2018-08-20gnu: emacs-f: Update to 0.20.0.Tobias Geerinckx-Rice
* gnu/packages/emacs.scm (emacs-f): Update to 0.20.0.
2018-08-20gnu: emacs-f: Don't use unstable tarball.Tobias Geerinckx-Rice
* gnu/packages/emacs.scm (emacs-f)[source]: Use GIT-FETCH and GIT-FILE-NAME.
2018-08-20gnu: gimp: Report bugs to Guix.Tobias Geerinckx-Rice
Upstream prints this when running ./configure. Take the hint. NOTE: if you plan on packaging GIMP for distribution, it is recommended to override the bug report URL with option: --with-bug-report-url=https://example.com/ so that you can filter packaging bugs from core bugs before reporting upstream. * gnu/packages/gimp.scm (gimp)[arguments]: Customise bug report URI.
2018-08-20gnu: gimp: Update to 2.10.6.Tobias Geerinckx-Rice
* gnu/packages/gimp.scm (gimp): Update to 2.10.6.
2018-08-20gnu: gegl: Update to 0.4.8.Tobias Geerinckx-Rice
* gnu/packages/gimp.scm (gegl): Update to 0.4.8.
2018-08-20gnu: babl: Update to 0.1.56.Tobias Geerinckx-Rice
* gnu/packages/gimp.scm (babl): Update to 0.1.56.
2018-08-20gnu: guile-ssh: Update to 0.11.3.Ludovic Courtès
* gnu/packages/ssh.scm (guile-ssh): Update to 0.11.3.
2018-08-20gnu: guile-json: Update to 1.1.1.Ludovic Courtès
* gnu/packages/guile.scm (guile-json): Update to 1.1.1. [source]: Remove snippet. [native-inputs]: Add PKG-CONFIG.
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