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2017-03-12gnu: ecl: Update to 16.1.3.Andy Patterson
* gnu/packages/lisp.scm (ecl): Update to 16.1.3. [arguments]: Use a different method to set the binary used for tests. Signed-off-by: Leo Famulari <leo@famulari.name>
2017-03-12gnu: irssi: Update to 1.0.2.Marius Bakke
* gnu/packages/irc.scm (irssi): Update to 1.0.2.
2017-03-12gnu: tintin++: Use a mirror:// URI.Ludovic Courtès
* gnu/packages/games.scm (tintin++)[source]: Use mirror://sourceforge.
2017-03-12gnu: offlineimap: Update to 7.0.14.Tobias Geerinckx-Rice
* gnu/packages/mail.scm (offlineimap): Update to 7.0.14.
2017-03-12gnu: Add le-certs.Leo Famulari
* gnu/packages/certs.scm (le-certs): New variable.
2017-03-12gnu: Add r-tsne.Raoul Jean Pierre Bonnal
* gnu/packages/bioinformatics.scm (r-tsne): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-ranger.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-ranger): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-tclust.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-tclust): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-sn.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-sn): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-numderiv.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-numderiv): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-mnormt.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-mnormt): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-rcppprogress.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-rcppprogress): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-caret.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-caret): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-car.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-car): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-pbkrtest.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-pbkrtest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-lme4.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-lme4): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-nloptr.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-nloptr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-quantreg.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-quantreg): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-matrixmodels.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-matrixmodels): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-modelmetrics.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-modelmetrics): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-rcppeigen.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-rcppeigen): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: Add r-minqa.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-minqa): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-12gnu: wine: Update to 2.3.Danny Milosavljevic
* gnu/packages/wine.scm (wine): Update to 2.3.
2017-03-11gnu: Add phonon-backend-gstreamer.Thomas Danckaert
* gnu/packages/kde-frameworks.scm (phonon-backend-gstreamer): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: phonon: Install Qt extensions.Thomas Danckaert
* gnu/packages/kde-frameworks.scm (phonon)[arguments]: Add -DPHONON-INSTALL_QT_EXTENSIONS_INTO_SYSTEM_QT configure flag, and patch the installation directory. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: re2: Set CXX for cross-compilation.Sergei Trofimovich
* gnu/packages/regex.scm (re2)[arguments]: Specify CXX in #:make-flags. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: cuirass: Update to 0.0.1 revision 5.Mathieu Othacehe
* gnu/packages/ci.scm (cuirass): Update to 0.0.1 revision 5. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: imagemagick: Update to 6.9.7-10.Leo Famulari
* gnu/packages/imagemagick.scm (imagemagick): Update to 6.9.7-10.
2017-03-11gnu: Add ghc-unexceptionalio.rsiddharth
* gnu/packages/haskell.scm (ghc-unexceptionalio): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-11gnu: Add emacs-memoize.Arun Isaac
* gnu/packages/emacs.scm (emacs-memoize): New variable. Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2017-03-10gnu: wget: Fix CVE-2017-6508.Leo Famulari
* gnu/packages/patches/wget-CVE-2017-6508.patch: New file. * gnu/local.mk (dist_patch_DATA): Add it. * gnu/packages/wget.scm (wget)[source]: Use it.
2017-03-11gnu: Add r-fnn.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fnn): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-pbapply.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-pbapply): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-vgam.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-vgam): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: vsearch: Update to 2.4.2.Ben Woodcroft
* gnu/packages/bioinformatics.scm (vsearch): Update to 2.4.2.
2017-03-11gnu: Add r-ape.Raoul Jean Pierre Bonnal
* gnu/packages/bioinformatics.scm (r-ape): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-fpc.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-fpc): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-trimcluster.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-trimcluster): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-robustbase.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-robustbase): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-deoptimr.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-deoptimr): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-prabclus.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-prabclus): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-mclust.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-mclust): New variable. Co-authored-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-flexmix.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-flexmix): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-modeltools.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-modeltools): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-11gnu: Add r-diptest.Raoul Jean Pierre Bonnal
* gnu/packages/statistics.scm (r-diptest): New variable. Signed-off-by: Ben Woodcroft <donttrustben@gmail.com>
2017-03-10gnu: Add obnam.Arun Isaac
* gnu/packages/backup.scm (obnam): New variable. Signed-off-by: Marius Bakke <mbakke@fastmail.com>
2017-03-10gnu: icestorm: Replace reference in icebox_vlog.Theodoros Foradis
* gnu/packages/fpga.scm (icestorm)[arguments]: Add phase "fix-usr-local" to replace reference to /usr/local/share.
2017-03-10gnu: dub: Update to 1.2.2.Danny Milosavljevic
* gnu/packages/ldc.scm (dub): Update to 1.2.2.
2017-03-10gnu: hmmer: Build reproducibly.Ben J. Woodcroft
* gnu/packages/patches/hmmer-remove-cpu-specificity.patch: New file. * gnu/packages/bioinformatics.scm (hmmer): Use it.
2017-03-10gnu: Add sambamba.Ricardo Wurmus
* gnu/packages/bioinformatics.scm (htslib-for-sambamba, sambamba): New variables.
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